Personal tools

UBERON:0002102

From FANTOM5_SSTAR

Jump to: navigation, search

Name:forelimb
Namespace:FANTOM
Definition:"A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts." [UBERONREF:0000003, Wikipedia:Forelimb]
Xrefs:
links:

AAO:0000205
BTO:0001729
EFO:0000882
EHDAA2:0002133
EHDAA:6208
EMAPA:17412
EV:0100014
FMA:24878
GAID:1215
GAID:51
galen:UpperExtremity
MA:0000025
MAT:0000394
MESH:A.13.395
MIAA:0000394
ncithesaurus:Upper_Extremity
SCTID:182245002
VHOG:0000338
VSAO:0000148

XAO:0003030
Synonyms: "anteriormost limb" EXACT []
"fore limb" EXACT []
"foreleg" RELATED []
"forelimb" EXACT []
"free part of upper limb" EXACT [FMA:24878]
"free upper limb" EXACT [FMA:24878, UBERONREF:0000003]
"membrum superius" EXACT [FMA:7183, FMA:TA]
"pectoral limb" EXACT []
"superior member" EXACT []
"upper extremity" EXACT []
"upper limb" EXACT []
Comments:AO notes: note that this corresponds to FMA:'free upper limb' (a limb segment), NOT 'upper limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Usage notes: Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm
Alt_id: UBERON:FMA_7183-MA_0000025-MIAA_0000394-XAO_0003030
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0002101(limb),UBERON:0004710(pectoral appendage)
develops_from:UBERON:0005417(forelimb bud)
part_of:UBERON:0010708(pectoral complex),UBERON:0000153(anterior region of body),UBERON:0010708(pectoral complex)



Children

is a:UBERON:0000024 (forelimb wing)
derives from:FF:0011277 (mouse forelimb- embryo E17 sample),FF:0011278 (mouse forelimb- embryo E18 sample),FF:0011314 (mouse forelimb- embryo E11 sample),FF:0011322 (mouse forelimb- embryo E12 sample),FF:0011331 (mouse forelimb- embryo E13 sample),FF:0011342 (mouse forelimb- embryo E14 sample),FF:0011351 (mouse forelimb- embryo E15 sample)
part of:UBERON:0002398 (manus),UBERON:0003531 (forelimb skin),UBERON:0008785 (upper limb segment)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002102 (forelimb), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.33e-86FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_f0d8f2944531a749fb1a8d195dc6650ep5@Evx2
1.33e-86FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_f0d8f2944531a749fb1a8d195dc6650ep5@Evx2
2.4e-74FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_9568b07d0918292100cb409905703231p@chr15:51484092..51484121, -
2.4e-74FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_9568b07d0918292100cb409905703231p@chr5:120256413..120256428, -
2.4e-74FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_9568b07d0918292100cb409905703231p@chr15:51484092..51484121, -
2.4e-74FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_9568b07d0918292100cb409905703231p@chr5:120256413..120256428, -
2.4e-74FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_9568b07d0918292100cb409905703231-, p@chr2:165983686..165983720
2.4e-74FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_9568b07d0918292100cb409905703231p@chr2:165983686..165983720, -
1.21e-61FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_a1a79208981c5772e1cd95371cc2a16bp@chr2:74505324..74505330, +
1.21e-61FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_a1a79208981c5772e1cd95371cc2a16bp@chr2:74505324..74505330, +
2.24e-61FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_5151331ec7c551b9fcf68952b2214549p1@Hoxd13
2.24e-61FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_5151331ec7c551b9fcf68952b2214549p1@Hoxd13
3.63e-52FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_2ecdc27ed7f4086441e7b5d93e475847p2@Hoxd12
3.63e-52FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_2ecdc27ed7f4086441e7b5d93e475847p2@Hoxd12
4.62e-52FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_c125e5e5e8f72295540ee1b6d6ba7493p4@Evx2
4.62e-52FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_c125e5e5e8f72295540ee1b6d6ba7493p4@Evx2
5.88e-52FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_2014925bfde2ad059d5c03728be68fd2p3@ENSMUST00000130532
5.88e-52FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_2014925bfde2ad059d5c03728be68fd2p3@ENSMUST00000130532
5.28e-50FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_742a44e4cbc08cf391376e6eb378ba61p1@ENSMUST00000136302
5.28e-50FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_742a44e4cbc08cf391376e6eb378ba61p1@ENSMUST00000136302
9.21e-50FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_75845dcde6fb71066e7aac0bb862a527p@chr6:51009701..51009744, -
9.21e-50FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_75845dcde6fb71066e7aac0bb862a527p@chr6:51009701..51009744, -
2.92e-48FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_f535a560ec87a2ff8b7a9fd2cb09efa3p5@Kera
2.92e-48FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_f535a560ec87a2ff8b7a9fd2cb09efa3p5@Kera
4.71e-48FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_98cebc32fe6151d0ba23bcd9f4b51727p2@Hoxa13
4.71e-48FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_98cebc32fe6151d0ba23bcd9f4b51727p2@Hoxa13
6.47e-48FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_65afddc71df64195f4c73055756ee429p@chr2:74513149..74513159, +
6.47e-48FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_65afddc71df64195f4c73055756ee429p@chr2:74513149..74513159, +
1.4e-44FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_20e38d848bfb14fe0cd2e0ab448ccb3ep@chr1:165288513..165288518, +
1.4e-44FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_20e38d848bfb14fe0cd2e0ab448ccb3ep@chr1:165288513..165288518, +
2.07e-41FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_6468e6a952f30f862b69d45a42534855p3@Dnm3
2.07e-41FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_6468e6a952f30f862b69d45a42534855p3@Dnm3
2.91e-40FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_cf090ac862f063d7337535027f9b7ebfp1@ENSMUST00000130532
2.91e-40FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_cf090ac862f063d7337535027f9b7ebfp1@ENSMUST00000130532
3.67e-40FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_407a542867de5283f28f00fca9b09cf0p4@ENSMUST00000130532
3.67e-40FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_407a542867de5283f28f00fca9b09cf0p4@ENSMUST00000130532
5.46e-39FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_7c70997785a5f0c0768529b863c560fdp3@Hoxa11as
5.46e-39FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_7c70997785a5f0c0768529b863c560fdp3@Hoxa11as
6.59e-38FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_8c59ed92264d2cc6b76b55fef32526f6p@chr2:74512009..74512012, +
6.59e-38FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_8c59ed92264d2cc6b76b55fef32526f6+, p@chr2:74512009..74512012
1.94e-35FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_c4ee3df0f15550b3ceee2e3f0b4ef4bcp3@ENSMUST00000147294, p3@uc008jia.1
1.94e-35FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_c4ee3df0f15550b3ceee2e3f0b4ef4bcp3@ENSMUST00000147294, p3@uc008jia.1
9.74e-35FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_5742e7fc09cc8d8631cbfa474a4321dcp6@Hapln1
9.74e-35FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_5742e7fc09cc8d8631cbfa474a4321dcp6@Hapln1
2.95e-34FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_806e0a6d43f550407a3e1d793f359b66p3@Acpl2
2.95e-34FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_806e0a6d43f550407a3e1d793f359b66p3@Acpl2
6.28e-34FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_4fb2a7c9707f6202867ca8d974feccc0p1@Dkk4
6.28e-34FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_4fb2a7c9707f6202867ca8d974feccc0p1@Dkk4
7.62e-34FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_26e52ffd228c5c5532d0b97f64a46c6cp2@Gdf5
7.62e-34FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_26e52ffd228c5c5532d0b97f64a46c6cp2@Gdf5
2.0e-33FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_960ca435997f1a06b6bcc7d1bd33a899p@chr18:80910310..80910329, -
2.0e-33FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_960ca435997f1a06b6bcc7d1bd33a899p@chr18:80910310..80910329, -
1.89e-32FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_d7ae9901c26ee9ef1e66e31c0728f48ep1@Hoxa13
1.89e-32FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_d7ae9901c26ee9ef1e66e31c0728f48ep1@Hoxa13
6.43e-32FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_c2c27d1e59c937731f68c5fea537aaa3p@chr2:33498116..33498124, +
6.43e-32FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_c2c27d1e59c937731f68c5fea537aaa3p@chr2:33498116..33498124, +
7.44e-32FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_c6978af42d3deaddb84d54248a6aca45p4@ENSMUST00000152118, p4@uc008jhz.1
7.44e-32FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_c6978af42d3deaddb84d54248a6aca45p4@ENSMUST00000152118, p4@uc008jhz.1
1.09e-30FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_0255dc8efd1b8e37f3c7b91fe28ed866p6@Hoxd11
1.09e-30FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_0255dc8efd1b8e37f3c7b91fe28ed866p6@Hoxd11
2.22e-30FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_36e90950c22e14a13eb4c77717937058+, p@chr12:34649201..34649205
2.22e-30FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_36e90950c22e14a13eb4c77717937058p@chr12:34649201..34649205, +
1.6e-29FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_8e131bb673c371c077515a9c6d533f47p5@Tbx5
1.6e-29FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_8e131bb673c371c077515a9c6d533f47p5@Tbx5
4.13e-29FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_e26b41d17015e679cd6a0409497ae98ap@chr5:120246556..120246565, +
4.13e-29FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_e26b41d17015e679cd6a0409497ae98ap@chr5:120246556..120246565, +
4.91e-29FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_e129c6f94e91b5297bc7ae98810488edp@chr5:120246522..120246553, +
4.91e-29FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_e129c6f94e91b5297bc7ae98810488edp@chr5:120246522..120246553, +
5.59e-29FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_f710738b3571092e90623f064e34fa0cp14@2810055G20Rik
5.59e-29FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_f710738b3571092e90623f064e34fa0cp14@2810055G20Rik
8.27e-29FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_7848fe93286d0f4147259a69e27b4187p23@Mecom
8.27e-29FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_7848fe93286d0f4147259a69e27b4187p23@Mecom
6.5e-28FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_5825db1b00a41d4989534e250d1fdde9p8@Tbx15
6.5e-28FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_5825db1b00a41d4989534e250d1fdde9p8@Tbx15
3.95e-27FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_47922b095459e378e151c321c284f917p@chr15:97807283..97807309, -
3.95e-27FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_47922b095459e378e151c321c284f917p@chr15:97807283..97807309, -
5.23e-27FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_74d58d34def530cb6fc75b3a47b28db2p8@Prrx1
5.23e-27FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_74d58d34def530cb6fc75b3a47b28db2p8@Prrx1
1.4e-26FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_8f6a2eb24df77c1ca18a5f7b5db66259p2@Nkx3-2
1.4e-26FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_8f6a2eb24df77c1ca18a5f7b5db66259p2@Nkx3-2
1.64e-26FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_079d5a351fe426c10e8089b001d34971p@chr16:95807232..95807250, -
1.64e-26FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_079d5a351fe426c10e8089b001d34971p@chr16:95807232..95807250, -
7.57e-26FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_2adcd780b85c1c483a4d0238ff941eb0p@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_2adcd780b85c1c483a4d0238ff941eb0p@chr3:37606335..37606337, -
7.57e-26FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_2adcd780b85c1c483a4d0238ff941eb0p@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_2adcd780b85c1c483a4d0238ff941eb0p@chr3:86116124..86116132, +
7.57e-26FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_2adcd780b85c1c483a4d0238ff941eb0-, p@chr3:37606335..37606337
7.57e-26FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_2adcd780b85c1c483a4d0238ff941eb0p@chr3:86116124..86116132, +
1.07e-25FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_17a07503088e277c8c4c88516e18663ep5@Arhgap28
1.07e-25FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_17a07503088e277c8c4c88516e18663ep5@Arhgap28
2.33e-25FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_bcda3de63c0252a346aa0770d75d3a3fp9@Igf1r
2.33e-25FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_bcda3de63c0252a346aa0770d75d3a3fp9@Igf1r
2.93e-25FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_c5d02982519cf6c1d724b173427f6aa7p@chr15:101936581..101936594, +
2.93e-25FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_c5d02982519cf6c1d724b173427f6aa7p@chr15:101936581..101936594, +
2.99e-25FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_8313030b5d0b83ce249d108f61202ff0p@chr17:23882313..23882330, -
2.99e-25FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_8313030b5d0b83ce249d108f61202ff0p@chr17:23882313..23882330, -
3.52e-25FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_7feca5689396a266558283cfa70428fbp1@Gdf5
3.52e-25FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_7feca5689396a266558283cfa70428fbp1@Gdf5
2.77e-24FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_74ecbf71c40274e64452ea5113b0df61p16@Rbfox2
2.77e-24FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_74ecbf71c40274e64452ea5113b0df61p16@Rbfox2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Upper limb, which connects the manus with the pectoral girdle.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0002102&oldid=3277371"