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UBERON:0005290

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Name:myelencephalon
Namespace:FANTOM
Definition:"The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon]
Xrefs:
links:

BTO:0000758
EHDAA2:0001207
EHDAA:5526
EMAPA:17082
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000205

VHOG:0000456
Comments:the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004733(segmental subdivision of hindbrain)
develops_from:UBERON:0010096(future myelencephalon)
part_of:UBERON:0002028(hindbrain)



Children

part of:UBERON:0001896 (medulla oblongata)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005290 (myelencephalon), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr2:8851401..8851408,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr2:8851401..8851408, +
8.98e-131FFCP PHASE2:Hg19::chr5:35090318..35090324,-#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr5:35090318..35090324, -
8.98e-131FFCP PHASE2:Hg19::chr12:44467410..44467418,+#_c356ba0b25e7a1bcc832ca0b35834fd3p13@TMEM117
8.98e-131FFCP PHASE2:Hg19::chr6:132580699..132580702,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr6:132580699..132580702, +
8.98e-131FFCP PHASE1:Hg19::chr5:35090318..35090324,-#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr5:35090318..35090324, -
8.98e-131FFCP PHASE2:Hg19::chr5:35090057..35090065,-#_c356ba0b25e7a1bcc832ca0b35834fd3p27@PRLR
8.98e-131FFCP PHASE1:Hg19::chr12:44467410..44467418,+#_c356ba0b25e7a1bcc832ca0b35834fd3p13@TMEM117
8.98e-131FFCP PHASE1:Hg19::chr6:132580699..132580702,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr6:132580699..132580702, +
8.98e-131FFCP PHASE2:Hg19::chr2:8851401..8851408,+#_c356ba0b25e7a1bcc832ca0b35834fd3p@chr2:8851401..8851408, +
8.98e-131FFCP PHASE1:Hg19::chr5:35090057..35090065,-#_c356ba0b25e7a1bcc832ca0b35834fd3p27@PRLR
5.2e-118FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_930d92965e4d5335a8d2e3c800cbdf1dp@chr11:114146042..114146050, -
5.2e-118FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_930d92965e4d5335a8d2e3c800cbdf1dp@chr11:114146042..114146050, -
5.2e-118FFCP PHASE1:Hg19::chr8:12803146..12803155,+#_930d92965e4d5335a8d2e3c800cbdf1dp17@KIAA1456
5.2e-118FFCP PHASE2:Hg19::chr8:12803146..12803155,+#_930d92965e4d5335a8d2e3c800cbdf1dp17@KIAA1456
5.69e-99FFCP PHASE2:Hg19::chr7:129015906..129015915,+#_59f7728759861dfa488f6c3d05791869p@chr7:129015906..129015915, +
5.69e-99FFCP PHASE1:Hg19::chr5:35090259..35090267,-#_59f7728759861dfa488f6c3d05791869p12@PRLR
5.69e-99FFCP PHASE1:Hg19::chr7:129015906..129015915,+#_59f7728759861dfa488f6c3d05791869p@chr7:129015906..129015915, +
5.69e-99FFCP PHASE2:Hg19::chr5:35090259..35090267,-#_59f7728759861dfa488f6c3d05791869p12@PRLR
7.95e-99FFCP PHASE2:Hg19::chr7:129027894..129027906,+#_6110de3067f7b86e1feee04141435711p16@AHCYL2
7.95e-99FFCP PHASE1:Hg19::chr7:129027894..129027906,+#_6110de3067f7b86e1feee04141435711p16@AHCYL2
1.55e-98FFCP PHASE2:Hg19::chr8:37561236..37561245,+#_9843d49bec16649a632c469842ac713dp@chr8:37561236..37561245, +
1.55e-98FFCP PHASE1:Hg19::chr8:37561236..37561245,+#_9843d49bec16649a632c469842ac713dp@chr8:37561236..37561245, +
6.24e-88FFCP PHASE2:Hg19::chr11:119216846..119216857,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE2:Hg19::chr12:44467399..44467407,+#_6bebf02ee4f5c0b7643e522c1f6740d0p12@TMEM117
6.24e-88FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_6bebf02ee4f5c0b7643e522c1f6740d0p20@PRLR
6.24e-88FFCP PHASE2:Hg19::chr12:20951599..20951604,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE1:Hg19::chr11:119216846..119216857,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE2:Hg19::chr15:40492238..40492270,+#_6bebf02ee4f5c0b7643e522c1f6740d0p8@BUB1B
6.24e-88FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_6bebf02ee4f5c0b7643e522c1f6740d0p26@PRLR
6.24e-88FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_6bebf02ee4f5c0b7643e522c1f6740d0p26@PRLR
6.24e-88FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE1:Hg19::chr12:20951599..20951604,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE1:Hg19::chr15:40492238..40492270,+#_6bebf02ee4f5c0b7643e522c1f6740d0p8@BUB1B
6.24e-88FFCP PHASE2:Hg19::chr12:129304411..129304414,-#_6bebf02ee4f5c0b7643e522c1f6740d0p11@SLC15A4
6.24e-88FFCP PHASE1:Hg19::chr12:44467399..44467407,+#_6bebf02ee4f5c0b7643e522c1f6740d0p12@TMEM117
6.24e-88FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE1:Hg19::chr12:129304411..129304414,-#_6bebf02ee4f5c0b7643e522c1f6740d0p11@SLC15A4
6.24e-88FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_6bebf02ee4f5c0b7643e522c1f6740d0p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_6bebf02ee4f5c0b7643e522c1f6740d0p20@PRLR
9.74e-88FFCP PHASE2:Hg19::chr5:33514132..33514156,+#_88f5d7cce7b16745d120c6ebe31aedcbp@chr5:33514132..33514156, +
9.74e-88FFCP PHASE2:Hg19::chr11:71869850..71869861,+#_88f5d7cce7b16745d120c6ebe31aedcbp1@ENST00000544535
9.74e-88FFCP PHASE1:Hg19::chr8:12803139..12803144,+#_88f5d7cce7b16745d120c6ebe31aedcbp23@KIAA1456
9.74e-88FFCP PHASE2:Hg19::chr18:29172879..29172882,+#_88f5d7cce7b16745d120c6ebe31aedcbp5@TTR
9.74e-88FFCP PHASE2:Hg19::chr8:12803139..12803144,+#_88f5d7cce7b16745d120c6ebe31aedcbp23@KIAA1456
9.74e-88FFCP PHASE1:Hg19::chr18:29172879..29172882,+#_88f5d7cce7b16745d120c6ebe31aedcbp5@TTR
9.74e-88FFCP PHASE1:Hg19::chr5:33514132..33514156,+#_88f5d7cce7b16745d120c6ebe31aedcbp@chr5:33514132..33514156, +
9.74e-88FFCP PHASE1:Hg19::chr11:71869850..71869861,+#_88f5d7cce7b16745d120c6ebe31aedcbp1@ENST00000544535
1.52e-87FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_0d88a681a319ada6c7d43ef95056ae0dp5@C10orf105
1.52e-87FFCP PHASE2:Hg19::chr5:126959224..126959239,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr5:126959224..126959239, +
1.52e-87FFCP PHASE2:Hg19::chr11:111191106..111191110,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr11:111191106..111191110, +
1.52e-87FFCP PHASE2:Hg19::chr16:49670005..49670020,-#_0d88a681a319ada6c7d43ef95056ae0dp@chr16:49670005..49670020, -
1.52e-87FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_0d88a681a319ada6c7d43ef95056ae0dp5@C10orf105
1.52e-87FFCP PHASE1:Hg19::chr5:126959224..126959239,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr5:126959224..126959239, +
1.52e-87FFCP PHASE1:Hg19::chr16:49670005..49670020,-#_0d88a681a319ada6c7d43ef95056ae0dp@chr16:49670005..49670020, -
1.52e-87FFCP PHASE1:Hg19::chr11:111191106..111191110,+#_0d88a681a319ada6c7d43ef95056ae0dp@chr11:111191106..111191110, +
5.41e-85FFCP PHASE1:Hg19::chr10:73479546..73479553,-#_352b69ffa04e5eebe1aeba315eb4ee1fp4@C10orf105
5.41e-85FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_352b69ffa04e5eebe1aeba315eb4ee1fp@chr2:69741832..69741847, -
5.41e-85FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_352b69ffa04e5eebe1aeba315eb4ee1fp@chr2:69741832..69741847, -
5.41e-85FFCP PHASE2:Hg19::chr10:73479546..73479553,-#_352b69ffa04e5eebe1aeba315eb4ee1fp4@C10orf105
7.21e-85FFCP PHASE2:Hg19::chr5:150050170..150050182,+#_be4836a8addce356f8e517bd69a3ae53p@chr5:150050170..150050182, +
7.21e-85FFCP PHASE1:Hg19::chr5:150050170..150050182,+#_be4836a8addce356f8e517bd69a3ae53p@chr5:150050170..150050182, +
2.27e-84FFCP PHASE1:Hg19::chr15:99666457..99666462,+#_4fc991c20ede230eac5df8dc6d8a7a86p@chr15:99666457..99666462, +
2.27e-84FFCP PHASE2:Hg19::chr15:99666457..99666462,+#_4fc991c20ede230eac5df8dc6d8a7a86p@chr15:99666457..99666462, +
3.03e-84FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_aafb9ae797c27641f42feba0cdbb0c07p@chr17:42993851..42993858, -
3.03e-84FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_aafb9ae797c27641f42feba0cdbb0c07p@chr17:42993851..42993858, -
4.03e-84FFCP PHASE2:Hg19::chr17:65489258..65489261,-#_95688d020c318aeec09b12e2adc32f17p@chr17:65489258..65489261, -
4.03e-84FFCP PHASE1:Hg19::chr17:65489258..65489261,-#_95688d020c318aeec09b12e2adc32f17p@chr17:65489258..65489261, -
1.66e-74FFCP PHASE2:Hg19::chr10:18242120..18242136,+#_f7abed2d9a0275b103aa26215cc05ee9p4@SLC39A12
1.66e-74FFCP PHASE1:Hg19::chr10:18242120..18242136,+#_f7abed2d9a0275b103aa26215cc05ee9p4@SLC39A12
2.14e-74FFCP PHASE1:Hg19::chr12:47779637..47779662,-#_de0815caeda648424d62ffc6662b3883p@chr12:47779637..47779662, -
2.14e-74FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_de0815caeda648424d62ffc6662b3883p@chr9:128998376..128998387, -
2.14e-74FFCP PHASE2:Hg19::chr12:47779637..47779662,-#_de0815caeda648424d62ffc6662b3883p@chr12:47779637..47779662, -
2.14e-74FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_de0815caeda648424d62ffc6662b3883p@chr9:128998376..128998387, -
7.51e-74FFCP PHASE1:Hg19::chr6:151054854..151054865,+#_4c7691958e705f5e8f7b6897d7ae4130p17@PLEKHG1
7.51e-74FFCP PHASE2:Hg19::chr6:151054854..151054865,+#_4c7691958e705f5e8f7b6897d7ae4130p17@PLEKHG1
9.82e-67FFCP PHASE1:Hg19::chr7:129015671..129015685,+#_142862fa4faf872dd86a0d6edc4efd0ap11@AHCYL2
9.82e-67FFCP PHASE1:Hg19::chr5:35089843..35089860,-#_142862fa4faf872dd86a0d6edc4efd0ap7@PRLR
9.82e-67FFCP PHASE2:Hg19::chr7:129015671..129015685,+#_142862fa4faf872dd86a0d6edc4efd0ap11@AHCYL2
9.82e-67FFCP PHASE2:Hg19::chr5:35089843..35089860,-#_142862fa4faf872dd86a0d6edc4efd0ap7@PRLR
1.71e-66FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_0e49b837d581d608b64b84632dd5fba9p@chr9:20927844..20927855, +
1.71e-66FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_0e49b837d581d608b64b84632dd5fba9p@chr9:20927844..20927855, +
1.92e-66FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_dc68046df81859f1b143b76aebffa6e0p1@SLC6A5
1.92e-66FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_dc68046df81859f1b143b76aebffa6e0p1@SLC6A5
2.39e-66FFCP PHASE1:Hg19::chr9:5954514..5954521,-#_4ea94e99de2bb4a38c23d944329c0268p18@KIAA2026
2.39e-66FFCP PHASE2:Hg19::chr7:129015616..129015619,+#_4ea94e99de2bb4a38c23d944329c0268p38@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr7:129015511..129015519,+#_4ea94e99de2bb4a38c23d944329c0268p30@AHCYL2
2.39e-66FFCP PHASE2:Hg19::chr9:5954514..5954521,-#_4ea94e99de2bb4a38c23d944329c0268p18@KIAA2026
2.39e-66FFCP PHASE1:Hg19::chr7:129015616..129015619,+#_4ea94e99de2bb4a38c23d944329c0268p38@AHCYL2
2.39e-66FFCP PHASE2:Hg19::chr7:129015511..129015519,+#_4ea94e99de2bb4a38c23d944329c0268p30@AHCYL2
2.4e-66FFCP PHASE1:Hg19::chr3:59750150..59750155,-#_b4f6ed56a8a1d0b8a5605688d981931ap@chr3:59750150..59750155, -
2.4e-66FFCP PHASE1:Hg19::chr17:48913152..48913158,+#_b4f6ed56a8a1d0b8a5605688d981931ap9@WFIKKN2
2.4e-66FFCP PHASE2:Hg19::chr7:150529074..150529076,+#_b4f6ed56a8a1d0b8a5605688d981931ap@chr7:150529074..150529076, +
2.4e-66FFCP PHASE2:Hg19::chr3:59750150..59750155,-#_b4f6ed56a8a1d0b8a5605688d981931ap@chr3:59750150..59750155, -
2.4e-66FFCP PHASE1:Hg19::chr7:150529074..150529076,+#_b4f6ed56a8a1d0b8a5605688d981931ap@chr7:150529074..150529076, +
2.4e-66FFCP PHASE2:Hg19::chr17:48913152..48913158,+#_b4f6ed56a8a1d0b8a5605688d981931ap9@WFIKKN2
2.41e-66FFCP PHASE2:Hg19::chr10:97236225..97236232,-#_b91b7504c9eb6307e8cea6fdc73c1d55p@chr10:97236225..97236232, -
2.41e-66FFCP PHASE1:Hg19::chr10:97236225..97236232,-#_b91b7504c9eb6307e8cea6fdc73c1d55p@chr10:97236225..97236232, -
3.35e-66FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_8687afae4c4d3af30a943b3e92797d3fp@chr3:10706167..10706179, -
3.35e-66FFCP PHASE1:Hg19::chr3:125997081..125997085,+#_8687afae4c4d3af30a943b3e92797d3fp@chr3:125997081..125997085, +