Personal tools

UBERON:0001896

From FANTOM5_SSTAR

Jump to: navigation, search

Name:medulla oblongata
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata]
Xrefs:
links:

AAO:0010486
ABA:MY
BTO:0000041
EFO:0000924
EHDAA2:0001088
EHDAA:7588
EMAPA:17550
EV:0100275
FMA:62004
GAID:590
[1]
MA:0000206
MAT:0000111
MAT:0000367
MESH:A.08.186.211.132.810.406
MIAA:0000111
ncithesaurus:Medulla_Oblongata
NIF_GrossAnatomy:birnlex_957
OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA
SCTID:279104005
TAO:0000545
VHOG:0000181
XAO:0003100

ZFA:0000545
Synonyms: "bulb" BROAD []
"bulbus" EXACT [FMA:62004, FMA:TA]
"medulla" BROAD [ABA:MY]
"medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata]
"metepencephalon" RELATED [FMA:62004]
Alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002028(hindbrain),UBERON:0002298(brainstem),UBERON:0005290(myelencephalon)



Children

is a:FF:10361-105F1 (medulla oblongata, newborn, donor10223)
derives from:FF:0010038 (human medulla oblongata - adult sample),FF:0011284 (mouse medulla oblongata- adult sample),FF:0011465 (mouse medulla oblongata- neonate N30 sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001896 (medulla oblongata), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr2:8851401..8851408,+#_68c3e983765014266873215ef9f2974ap@chr2:8851401..8851408, +
8.98e-131FFCP PHASE1:Hg19::chr6:132580699..132580702,+#_68c3e983765014266873215ef9f2974ap@chr6:132580699..132580702, +
8.98e-131FFCP PHASE1:Hg19::chr5:35090057..35090065,-#_68c3e983765014266873215ef9f2974ap27@PRLR
8.98e-131FFCP PHASE2:Hg19::chr5:35090318..35090324,-#_68c3e983765014266873215ef9f2974ap@chr5:35090318..35090324, -
8.98e-131FFCP PHASE1:Hg19::chr12:44467410..44467418,+#_68c3e983765014266873215ef9f2974ap13@TMEM117
8.98e-131FFCP PHASE1:Hg19::chr2:8851401..8851408,+#_68c3e983765014266873215ef9f2974ap@chr2:8851401..8851408, +
8.98e-131FFCP PHASE2:Hg19::chr6:132580699..132580702,+#_68c3e983765014266873215ef9f2974ap@chr6:132580699..132580702, +
8.98e-131FFCP PHASE2:Hg19::chr12:44467410..44467418,+#_68c3e983765014266873215ef9f2974ap13@TMEM117
8.98e-131FFCP PHASE2:Hg19::chr5:35090057..35090065,-#_68c3e983765014266873215ef9f2974ap27@PRLR
8.98e-131FFCP PHASE1:Hg19::chr5:35090318..35090324,-#_68c3e983765014266873215ef9f2974ap@chr5:35090318..35090324, -
5.2e-118FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_186f65f65aa00cbd80c7e67372831ac6p@chr11:114146042..114146050, -
5.2e-118FFCP PHASE2:Hg19::chr8:12803146..12803155,+#_186f65f65aa00cbd80c7e67372831ac6p17@KIAA1456
5.2e-118FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_186f65f65aa00cbd80c7e67372831ac6p@chr11:114146042..114146050, -
5.2e-118FFCP PHASE1:Hg19::chr8:12803146..12803155,+#_186f65f65aa00cbd80c7e67372831ac6p17@KIAA1456
5.69e-99FFCP PHASE2:Hg19::chr7:129015906..129015915,+#_a7ed9df5bdde6b712291defad845530dp@chr7:129015906..129015915, +
5.69e-99FFCP PHASE1:Hg19::chr5:35090259..35090267,-#_a7ed9df5bdde6b712291defad845530dp12@PRLR
5.69e-99FFCP PHASE1:Hg19::chr7:129015906..129015915,+#_a7ed9df5bdde6b712291defad845530dp@chr7:129015906..129015915, +
5.69e-99FFCP PHASE2:Hg19::chr5:35090259..35090267,-#_a7ed9df5bdde6b712291defad845530dp12@PRLR
7.95e-99FFCP PHASE1:Hg19::chr7:129027894..129027906,+#_c9053c77dbf3bb4c2497ee775605383ap16@AHCYL2
7.95e-99FFCP PHASE2:Hg19::chr7:129027894..129027906,+#_c9053c77dbf3bb4c2497ee775605383ap16@AHCYL2
1.55e-98FFCP PHASE2:Hg19::chr8:37561236..37561245,+#_c4bfa268b9ff0ac0b1618f9f176c0316p@chr8:37561236..37561245, +
1.55e-98FFCP PHASE1:Hg19::chr8:37561236..37561245,+#_c4bfa268b9ff0ac0b1618f9f176c0316p@chr8:37561236..37561245, +
6.24e-88FFCP PHASE1:Hg19::chr15:40492238..40492270,+#_5a5321b3923df58e622e2ffe862f37a8p8@BUB1B
6.24e-88FFCP PHASE1:Hg19::chr12:44467399..44467407,+#_5a5321b3923df58e622e2ffe862f37a8p12@TMEM117
6.24e-88FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_5a5321b3923df58e622e2ffe862f37a8p20@PRLR
6.24e-88FFCP PHASE2:Hg19::chr11:119216846..119216857,-#_5a5321b3923df58e622e2ffe862f37a8p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE2:Hg19::chr12:44467399..44467407,+#_5a5321b3923df58e622e2ffe862f37a8p12@TMEM117
6.24e-88FFCP PHASE1:Hg19::chr12:129304411..129304414,-#_5a5321b3923df58e622e2ffe862f37a8p11@SLC15A4
6.24e-88FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_5a5321b3923df58e622e2ffe862f37a8p20@PRLR
6.24e-88FFCP PHASE2:Hg19::chr15:40492238..40492270,+#_5a5321b3923df58e622e2ffe862f37a8p8@BUB1B
6.24e-88FFCP PHASE1:Hg19::chr11:119216846..119216857,-#_5a5321b3923df58e622e2ffe862f37a8p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE2:Hg19::chr12:20951599..20951604,+#_5a5321b3923df58e622e2ffe862f37a8p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_5a5321b3923df58e622e2ffe862f37a8p26@PRLR
6.24e-88FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_5a5321b3923df58e622e2ffe862f37a8p26@PRLR
6.24e-88FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE1:Hg19::chr12:20951599..20951604,+#_5a5321b3923df58e622e2ffe862f37a8p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE2:Hg19::chr12:129304411..129304414,-#_5a5321b3923df58e622e2ffe862f37a8p11@SLC15A4
6.24e-88FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129015806..129015815, +
9.74e-88FFCP PHASE1:Hg19::chr5:33514132..33514156,+#_958def1af071bf3d3cb57b3e0c098bc7p@chr5:33514132..33514156, +
9.74e-88FFCP PHASE1:Hg19::chr18:29172879..29172882,+#_958def1af071bf3d3cb57b3e0c098bc7p5@TTR
9.74e-88FFCP PHASE2:Hg19::chr5:33514132..33514156,+#_958def1af071bf3d3cb57b3e0c098bc7p@chr5:33514132..33514156, +
9.74e-88FFCP PHASE1:Hg19::chr11:71869850..71869861,+#_958def1af071bf3d3cb57b3e0c098bc7p1@ENST00000544535
9.74e-88FFCP PHASE2:Hg19::chr11:71869850..71869861,+#_958def1af071bf3d3cb57b3e0c098bc7p1@ENST00000544535
9.74e-88FFCP PHASE1:Hg19::chr8:12803139..12803144,+#_958def1af071bf3d3cb57b3e0c098bc7p23@KIAA1456
9.74e-88FFCP PHASE2:Hg19::chr18:29172879..29172882,+#_958def1af071bf3d3cb57b3e0c098bc7p5@TTR
9.74e-88FFCP PHASE2:Hg19::chr8:12803139..12803144,+#_958def1af071bf3d3cb57b3e0c098bc7p23@KIAA1456
1.52e-87FFCP PHASE1:Hg19::chr5:126959224..126959239,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr5:126959224..126959239, +
1.52e-87FFCP PHASE1:Hg19::chr11:111191106..111191110,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr11:111191106..111191110, +
1.52e-87FFCP PHASE1:Hg19::chr16:49670005..49670020,-#_0c9924a32c250f1849968fe3aa9eb1f3p@chr16:49670005..49670020, -
1.52e-87FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_0c9924a32c250f1849968fe3aa9eb1f3p5@C10orf105
1.52e-87FFCP PHASE2:Hg19::chr5:126959224..126959239,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr5:126959224..126959239, +
1.52e-87FFCP PHASE2:Hg19::chr11:111191106..111191110,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr11:111191106..111191110, +
1.52e-87FFCP PHASE2:Hg19::chr16:49670005..49670020,-#_0c9924a32c250f1849968fe3aa9eb1f3p@chr16:49670005..49670020, -
1.52e-87FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_0c9924a32c250f1849968fe3aa9eb1f3p5@C10orf105
5.41e-85FFCP PHASE1:Hg19::chr10:73479546..73479553,-#_bf4f8ad227fc47dc5891f8ad275fe075p4@C10orf105
5.41e-85FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_bf4f8ad227fc47dc5891f8ad275fe075p@chr2:69741832..69741847, -
5.41e-85FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_bf4f8ad227fc47dc5891f8ad275fe075p@chr2:69741832..69741847, -
5.41e-85FFCP PHASE2:Hg19::chr10:73479546..73479553,-#_bf4f8ad227fc47dc5891f8ad275fe075p4@C10orf105
7.21e-85FFCP PHASE1:Hg19::chr5:150050170..150050182,+#_b4bdbe9d367fa2817a88b2a552ab8de2p@chr5:150050170..150050182, +
7.21e-85FFCP PHASE2:Hg19::chr5:150050170..150050182,+#_b4bdbe9d367fa2817a88b2a552ab8de2p@chr5:150050170..150050182, +
2.27e-84FFCP PHASE1:Hg19::chr15:99666457..99666462,+#_ce0e50efc20a92076a03ef5db91bf5f6p@chr15:99666457..99666462, +
2.27e-84FFCP PHASE2:Hg19::chr15:99666457..99666462,+#_ce0e50efc20a92076a03ef5db91bf5f6p@chr15:99666457..99666462, +
3.03e-84FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_962b3ca5ef8f94e59527ef74eb8c1bc3p@chr17:42993851..42993858, -
3.03e-84FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_962b3ca5ef8f94e59527ef74eb8c1bc3p@chr17:42993851..42993858, -
4.03e-84FFCP PHASE1:Hg19::chr17:65489258..65489261,-#_a6f292714c3230ce3a101e7f6dbca2a5p@chr17:65489258..65489261, -
4.03e-84FFCP PHASE2:Hg19::chr17:65489258..65489261,-#_a6f292714c3230ce3a101e7f6dbca2a5p@chr17:65489258..65489261, -
1.66e-74FFCP PHASE2:Hg19::chr10:18242120..18242136,+#_f32788d11c38c40374df11a7780271d8p4@SLC39A12
1.66e-74FFCP PHASE1:Hg19::chr10:18242120..18242136,+#_f32788d11c38c40374df11a7780271d8p4@SLC39A12
2.14e-74FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_fb5896f223aa0da30588ae0503617cb8p@chr9:128998376..128998387, -
2.14e-74FFCP PHASE1:Hg19::chr12:47779637..47779662,-#_fb5896f223aa0da30588ae0503617cb8p@chr12:47779637..47779662, -
2.14e-74FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_fb5896f223aa0da30588ae0503617cb8p@chr9:128998376..128998387, -
2.14e-74FFCP PHASE2:Hg19::chr12:47779637..47779662,-#_fb5896f223aa0da30588ae0503617cb8p@chr12:47779637..47779662, -
7.51e-74FFCP PHASE1:Hg19::chr6:151054854..151054865,+#_cde45bdffcc7ce78156f750348a5756bp17@PLEKHG1
7.51e-74FFCP PHASE2:Hg19::chr6:151054854..151054865,+#_cde45bdffcc7ce78156f750348a5756bp17@PLEKHG1
9.82e-67FFCP PHASE1:Hg19::chr7:129015671..129015685,+#_c5c9df535b4211af1045612322857c79p11@AHCYL2
9.82e-67FFCP PHASE2:Hg19::chr7:129015671..129015685,+#_c5c9df535b4211af1045612322857c79p11@AHCYL2
9.82e-67FFCP PHASE2:Hg19::chr5:35089843..35089860,-#_c5c9df535b4211af1045612322857c79p7@PRLR
9.82e-67FFCP PHASE1:Hg19::chr5:35089843..35089860,-#_c5c9df535b4211af1045612322857c79p7@PRLR
1.71e-66FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_f718344480f949c7f9a2b96000f62ea9p@chr9:20927844..20927855, +
1.71e-66FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_f718344480f949c7f9a2b96000f62ea9p@chr9:20927844..20927855, +
1.92e-66FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_7a267860ed1e359307780d303a636cccp1@SLC6A5
1.92e-66FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_7a267860ed1e359307780d303a636cccp1@SLC6A5
2.39e-66FFCP PHASE2:Hg19::chr7:129015511..129015519,+#_71ca6147e3aa3c37cbce10ec96d64b62p30@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr7:129015616..129015619,+#_71ca6147e3aa3c37cbce10ec96d64b62p38@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr9:5954514..5954521,-#_71ca6147e3aa3c37cbce10ec96d64b62p18@KIAA2026
2.39e-66FFCP PHASE2:Hg19::chr7:129015616..129015619,+#_71ca6147e3aa3c37cbce10ec96d64b62p38@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr7:129015511..129015519,+#_71ca6147e3aa3c37cbce10ec96d64b62p30@AHCYL2
2.39e-66FFCP PHASE2:Hg19::chr9:5954514..5954521,-#_71ca6147e3aa3c37cbce10ec96d64b62p18@KIAA2026
2.4e-66FFCP PHASE1:Hg19::chr7:150529074..150529076,+#_a4efbe9c9ddc1edcae172f5a662b834bp@chr7:150529074..150529076, +
2.4e-66FFCP PHASE2:Hg19::chr17:48913152..48913158,+#_a4efbe9c9ddc1edcae172f5a662b834bp9@WFIKKN2
2.4e-66FFCP PHASE1:Hg19::chr3:59750150..59750155,-#_a4efbe9c9ddc1edcae172f5a662b834bp@chr3:59750150..59750155, -
2.4e-66FFCP PHASE2:Hg19::chr7:150529074..150529076,+#_a4efbe9c9ddc1edcae172f5a662b834bp@chr7:150529074..150529076, +
2.4e-66FFCP PHASE1:Hg19::chr17:48913152..48913158,+#_a4efbe9c9ddc1edcae172f5a662b834bp9@WFIKKN2
2.4e-66FFCP PHASE2:Hg19::chr3:59750150..59750155,-#_a4efbe9c9ddc1edcae172f5a662b834bp@chr3:59750150..59750155, -
2.41e-66FFCP PHASE2:Hg19::chr10:97236225..97236232,-#_26053e81ab19c076fd1dcedc84dc55e2p@chr10:97236225..97236232, -
2.41e-66FFCP PHASE1:Hg19::chr10:97236225..97236232,-#_26053e81ab19c076fd1dcedc84dc55e2p@chr10:97236225..97236232, -
3.35e-66FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_9c5274f834121ed99dd3af50dbeba805p@chr3:10706167..10706179, -
3.35e-66FFCP PHASE2:Hg19::chr3:125997081..125997085,+#_9c5274f834121ed99dd3af50dbeba805p@chr3:125997081..125997085, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.