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UBERON:0002101

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Name:limb
Namespace:FANTOM
Definition:"A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb]
Xrefs:
links:

AAO:0010336
EFO:0000876
EHDAA2:0003172
EHDAA:1697
EHDAA:8273
EMAPA:16405
FMA:24875
GAID:36
galen:Extremity
MA:0000007
MAT:0000090
MIAA:0000090
ncithesaurus:Limb
OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA
SCTID:243996003
VHOG:0000336
VSAO:0000121

XAO:0003027
Synonyms: "flipper" NARROW SENSU []
"free limb" EXACT [FMA:24875]
"limb sensu vertebrata" EXACT [MAT:0000090]
"tetrapod limb" EXACT []
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004708(paired limb/fin)
develops_from:UBERON:0004347(limb bud)



Children

is a:UBERON:0002102 (forelimb),UBERON:0002103 (hindlimb),UBERON:0003285 (limb of embryo)
part of:UBERON:0001419 (skin of limb),UBERON:0002428 (limb bone),UBERON:0002472 (stylopod),UBERON:0002529 (limb segment),UBERON:0003587 (limb connective tissue),UBERON:0003606 (limb long bone),UBERON:0003657 (limb joint),UBERON:0003661 (limb muscle),UBERON:0004381 (skeleton of limb),UBERON:0004480 (musculature of limb),UBERON:0009749 (limb mesenchyme),UBERON:0010712 (limb skeleton subdivision),UBERON:0011139 (synovial limb joint),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002101 (limb), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_19a8961967130a69efa8c10dacd7121cp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_19a8961967130a69efa8c10dacd7121cp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_19a8961967130a69efa8c10dacd7121cp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_19a8961967130a69efa8c10dacd7121cp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_19a8961967130a69efa8c10dacd7121cp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_19a8961967130a69efa8c10dacd7121cp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_19a8961967130a69efa8c10dacd7121cp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_19a8961967130a69efa8c10dacd7121cp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_19a8961967130a69efa8c10dacd7121cp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_19a8961967130a69efa8c10dacd7121cp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_19a8961967130a69efa8c10dacd7121cp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_19a8961967130a69efa8c10dacd7121cp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_19a8961967130a69efa8c10dacd7121cp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_19a8961967130a69efa8c10dacd7121cp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_19a8961967130a69efa8c10dacd7121cp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_19a8961967130a69efa8c10dacd7121cp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_19a8961967130a69efa8c10dacd7121cp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_19a8961967130a69efa8c10dacd7121cp@chr11:3691037..3691040, +
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_57df4c38a66d67975f18f3baa77006eep7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_57df4c38a66d67975f18f3baa77006eep@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_57df4c38a66d67975f18f3baa77006eep@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_57df4c38a66d67975f18f3baa77006eep1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_57df4c38a66d67975f18f3baa77006eep@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_57df4c38a66d67975f18f3baa77006eep@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_57df4c38a66d67975f18f3baa77006eep@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_57df4c38a66d67975f18f3baa77006eep7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_57df4c38a66d67975f18f3baa77006eep@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_57df4c38a66d67975f18f3baa77006eep93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_57df4c38a66d67975f18f3baa77006eep@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_57df4c38a66d67975f18f3baa77006eep@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_57df4c38a66d67975f18f3baa77006eep93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_57df4c38a66d67975f18f3baa77006eep@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_57df4c38a66d67975f18f3baa77006eep1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_57df4c38a66d67975f18f3baa77006eep@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_57df4c38a66d67975f18f3baa77006eep108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_57df4c38a66d67975f18f3baa77006ee+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_57df4c38a66d67975f18f3baa77006eep77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_57df4c38a66d67975f18f3baa77006eep@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_57df4c38a66d67975f18f3baa77006eep46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_57df4c38a66d67975f18f3baa77006eep@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_57df4c38a66d67975f18f3baa77006eep@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_57df4c38a66d67975f18f3baa77006eep@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_57df4c38a66d67975f18f3baa77006eep@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_57df4c38a66d67975f18f3baa77006eep77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_57df4c38a66d67975f18f3baa77006eep@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_57df4c38a66d67975f18f3baa77006eep@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_57df4c38a66d67975f18f3baa77006eep54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_57df4c38a66d67975f18f3baa77006eep@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_57df4c38a66d67975f18f3baa77006eep54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_57df4c38a66d67975f18f3baa77006eep@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_57df4c38a66d67975f18f3baa77006eep@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_57df4c38a66d67975f18f3baa77006eep104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_57df4c38a66d67975f18f3baa77006eep@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_57df4c38a66d67975f18f3baa77006eep@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_57df4c38a66d67975f18f3baa77006eep@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_57df4c38a66d67975f18f3baa77006eep@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_57df4c38a66d67975f18f3baa77006eep108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_57df4c38a66d67975f18f3baa77006eep@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_57df4c38a66d67975f18f3baa77006eep46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_57df4c38a66d67975f18f3baa77006eep104@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_f3ff2c558a075dd2b7f1b3a097418780p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_f3ff2c558a075dd2b7f1b3a097418780p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_f3ff2c558a075dd2b7f1b3a097418780p73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_f3ff2c558a075dd2b7f1b3a097418780-, p@chr10:29918007..29918031
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_f3ff2c558a075dd2b7f1b3a097418780p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_f3ff2c558a075dd2b7f1b3a097418780p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_f3ff2c558a075dd2b7f1b3a097418780+, p@chr22:26299595..26299605










Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.