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UBERON:0001048

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Name:primordium
Namespace:FANTOM
Definition:"Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
Xrefs:
links:

AEO:0000171
BTO:0001886
EFO:0001652
EHDAA2:0003171
FBbt:00005495
FMA:86589
MAT:0000482
ncithesaurus:Primordium

XAO:0003043
Synonyms: "bud" RELATED []
"placode" RELATED [FBbt:00005495]
"rudiment" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000468(multi-cellular organism)



Children

is a:UBERON:0003084 (heart primordium),UBERON:0003091 (thyroid primordium),UBERON:0003921 (pancreas primordium),UBERON:0005085 (ectodermal placode),UBERON:0005427 (corneal primordium),UBERON:0005562 (thymus primordium),UBERON:0005564 (gonad primordium),UBERON:0005597 (lung primordium),UBERON:0005732 (limb/fin field),UBERON:0006215 (rhombic lip),UBERON:0006242 (gall bladder primordium),UBERON:0006256 (knee joint primordium),UBERON:0006293 (spleen primordium),UBERON:0007497 (developing epithelial placode),UBERON:0007689 (thyroid diverticulum),UBERON:0008801 (parotid gland primordium),UBERON:0008947 (respiratory primordium),UBERON:0010375 (pancreas dorsal primordium),UBERON:0014903 (primordial vasculature),UBERON:0017651 (salivary gland primordium)
part of:FF:0000243 (chicken wing bud day 3 HH20)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001048 (primordium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.75e-21FFCP PHASE2:Mm9::chr10:92185101..92185154,-#_e8da2d34dde39a870ce59687c8711e0ep1@Nedd1
3.75e-21FFCP PHASE1:Mm9::chr10:92185101..92185154,-#_e8da2d34dde39a870ce59687c8711e0ep1@Nedd1
1.75e-20FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_6a3e076594704d27313ab7c38f9192adp2@SEPT9
1.75e-20FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_6a3e076594704d27313ab7c38f9192adp2@SEPT9
2.34e-20FFCP PHASE1:Mm9::chr9:51856351..51856424,+#_58e7349410d9ebad65a56cc4f2297af9p1@Rdx
2.34e-20FFCP PHASE2:Mm9::chr9:51856351..51856424,+#_58e7349410d9ebad65a56cc4f2297af9p1@Rdx
4.91e-19FFCP PHASE1:Hg19::chr12:53298841..53298867,-#_7e75447516780c98d4c5e3165b1c3923p1@KRT8
4.91e-19FFCP PHASE2:Hg19::chr12:53298841..53298867,-#_7e75447516780c98d4c5e3165b1c3923p1@KRT8
5.31e-19FFCP PHASE1:Mm9::chr4:133742934..133743005,-#_99527963ee14c1feb8a8137039e8c8c4p1@Ccdc21
5.31e-19FFCP PHASE2:Mm9::chr4:133742934..133743005,-#_99527963ee14c1feb8a8137039e8c8c4p1@Ccdc21
1.26e-18FFCP PHASE2:Hg19::chr11:77734260..77734331,-#_f94862d0ad1d74d985b6dcc151da0c22p1@KCTD14
1.26e-18FFCP PHASE1:Hg19::chr11:77734260..77734331,-#_f94862d0ad1d74d985b6dcc151da0c22p1@KCTD14
4.54e-18FFCP PHASE1:Mm9::chr18:32719511..32719541,-#_600f1228f4174425245c686a055c6961p2@Gypc
4.54e-18FFCP PHASE2:Mm9::chr18:32719511..32719541,-#_600f1228f4174425245c686a055c6961p2@Gypc
4.69e-18FFCP PHASE1:Mm9::chr1:167608953..167608974,-#_07e8a42d3b0cc0e6e2d886d60cc80441p@chr1:167608953..167608974, -
4.69e-18FFCP PHASE2:Mm9::chr1:167608953..167608974,-#_07e8a42d3b0cc0e6e2d886d60cc80441-, p@chr1:167608953..167608974
9.14e-18FFCP PHASE1:Hg19::chr12:53342893..53342911,+#_2c1ae9d6d3add7f1a4dabe8192b46cdep1@KRT18
9.14e-18FFCP PHASE2:Hg19::chr12:53342893..53342911,+#_2c1ae9d6d3add7f1a4dabe8192b46cdep1@KRT18
9.65e-18FFCP PHASE1:Mm9::chr4:135426317..135426318,+#_066264c6bb60f44bf9ae6f4f19270e07p@chr4:135426317..135426318, +
9.65e-18FFCP PHASE2:Mm9::chr4:135426317..135426318,+#_066264c6bb60f44bf9ae6f4f19270e07p@chr4:135426317..135426318, +
1.06e-17FFCP PHASE1:Mm9::chr17:45732452..45732524,-#_a101aaeb2e3f0e16169f6153e092971fp1@Slc29a1
1.06e-17FFCP PHASE2:Mm9::chr17:45732452..45732524,-#_a101aaeb2e3f0e16169f6153e092971fp1@Slc29a1
1.08e-17FFCP PHASE1:Mm9::chr6:136806111..136806131,-#_6d907976250c4fc6093799992a02bd48p1@Art4
1.08e-17FFCP PHASE2:Mm9::chr6:136806111..136806131,-#_6d907976250c4fc6093799992a02bd48p1@Art4
1.14e-17FFCP PHASE2:Mm9::chr13:68720964..68721024,-#_e66526b3ca1d80a59ab95e2653856e26p1@Mtrr
1.14e-17FFCP PHASE1:Mm9::chr13:68720964..68721024,-#_e66526b3ca1d80a59ab95e2653856e26p1@Mtrr
1.68e-17FFCP PHASE2:Mm9::chr8:109207008..109207024,+#_923f81df8daaccbf4798428185895127p3@Tmco7
1.68e-17FFCP PHASE1:Mm9::chr8:109207008..109207024,+#_923f81df8daaccbf4798428185895127p3@Tmco7
1.87e-17FFCP PHASE2:Mm9::chr1:74485466..74485476,-#_e5ae4acd79e4016c5037b302bc018712p@chr1:74485466..74485476, -
1.87e-17FFCP PHASE1:Mm9::chr1:74485466..74485476,-#_e5ae4acd79e4016c5037b302bc018712p@chr1:74485466..74485476, -
2.85e-17FFCP PHASE1:Mm9::chr3:108167831..108167861,+#_64099885f083f378a2ae725f477b0993p1@Mybphl
2.85e-17FFCP PHASE2:Mm9::chr3:108167831..108167861,+#_64099885f083f378a2ae725f477b0993p1@Mybphl
2.92e-17FFCP PHASE2:Hg19::chr8:11561684..11561751,+#_9071da704853f3dea3f649b01316778cp1@GATA4
2.92e-17FFCP PHASE1:Hg19::chr8:11561684..11561751,+#_9071da704853f3dea3f649b01316778cp1@GATA4
4.4e-17FFCP PHASE1:Hg19::chr12:52627019..52627037,+#_45dbb178b073e162818d437e016c2f47p1@KRT7
4.4e-17FFCP PHASE2:Hg19::chr12:52627019..52627037,+#_45dbb178b073e162818d437e016c2f47p1@KRT7
4.64e-17FFCP PHASE2:Mm9::chr18:77953185..77953240,-#_8b1729567e3530b0c992e19c397fed8cp3@8030462N17Rik
4.64e-17FFCP PHASE1:Mm9::chr18:77953185..77953240,-#_8b1729567e3530b0c992e19c397fed8cp3@8030462N17Rik
6.02e-17FFCP PHASE1:Mm9::chr6:119467972..119467977,-#_2005f54fd96c670ee10bfa2821676ecbp@chr6:119467972..119467977, -
6.02e-17FFCP PHASE2:Mm9::chr6:119467972..119467977,-#_2005f54fd96c670ee10bfa2821676ecbp@chr6:119467972..119467977, -
1.68e-16FFCP PHASE2:Mm9::chr5:101249948..101249994,-#_3906a83f940724b7e3dddf5e90cc6d40p1@Fam175a
1.68e-16FFCP PHASE1:Mm9::chr5:101249948..101249994,-#_3906a83f940724b7e3dddf5e90cc6d40p1@Fam175a
2.07e-16FFCP PHASE1:Mm9::chr14:63989446..63989459,+#_e485437f399df6044fabae395e4dab00p@chr14:63989446..63989459, +
2.07e-16FFCP PHASE2:Mm9::chr14:63989446..63989459,+#_e485437f399df6044fabae395e4dab00p@chr14:63989446..63989459, +
2.54e-16FFCP PHASE1:Mm9::chr9:62198973..62198977,+#_1e475515e414bab3f17ffb75c56cbe33p@chr9:62198973..62198977, +
2.54e-16FFCP PHASE2:Mm9::chr9:62198973..62198977,+#_1e475515e414bab3f17ffb75c56cbe33p@chr9:62198973..62198977, +
2.95e-16FFCP PHASE1:Mm9::chr12:81210520..81210566,-#_566097e566e68a751ae547177d90389dp@chr12:81210520..81210566, -
2.95e-16FFCP PHASE2:Mm9::chr12:81210520..81210566,-#_566097e566e68a751ae547177d90389dp@chr12:81210520..81210566, -
3.4e-16FFCP PHASE2:Mm9::chr5:120285161..120285176,+#_c56b0d9cbc6abbce755a311c2a4d2a1ap2@Tbx5
3.4e-16FFCP PHASE1:Mm9::chr5:120285161..120285176,+#_c56b0d9cbc6abbce755a311c2a4d2a1ap2@Tbx5
4.55e-16FFCP PHASE2:Mm9::chr11:100665286..100665300,-#_04d419c28f6b86eec8ca2b683aa6fbb8p@chr11:100665286..100665300, -
4.55e-16FFCP PHASE1:Mm9::chr11:100665286..100665300,-#_04d419c28f6b86eec8ca2b683aa6fbb8p@chr11:100665286..100665300, -
6.28e-16FFCP PHASE1:Mm9::chr3:115832367..115832382,-#_fde1d2ee07024fa754ab1293d15ee004p1@Vcam1
6.28e-16FFCP PHASE2:Mm9::chr3:115832367..115832382,-#_fde1d2ee07024fa754ab1293d15ee004p1@Vcam1
6.31e-16FFCP PHASE2:Mm9::chr1:180267213..180267309,+#_5901ee493584c5001f4bc5435f9fce53p@chr1:180267213..180267309, +
6.31e-16FFCP PHASE1:Mm9::chr1:180267213..180267309,+#_5901ee493584c5001f4bc5435f9fce53p@chr1:180267213..180267309, +
6.69e-16FFCP PHASE1:Mm9::chr11:101108274..101108295,+#_ab2670b2a5681f7565697639a26243d8p4@Ramp2
6.69e-16FFCP PHASE1:Hg19::chr11:76494393..76494407,+#_26192bc917f94dd40ebb4ec95af569d1p2@TSKU
6.69e-16FFCP PHASE2:Mm9::chr11:101108274..101108295,+#_ab2670b2a5681f7565697639a26243d8p4@Ramp2
6.69e-16FFCP PHASE2:Hg19::chr11:76494393..76494407,+#_26192bc917f94dd40ebb4ec95af569d1p2@TSKU
1.04e-15FFCP PHASE2:Hg19::chr12:33049691..33049756,-#_6403515d62a563628046f6092010d9b2p1@PKP2
1.04e-15FFCP PHASE1:Hg19::chr12:33049691..33049756,-#_6403515d62a563628046f6092010d9b2p1@PKP2
1.43e-15FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_f6b91c444bf352027925018c52c7bcc3p1@NR5A1
1.43e-15FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_f6b91c444bf352027925018c52c7bcc3p1@NR5A1
1.7e-15FFCP PHASE2:Mm9::chr1:93041634..93041678,+#_04db951dfdd960bc0a5c85b852ee03e4p1@Rbm44
1.7e-15FFCP PHASE1:Mm9::chr1:93041634..93041678,+#_04db951dfdd960bc0a5c85b852ee03e4p1@Rbm44
1.95e-15FFCP PHASE2:Mm9::chr15:44289044..44289063,+#_34a151a8727a039497fbfb0316978506p2@Pkhd1l1
1.95e-15FFCP PHASE1:Mm9::chr15:44289044..44289063,+#_34a151a8727a039497fbfb0316978506p2@Pkhd1l1
2.09e-15FFCP PHASE1:Mm9::chr14:62250725..62250730,-#_84ebd762d8956cc6d04d601cff79dbbep1@Mir16-1
2.09e-15FFCP PHASE2:Mm9::chr14:62250725..62250730,-#_84ebd762d8956cc6d04d601cff79dbbep1@Mir16-1
2.82e-15FFCP PHASE1:Mm9::chr5:120285130..120285141,+#_83211ac062553ca5e6ad76e1007013dfp3@Tbx5
2.82e-15FFCP PHASE2:Mm9::chr5:120285130..120285141,+#_83211ac062553ca5e6ad76e1007013dfp3@Tbx5
2.89e-15FFCP PHASE1:Mm9::chr12:29308215..29308236,-#_669aad2bd4550cb58d187d78b61edf3cp4@Colec11
2.89e-15FFCP PHASE2:Mm9::chr12:29308215..29308236,-#_669aad2bd4550cb58d187d78b61edf3cp4@Colec11
3.7e-15FFCP PHASE2:Mm9::chr2:78724457..78724461,+#_fb1eeaa05c3cde7cd0530631bce61a82p@chr2:78724457..78724461, +
3.7e-15FFCP PHASE1:Mm9::chr2:78724457..78724461,+#_fb1eeaa05c3cde7cd0530631bce61a82p@chr2:78724457..78724461, +
3.99e-15FFCP PHASE1:Mm9::chr14:52780600..52780604,-#_62f19d016e73e6a2b6ffb0d9ed521be9p@chr14:52780600..52780604, -
3.99e-15FFCP PHASE2:Mm9::chr14:52780600..52780604,-#_62f19d016e73e6a2b6ffb0d9ed521be9p@chr14:52780600..52780604, -
4.44e-15FFCP PHASE2:Mm9::chr1:167609049..167609071,-#_cd52b0cdb13db5774475c459d6b505cap@chr1:167609049..167609071, -
4.44e-15FFCP PHASE1:Mm9::chr1:167609049..167609071,-#_cd52b0cdb13db5774475c459d6b505cap@chr1:167609049..167609071, -
4.9e-15FFCP PHASE2:Mm9::chr9:32503590..32503680,+#_87d6326a1c955594eb546fad5819723dp1@Ets1
4.9e-15FFCP PHASE1:Mm9::chr9:32503590..32503680,+#_87d6326a1c955594eb546fad5819723dp1@Ets1
5.1e-15FFCP PHASE2:Hg19::chr6:34725181..34725195,+#_4749461441e8c920cb5b5eefc39cc09cp2@SNRPC
5.1e-15FFCP PHASE1:Hg19::chr6:34725181..34725195,+#_4749461441e8c920cb5b5eefc39cc09cp2@SNRPC
5.2e-15FFCP PHASE1:Mm9::chr17:32342934..32342939,-#_359ee7ceb61405a99ffae129be084906p@chr17:32342934..32342939, -
5.2e-15FFCP PHASE2:Mm9::chr17:32342934..32342939,-#_359ee7ceb61405a99ffae129be084906p@chr17:32342934..32342939, -
6.16e-15FFCP PHASE1:Mm9::chr2:103412278..103412282,+#_c296212f39774a57cf1cf7d4f6c6b1c4p@chr2:103412278..103412282, +
6.16e-15FFCP PHASE2:Mm9::chr2:103412278..103412282,+#_c296212f39774a57cf1cf7d4f6c6b1c4p@chr2:103412278..103412282, +
6.94e-15FFCP PHASE2:Mm9::chr13:41520412..41520465,-#_9b40bf985861de716e2259c5baed05e0p@chr13:41520412..41520465, -
6.94e-15FFCP PHASE1:Mm9::chr13:41520412..41520465,-#_9b40bf985861de716e2259c5baed05e0p@chr13:41520412..41520465, -
8.42e-15FFCP PHASE2:Hg19::chr20:60942361..60942376,-#_1403ba4fbc94e51d84a24feaec9fb50ep1@LAMA5
8.42e-15FFCP PHASE1:Hg19::chr20:60942361..60942376,-#_1403ba4fbc94e51d84a24feaec9fb50ep1@LAMA5
1.13e-14FFCP PHASE2:Hg19::chr19:45312347..45312374,+#_3bf62d5d05944af424bfdc8c29384c90p1@BCAM
1.13e-14FFCP PHASE1:Hg19::chr19:45312347..45312374,+#_3bf62d5d05944af424bfdc8c29384c90p1@BCAM
1.15e-14FFCP PHASE2:Mm9::chr11:94163794..94163797,-#_73fa44a1a0377fd40b850273d4bd7316p@chr11:94163794..94163797, -
1.15e-14FFCP PHASE1:Mm9::chr11:94163794..94163797,-#_73fa44a1a0377fd40b850273d4bd7316p@chr11:94163794..94163797, -
1.31e-14FFCP PHASE1:Mm9::chr1:193389782..193389792,-#_f13bfb0cf8b9771f3ac302d62bbd2d30p@chr1:193389782..193389792, -
1.31e-14FFCP PHASE2:Mm9::chr1:193389782..193389792,-#_f13bfb0cf8b9771f3ac302d62bbd2d30p@chr1:193389782..193389792, -
1.43e-14FFCP PHASE1:Mm9::chr12:29308178..29308194,-#_2bbbf2cc1a8ce32cd2d8b98704513e40p2@Colec11
1.43e-14FFCP PHASE2:Mm9::chr12:29308178..29308194,-#_2bbbf2cc1a8ce32cd2d8b98704513e40p2@Colec11