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UBERON:0002028

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Name:hindbrain
Namespace:FANTOM
Definition:"The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Rhombencephalon, ZFA:0000029, ZFIN:curator]
Xrefs:
links:

AAO:0010150
ABA:HB
BTO:0000672
EFO:0000923
EHDAA2:0000746
EHDAA:3514
EHDAA:6487
EMAPA:16916
EMAPA:18632
FMA:67687
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000195
MAT:0000107
MESH:A.08.186.211.132.810
MIAA:0000107
ncithesaurus:Hind-Brain
NIF_GrossAnatomy:birnlex_942
TAO:0000029
VHOG:0000070
XAO:0000015

ZFA:0000029
Synonyms: "rhombencephalon" RELATED []
Comments:in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps
Alt_id: UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003076(posterior neural tube),UBERON:0007277(presumptive hindbrain)
part_of:UBERON:0000955(brain)



Children

part of:UBERON:0001895 (metencephalon),UBERON:0001896 (medulla oblongata),UBERON:0002037 (cerebellum),UBERON:0004733 (segmental subdivision of hindbrain),UBERON:0005290 (myelencephalon),UBERON:0006215 (rhombic lip),UBERON:0009662 (hindbrain nucleus),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002028 (hindbrain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.71e-110FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_478bbfa21a5d49ca5ca714f9b653910ap@chr2:72381655..72381673, -
1.71e-110FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_478bbfa21a5d49ca5ca714f9b653910ap@chr2:72381655..72381673, -
5.84e-89FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_f8b25900e50d117fd9b58589b3eb80d6p1@SLC6A5
5.84e-89FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_f8b25900e50d117fd9b58589b3eb80d6p1@SLC6A5
2.65e-84FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_4241139a4054a028f93164d0adfa24cdp3@CRTAM
2.65e-84FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_4241139a4054a028f93164d0adfa24cdp3@CRTAM
3.05e-84FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_db8d02b3edff4009342e63333e8e2d35p1@BARHL1
3.05e-84FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_db8d02b3edff4009342e63333e8e2d35p1@BARHL1
4.43e-82FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_3268b04ca1bee777413dce455fa4d411p@chr4:117873850..117873861, -
4.43e-82FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_3268b04ca1bee777413dce455fa4d411p@chr6:152884391..152884402, -
4.43e-82FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_3268b04ca1bee777413dce455fa4d411p@chr6:152884391..152884402, -
4.43e-82FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_3268b04ca1bee777413dce455fa4d411p@chr4:117873850..117873861, -
6.69e-74FFCP PHASE1:Hg19::chr6:152884406..152884453,-#_caf113662b6819c09b1ca4cc9816acebp@chr6:152884406..152884453, -
6.69e-74FFCP PHASE2:Hg19::chr6:152884406..152884453,-#_caf113662b6819c09b1ca4cc9816acebp@chr6:152884406..152884453, -
1.11e-73FFCP PHASE2:Hg19::chr13:100311142..100311153,+#_43a3cfbf296cb1e4bebb309206e7712ep@chr13:100311142..100311153, +
1.11e-73FFCP PHASE1:Hg19::chr13:100311142..100311153,+#_43a3cfbf296cb1e4bebb309206e7712ep@chr13:100311142..100311153, +
4.59e-73FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_dd18b819a4e1600871b595bf954daeecp@chr10:130489605..130489614, -
4.59e-73FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_dd18b819a4e1600871b595bf954daeecp@chr10:130489605..130489614, -
3.5e-70FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_b73118162c9733ebe8622b98e163ac45p9@TRPM3
3.5e-70FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_b73118162c9733ebe8622b98e163ac45p9@TRPM3
1.26e-68FFCP PHASE2:Hg19::chr11:43855489..43855503,-#_df472c743af46a8a51283a6ea6b126aap1@ENST00000524643
1.26e-68FFCP PHASE1:Hg19::chr3:147110022..147110050,-#_df472c743af46a8a51283a6ea6b126aap8@ZIC4
1.26e-68FFCP PHASE2:Hg19::chr5:161112715..161112736,+#_df472c743af46a8a51283a6ea6b126aap1@GABRA6
1.26e-68FFCP PHASE2:Hg19::chr3:147110022..147110050,-#_df472c743af46a8a51283a6ea6b126aap8@ZIC4
1.26e-68FFCP PHASE1:Hg19::chr11:43855489..43855503,-#_df472c743af46a8a51283a6ea6b126aap1@ENST00000524643
1.26e-68FFCP PHASE1:Hg19::chr5:161112715..161112736,+#_df472c743af46a8a51283a6ea6b126aap1@GABRA6
1.45e-68FFCP PHASE1:Hg19::chr6:72922590..72922605,+#_fd1b5464299bd9b90231ba6c02e4a93ep5@RIMS1
1.45e-68FFCP PHASE2:Hg19::chr6:72922590..72922605,+#_fd1b5464299bd9b90231ba6c02e4a93ep5@RIMS1
1.67e-68FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_a4938906cf8c764e791eb7eee10a1458p17@BDNF
1.67e-68FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_a4938906cf8c764e791eb7eee10a1458p17@BDNF
6.16e-67FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_62cfb0554644f3da22502fa2fe6fdc4fp2@LOC100505835
6.16e-67FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_62cfb0554644f3da22502fa2fe6fdc4fp2@LOC100505835
5.11e-66FFCP PHASE1:Hg19::chr1:16366392..16366411,-#_86ae5f31b1717f7ea540967181fd5815p@chr1:16366392..16366411, -
5.11e-66FFCP PHASE1:Hg19::chr20:39790925..39790940,+#_86ae5f31b1717f7ea540967181fd5815p@chr20:39790925..39790940, +
5.11e-66FFCP PHASE1:Hg19::chr20:45061746..45061763,-#_86ae5f31b1717f7ea540967181fd5815p4@ELMO2
5.11e-66FFCP PHASE1:Hg19::chr11:122733033..122733052,+#_86ae5f31b1717f7ea540967181fd5815p4@CRTAM
5.11e-66FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_86ae5f31b1717f7ea540967181fd5815p4@AB384137
5.11e-66FFCP PHASE1:Hg19::chr5:161112654..161112669,+#_86ae5f31b1717f7ea540967181fd5815p2@GABRA6
5.11e-66FFCP PHASE1:Hg19::chr5:161112968..161112988,+#_86ae5f31b1717f7ea540967181fd5815p3@GABRA6
5.11e-66FFCP PHASE1:Hg19::chr6:127533959..127533972,-#_86ae5f31b1717f7ea540967181fd5815p@chr6:127533959..127533972, -
5.11e-66FFCP PHASE1:Hg19::chr6:127533978..127533993,-#_86ae5f31b1717f7ea540967181fd5815p@chr6:127533978..127533993, -
5.11e-66FFCP PHASE1:Hg19::chr6:34073743..34073761,-#_86ae5f31b1717f7ea540967181fd5815p1@GRM4
5.11e-66FFCP PHASE1:Hg19::chr6:72922614..72922626,+#_86ae5f31b1717f7ea540967181fd5815p19@RIMS1
5.11e-66FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_86ae5f31b1717f7ea540967181fd5815p29@RIMS1
5.11e-66FFCP PHASE1:Hg19::chr14:52168958..52169000,+#_86ae5f31b1717f7ea540967181fd5815p27@FRMD6
5.11e-66FFCP PHASE1:Hg19::chr14:60031159..60031181,-#_86ae5f31b1717f7ea540967181fd5815p1@ENST00000556936
5.11e-66FFCP PHASE1:Hg19::chr14:60049016..60049032,-#_86ae5f31b1717f7ea540967181fd5815p@chr14:60049016..60049032, -
5.11e-66FFCP PHASE1:Hg19::chr14:77582905..77582916,+#_86ae5f31b1717f7ea540967181fd5815p5@TMEM63C
5.11e-66FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_86ae5f31b1717f7ea540967181fd5815p1@KIAA1024
5.11e-66FFCP PHASE1:Hg19::chr15:81489280..81489292,+#_86ae5f31b1717f7ea540967181fd5815p15@IL16
5.11e-66FFCP PHASE1:Hg19::chr17:36720287..36720302,-#_86ae5f31b1717f7ea540967181fd5815p18@SRCIN1
5.11e-66FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_86ae5f31b1717f7ea540967181fd5815p22@CA10
5.11e-66FFCP PHASE1:Hg19::chr17:588423..588441,-#_86ae5f31b1717f7ea540967181fd5815p@chr17:588423..588441, -
5.11e-66FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_86ae5f31b1717f7ea540967181fd5815p11@RAB37
5.11e-66FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_86ae5f31b1717f7ea540967181fd5815p@chr17:72857611..72857619, -
5.11e-66FFCP PHASE1:Hg19::chr18:8783586..8783597,+#_86ae5f31b1717f7ea540967181fd5815p2@CCDC165
5.11e-66FFCP PHASE1:Hg19::chr18:8783637..8783650,+#_86ae5f31b1717f7ea540967181fd5815p@chr18:8783637..8783650, +
5.11e-66FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_86ae5f31b1717f7ea540967181fd5815p2@CU680380
5.11e-66FFCP PHASE2:Hg19::chr20:39790925..39790940,+#_86ae5f31b1717f7ea540967181fd5815p@chr20:39790925..39790940, +
5.11e-66FFCP PHASE2:Hg19::chr20:45061746..45061763,-#_86ae5f31b1717f7ea540967181fd5815p4@ELMO2
5.11e-66FFCP PHASE1:Hg19::chr2:149835088..149835109,+#_86ae5f31b1717f7ea540967181fd5815p9@KIF5C
5.11e-66FFCP PHASE1:Hg19::chr3:147125238..147125275,+#_86ae5f31b1717f7ea540967181fd5815p@chr3:147125238..147125275, +
5.11e-66FFCP PHASE1:Hg19::chr3:98519943..98519958,-#_86ae5f31b1717f7ea540967181fd5815p@chr3:98519943..98519958, -
5.11e-66FFCP PHASE2:Hg19::chr3:98519943..98519958,-#_86ae5f31b1717f7ea540967181fd5815p@chr3:98519943..98519958, -
5.11e-66FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_86ae5f31b1717f7ea540967181fd5815p1@KIAA1024
5.11e-66FFCP PHASE2:Hg19::chr15:81489280..81489292,+#_86ae5f31b1717f7ea540967181fd5815p15@IL16
5.11e-66FFCP PHASE2:Hg19::chr1:16366392..16366411,-#_86ae5f31b1717f7ea540967181fd5815p@chr1:16366392..16366411, -
5.11e-66FFCP PHASE2:Hg19::chr6:127533959..127533972,-#_86ae5f31b1717f7ea540967181fd5815p@chr6:127533959..127533972, -
5.11e-66FFCP PHASE2:Hg19::chr6:127533978..127533993,-#_86ae5f31b1717f7ea540967181fd5815p@chr6:127533978..127533993, -
5.11e-66FFCP PHASE2:Hg19::chr18:8783586..8783597,+#_86ae5f31b1717f7ea540967181fd5815p2@CCDC165
5.11e-66FFCP PHASE2:Hg19::chr18:8783637..8783650,+#_86ae5f31b1717f7ea540967181fd5815p@chr18:8783637..8783650, +
5.11e-66FFCP PHASE2:Hg19::chr6:34073743..34073761,-#_86ae5f31b1717f7ea540967181fd5815p1@GRM4
5.11e-66FFCP PHASE2:Hg19::chr6:72922614..72922626,+#_86ae5f31b1717f7ea540967181fd5815p19@RIMS1
5.11e-66FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_86ae5f31b1717f7ea540967181fd5815p29@RIMS1
5.11e-66FFCP PHASE2:Hg19::chr2:149835088..149835109,+#_86ae5f31b1717f7ea540967181fd5815p9@KIF5C
5.11e-66FFCP PHASE2:Hg19::chr11:122733033..122733052,+#_86ae5f31b1717f7ea540967181fd5815p4@CRTAM
5.11e-66FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_86ae5f31b1717f7ea540967181fd5815p4@AB384137
5.11e-66FFCP PHASE2:Hg19::chr17:36720287..36720302,-#_86ae5f31b1717f7ea540967181fd5815p18@SRCIN1
5.11e-66FFCP PHASE2:Hg19::chr5:161112654..161112669,+#_86ae5f31b1717f7ea540967181fd5815p2@GABRA6
5.11e-66FFCP PHASE2:Hg19::chr5:161112968..161112988,+#_86ae5f31b1717f7ea540967181fd5815p3@GABRA6
5.11e-66FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_86ae5f31b1717f7ea540967181fd5815p22@CA10
5.11e-66FFCP PHASE2:Hg19::chr17:588423..588441,-#_86ae5f31b1717f7ea540967181fd5815p@chr17:588423..588441, -
5.11e-66FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_86ae5f31b1717f7ea540967181fd5815p11@RAB37
5.11e-66FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_86ae5f31b1717f7ea540967181fd5815p@chr17:72857611..72857619, -
5.11e-66FFCP PHASE2:Hg19::chr3:147125238..147125275,+#_86ae5f31b1717f7ea540967181fd5815p@chr3:147125238..147125275, +
5.11e-66FFCP PHASE2:Hg19::chr14:52168958..52169000,+#_86ae5f31b1717f7ea540967181fd5815p27@FRMD6
5.11e-66FFCP PHASE2:Hg19::chr14:60031159..60031181,-#_86ae5f31b1717f7ea540967181fd5815p1@ENST00000556936
5.11e-66FFCP PHASE2:Hg19::chr14:60049016..60049032,-#_86ae5f31b1717f7ea540967181fd5815p@chr14:60049016..60049032, -
5.11e-66FFCP PHASE2:Hg19::chr14:77582905..77582916,+#_86ae5f31b1717f7ea540967181fd5815p5@TMEM63C
5.11e-66FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_86ae5f31b1717f7ea540967181fd5815p2@CU680380
1.63e-65FFCP PHASE1:Hg19::chr10:62149532..62149539,-#_70ce0fdbd0b6bef9921be0d1bf3cd7d3p38@ANK3
1.63e-65FFCP PHASE2:Hg19::chr10:62149532..62149539,-#_70ce0fdbd0b6bef9921be0d1bf3cd7d3p38@ANK3
2.29e-65FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_f9cb0ca4b99e09695ae0d64d7fdc9037p@chrX:106692537..106692551, +
2.29e-65FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_f9cb0ca4b99e09695ae0d64d7fdc9037p@chrX:106692537..106692551, +
8.77e-62FFCP PHASE1:Hg19::chr7:153445213..153445251,+#_104065991d5d4f166b6e56d05d1bca0a+, p@chr7:153445213..153445251
8.77e-62FFCP PHASE2:Hg19::chr7:153445213..153445251,+#_104065991d5d4f166b6e56d05d1bca0ap@chr7:153445213..153445251, +
9.7e-62FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_7c18808ad16c87f726ae6ad43ddf9918p@chr9:8779377..8779397, -
9.7e-62FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_7c18808ad16c87f726ae6ad43ddf9918p@chr9:8779377..8779397, -
2.04e-59FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_9faeb273febbff39fd7f3e5720aadf1ep1@TPH2
2.04e-59FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_9faeb273febbff39fd7f3e5720aadf1ep1@TPH2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior part of the brain consisting of the cerebellum and medulla oblongata.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from hindbrain neural tube (TAO:0007043)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.