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UBERON:0005564

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Name:gonad primordium
Namespace:FANTOM
Definition:"Portion of tissue that gives rise to the immature gonad." [ZFA:0001262]
Xrefs:
links:

EFO:0003651
EHDAA:5927
EMAPA:17204
RETIRED_EHDAA2:0002148
TAO:0001262
WBbt:0008366

ZFA:0001262
Synonyms: "gonadal primordium" EXACT [ZFA:0001262]
"undifferentiated gonad" EXACT [ZFA:0001262]
Comments:Taxon notes: this is a very broad grouping class
Subset: grouping_class
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0000990(reproductive system)



Children

develops from:UBERON:0000991 (gonad)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005564 (gonad primordium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.75e-64FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_8d45aaecd16f58e31906a402b61d9121p7@Tulp2
6.75e-64FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_8d45aaecd16f58e31906a402b61d9121p7@Tulp2
1.36e-62FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_99347e7f71f378f5f9ea0ff4712db82dp2@Slc25a31
1.36e-62FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_99347e7f71f378f5f9ea0ff4712db82dp2@Slc25a31
1.69e-62FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_bb3720bff25cdd8728f7b6198baa830dp1@Asz1
1.69e-62FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_bb3720bff25cdd8728f7b6198baa830dp1@Asz1
2.43e-62FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_484e0dd9f2ab1494fb1e97b1685a6d4ep@chr12:31775417..31775434, -
2.43e-62FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_484e0dd9f2ab1494fb1e97b1685a6d4ep@chr12:31775417..31775434, -
6.68e-62FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_315d63ecb1e4177da7612134fe6cac26p6@Folr1
6.68e-62FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_315d63ecb1e4177da7612134fe6cac26p6@Folr1
4.74e-60FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_a8f3e83e1e7782693309d1355bb80dd6p1@Mov10l1
4.74e-60FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_a8f3e83e1e7782693309d1355bb80dd6p1@Mov10l1
1.66e-59FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_cfeb16fba5a0b3943c2b86eee11e259bp1@Sycp1
1.66e-59FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_cfeb16fba5a0b3943c2b86eee11e259bp1@Sycp1
7.89e-59FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_69ef6db13cb134c871eb3c2639f528abp2@Asz1
7.89e-59FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_69ef6db13cb134c871eb3c2639f528abp2@Asz1
4.05e-58FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_de680bc26228c2b124464dc2a8b95d2fp4@STAR
4.05e-58FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_de680bc26228c2b124464dc2a8b95d2fp4@STAR
5.06e-58FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_b8e1b7a0d1129e640ade52ea1b7cbc06p@chr15:102277099..102277126, +
5.06e-58FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_b8e1b7a0d1129e640ade52ea1b7cbc06p@chr15:102277099..102277126, +
5.18e-58FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_0912aa09ddb63f8e6176dca6cab52e30p1@Mael
5.18e-58FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_0912aa09ddb63f8e6176dca6cab52e30p1@Mael
1.46e-57FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_897fa149f5f5f196a23c055aef63220ap3@Cst9
1.46e-57FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_897fa149f5f5f196a23c055aef63220ap3@Cst9
1.46e-57FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_897fa149f5f5f196a23c055aef63220ap22@Rgs3
1.46e-57FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_897fa149f5f5f196a23c055aef63220ap22@Rgs3
1.91e-57FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_6981d4b4c994bf48d264d6c4efb0f9a7p1@Fkbp6
1.91e-57FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_6981d4b4c994bf48d264d6c4efb0f9a7p1@Fkbp6
1.91e-57FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_6981d4b4c994bf48d264d6c4efb0f9a7p@chr7:149469129..149469146, +
1.91e-57FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_6981d4b4c994bf48d264d6c4efb0f9a7p@chr7:149469129..149469146, +
2.3e-57FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_6db4a76c5b57e59f5a5cd72ffa7c6bb5p1@Mir202
2.3e-57FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_6db4a76c5b57e59f5a5cd72ffa7c6bb5p1@Mir202
1.44e-56FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_9b5539e4b4ab440c3ff169cb59f36e0bp1@Hormad1
1.44e-56FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_9b5539e4b4ab440c3ff169cb59f36e0bp1@Hormad1
1.57e-56FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_fc298c2b0385fa1684caea71444a748fp1@Hist1h2aa
1.57e-56FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_fc298c2b0385fa1684caea71444a748fp1@Hist1h2aa
1.84e-56FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_cf687f9e610d337dcfeb2523743e0232p2@KLF17
1.84e-56FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_cf687f9e610d337dcfeb2523743e0232p2@KLF17
1.24e-55FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_664d356069938f29411f5bb2701b8168p1@Piwil2
1.24e-55FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_664d356069938f29411f5bb2701b8168p1@Piwil2
1.82e-55FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_fcd9a6378981872733052d7e819b9aadp1@Tex12
1.82e-55FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_fcd9a6378981872733052d7e819b9aadp1@Tex12
1.99e-55FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_73dabf8db76734b09e1c66e65d517874p1@Cst12
1.99e-55FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_73dabf8db76734b09e1c66e65d517874p1@Cst12
2.92e-55FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_4edb5218dc7bba38f526d63378d808a6p1@Gm949
2.92e-55FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_4edb5218dc7bba38f526d63378d808a6p1@Gm949
1.21e-54FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_1b83600715a550b260db67fa0656cd57p1@Fam178b
1.21e-54FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_1b83600715a550b260db67fa0656cd57p1@Fam178b
2.26e-54FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_790ed3ac1c5295be6ae0e319caf2cee3p1@Dazl
2.26e-54FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_790ed3ac1c5295be6ae0e319caf2cee3p1@Dazl
2.54e-54FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_a165d488730d3bf177e38864f03e6d68p1@Exoc3l2
2.54e-54FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_a165d488730d3bf177e38864f03e6d68p1@Exoc3l2
6.89e-54FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_e0dff54e58867a54531d26715ebd1a6dp1@Tdrd12
6.89e-54FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_e0dff54e58867a54531d26715ebd1a6dp1@Tdrd12
7.61e-54FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_0bb3927b6081522fc4a0dfd6890d7f18p4@Taf9b
7.61e-54FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_0bb3927b6081522fc4a0dfd6890d7f18p4@Taf9b
2.73e-53FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_59c3ebd5e3e8df328ff92c2701db906cp3@Hsd17b3
2.73e-53FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_59c3ebd5e3e8df328ff92c2701db906cp2@Exoc3l2
2.73e-53FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_59c3ebd5e3e8df328ff92c2701db906cp2@Exoc3l2
2.73e-53FFCP PHASE2:Mm9::chr13:64190487..64190500,-#_59c3ebd5e3e8df328ff92c2701db906cp3@Hsd17b3
3.37e-53FFCP PHASE2:Mm9::chr19:25580272..25580305,+#_0653884a0df1b6be97a48235d80b8162p3@Dmrt1
3.37e-53FFCP PHASE1:Mm9::chr19:25580272..25580305,+#_0653884a0df1b6be97a48235d80b8162p3@Dmrt1
4.16e-53FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_40a089f2d6d279ff282a5b058f108254p1@Tktl1
4.16e-53FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_40a089f2d6d279ff282a5b058f108254p1@Tktl1
4.63e-53FFCP PHASE2:Mm9::chr9:50369425..50369436,-#_9a26fbcd570874fe03571efff700d959p3@Tex12
4.63e-53FFCP PHASE1:Mm9::chr9:50369425..50369436,-#_9a26fbcd570874fe03571efff700d959p3@Tex12
6.36e-53FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_0dc156b89b7f75df809d4808cf62ee99p@chr5:26334211..26334241, +
6.36e-53FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_0dc156b89b7f75df809d4808cf62ee99p@chr5:26334211..26334241, +
8.31e-53FFCP PHASE1:Mm9::chr5:135825912..135825919,-#_f31808c09c46dcd6e9c86ac2ab842a03p2@Fkbp6
8.31e-53FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_f31808c09c46dcd6e9c86ac2ab842a03p1@Sohlh1
8.31e-53FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr11:69431224..69431241, -
8.31e-53FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr8:26314366..26314395, -
8.31e-53FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chrX:93160409..93160432, -
8.31e-53FFCP PHASE1:Mm9::chr7:104599810..104599819,+#_f31808c09c46dcd6e9c86ac2ab842a03p3@Kctd14
8.31e-53FFCP PHASE2:Mm9::chr14:63940369..63940380,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr14:63940369..63940380, -
8.31e-53FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr16:37843615..37843636, -
8.31e-53FFCP PHASE2:Mm9::chr5:135825912..135825919,-#_f31808c09c46dcd6e9c86ac2ab842a03p2@Fkbp6
8.31e-53FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_f31808c09c46dcd6e9c86ac2ab842a03-, p@chr11:69431224..69431241
8.31e-53FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chrX:93160409..93160432, -
8.31e-53FFCP PHASE1:Mm9::chr14:63940369..63940380,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr14:63940369..63940380, -
8.31e-53FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr16:37843615..37843636, -
8.31e-53FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr8:26314366..26314395, -
8.31e-53FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_f31808c09c46dcd6e9c86ac2ab842a03p1@Sohlh1
8.31e-53FFCP PHASE2:Mm9::chr7:104599810..104599819,+#_f31808c09c46dcd6e9c86ac2ab842a03p3@Kctd14
8.63e-53FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_bf33b0310e3357c3349a553986462e26p5@Gstm6
8.63e-53FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_bf33b0310e3357c3349a553986462e26p5@Gstm6
1.03e-52FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_445e3db5463a6c3095e8bdf044b835a8p2@Kctd14
1.03e-52FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_445e3db5463a6c3095e8bdf044b835a8p2@Kctd14
1.84e-52FFCP PHASE2:Mm9::chr7:52741649..52741686,+#_e3193f4204d8aeadfcadb1b135ecc3ebp3@Tulp2
1.84e-52FFCP PHASE1:Mm9::chr7:52741649..52741686,+#_e3193f4204d8aeadfcadb1b135ecc3ebp3@Tulp2
2.15e-52FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_86a9fee7bf02535cb5cdb35804633323p3@Fkbp5
2.15e-52FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_86a9fee7bf02535cb5cdb35804633323p3@Fkbp5
4.88e-52FFCP PHASE1:Mm9::chr6:120726529..120726551,+#_439359a3935b3dbc2884a36d6a8dbead+, p@chr6:120726529..120726551
4.88e-52FFCP PHASE2:Mm9::chr6:120726529..120726551,+#_439359a3935b3dbc2884a36d6a8dbeadp@chr6:120726529..120726551, +
1.03e-51FFCP PHASE1:Mm9::chr1:182312504..182312531,+#_df9ff6b508aa4b5ea6652d6461401fcdp@chr1:182312504..182312531, +
1.03e-51FFCP PHASE2:Mm9::chr1:182312504..182312531,+#_df9ff6b508aa4b5ea6652d6461401fcdp@chr1:182312504..182312531, +
1.67e-51FFCP PHASE2:Mm9::chrX:98989738..98989756,-#_3c65c6958429da0d3833caad3509da65-, p@chrX:98989738..98989756
1.67e-51FFCP PHASE1:Mm9::chrX:98989738..98989756,-#_3c65c6958429da0d3833caad3509da65p@chrX:98989738..98989756, -
7.03e-51FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_2102572fa91a7882737c40288d4ad910p1@Ccdc152
7.03e-51FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_2102572fa91a7882737c40288d4ad910p1@Ccdc152










Property "Property value" (as page type) with input value "UBPROP:0000001 "Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.