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UBERON:0002529

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Name:limb segment
Namespace:FANTOM
Definition:"A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [UBERON:cjm]
Xrefs:
links:

FMA:241863

MA:0002889
Synonyms: "free limb segment" EXACT [FMA:241863]
"limb region" EXACT []
"region of limb" EXACT []
"segment of limb" EXACT []
"subdivision of limb" EXACT []
Comments:note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z
Alt_id: UBERON:MA_0002889-FMA_9661

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0010538(paired limb/fin segment)
disjoint_from:UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0002470 (autopod region),UBERON:0002471 (zeugopod),UBERON:0002472 (stylopod),UBERON:0008784 (lower limb segment),UBERON:0008785 (upper limb segment),UBERON:0008837 (palmar/plantar part of autopod),UBERON:0009551 (distal segment of digit),UBERON:0012139 (segment of autopod)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002529 (limb segment), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:97176812..97176813, +
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_455ae255a2d15b228d149a20ea6bf841p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_455ae255a2d15b228d149a20ea6bf841p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_455ae255a2d15b228d149a20ea6bf841p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_455ae255a2d15b228d149a20ea6bf841p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_455ae255a2d15b228d149a20ea6bf841p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_455ae255a2d15b228d149a20ea6bf841p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_455ae255a2d15b228d149a20ea6bf841p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_455ae255a2d15b228d149a20ea6bf841p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_455ae255a2d15b228d149a20ea6bf841p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_455ae255a2d15b228d149a20ea6bf841p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_455ae255a2d15b228d149a20ea6bf841p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_455ae255a2d15b228d149a20ea6bf841p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_455ae255a2d15b228d149a20ea6bf841p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_455ae255a2d15b228d149a20ea6bf841p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_455ae255a2d15b228d149a20ea6bf841p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_455ae255a2d15b228d149a20ea6bf841p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_455ae255a2d15b228d149a20ea6bf841p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_455ae255a2d15b228d149a20ea6bf841+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_455ae255a2d15b228d149a20ea6bf841p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_455ae255a2d15b228d149a20ea6bf841p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_455ae255a2d15b228d149a20ea6bf841p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_455ae255a2d15b228d149a20ea6bf841p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_455ae255a2d15b228d149a20ea6bf841p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_455ae255a2d15b228d149a20ea6bf841p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_455ae255a2d15b228d149a20ea6bf841p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_455ae255a2d15b228d149a20ea6bf841p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_455ae255a2d15b228d149a20ea6bf841p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_455ae255a2d15b228d149a20ea6bf841p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_455ae255a2d15b228d149a20ea6bf841p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_455ae255a2d15b228d149a20ea6bf841p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_455ae255a2d15b228d149a20ea6bf841p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179514306..179514308, -
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_b13d3f4edff2600f659c18a049495f41-, p@chr2:152590465..152590472
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_b13d3f4edff2600f659c18a049495f41p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_b13d3f4edff2600f659c18a049495f41p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_b13d3f4edff2600f659c18a049495f41p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_b13d3f4edff2600f659c18a049495f41p38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_b13d3f4edff2600f659c18a049495f41p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_b13d3f4edff2600f659c18a049495f41p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_b13d3f4edff2600f659c18a049495f41p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_b13d3f4edff2600f659c18a049495f41p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_b13d3f4edff2600f659c18a049495f41p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_b13d3f4edff2600f659c18a049495f41p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_b13d3f4edff2600f659c18a049495f41p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_b13d3f4edff2600f659c18a049495f41p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_b13d3f4edff2600f659c18a049495f41p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_b13d3f4edff2600f659c18a049495f41p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_b13d3f4edff2600f659c18a049495f41p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_b13d3f4edff2600f659c18a049495f41p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_b13d3f4edff2600f659c18a049495f41-, p@chr10:29918007..29918031
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_b13d3f4edff2600f659c18a049495f41p38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_b13d3f4edff2600f659c18a049495f41p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_b13d3f4edff2600f659c18a049495f41p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_b13d3f4edff2600f659c18a049495f41p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_b13d3f4edff2600f659c18a049495f41p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_b13d3f4edff2600f659c18a049495f41p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_b13d3f4edff2600f659c18a049495f41p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_b13d3f4edff2600f659c18a049495f41p@chr5:95180155..95180172, +