UBERON:0010707
From FANTOM5_SSTAR
Name: | appendage girdle complex | ||
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Namespace: | FANTOM | ||
Definition: | "An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003] | ||
Xrefs: |
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Synonyms: |
"appendage complex" EXACT [UBERON:cjm] "appendage-girdle complex" EXACT [UBERON:cjm] "girdle plus limb or fin" EXACT [UBERON:cjm] "limb" RELATED INCONSISTENT [FMA:7182] | ||
Comments: | It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region) | ||
Created by: | haendel | ||
Creation date: | 2012-04-23T10:46:51Z |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0000475(organism subdivision),UBERON:0015212(lateral structure) |
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Children
is a: | UBERON:0010708 (pectoral complex),UBERON:0010709 (pelvic complex) |
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part of: | UBERON:0004708 (paired limb/fin),UBERON:0010740 (bone of appendage girdle complex) |
Ontology Tree: Loaded from BioPortal
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010707 (appendage girdle complex), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr22:25535147..25535150, + |
5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:186423235..186423240, - |
5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:97176812..97176813, + |
5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:85166508..85166512, + |
5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:179396370..179396375, - |
5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr11:3691037..3691040, + |
5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:97176812..97176813, + |
5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:85166508..85166512, + |
5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:76859417..76859418, + |
5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr11:3691037..3691040, + |
5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr7:128483294..128483304, + |
5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:79759687..79759690, + |
5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr7:128483294..128483304, + |
5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:186423235..186423240, - |
5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:79759687..79759690, + |
5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:179396370..179396375, - |
5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:76859417..76859418, + |
5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr22:25535147..25535150, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p77@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179399371..179399376, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:117747577..117747580, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p46@XIRP2 |
9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179514306..179514308, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152525581..152525588, - |
9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr3:188070178..188070183, + |
9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p1@ENST00000430244, p1@uc003tvu.2 |
9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:175125123..175125125, + |
9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr15:51060095..51060101, + |
9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:175125123..175125125, + |
9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:51335579..51335582, + |
9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p46@XIRP2 |
9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p54@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p104@XIRP2 |
9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr22:36000901..36000903, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:172318159..172318160, + |
9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr6:33716557..33716600, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152499727..152499734, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152525581..152525588, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152553958..152553964, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p104@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152520248..152520253, - |
9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:114067922..114067931, - |
9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:119487319..119487331, - |
9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr8:144542829..144542857, - |
9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr8:144542829..144542857, - |
9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:145478051..145478060, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p108@XIRP2 |
9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152553958..152553964, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p7@FLJ36848 |
9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152499727..152499734, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p93@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr15:51060095..51060101, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152520248..152520253, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p108@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152534468..152534476, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01 | +, p@chr5:137206180..137206187 |
9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:119487319..119487331, - |
9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr6:33716557..33716600, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179514306..179514308, - |
9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr22:36000901..36000903, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:137206180..137206187, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p7@FLJ36848 |
9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:145478051..145478060, - |
9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:114067922..114067931, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:117747577..117747580, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152534468..152534476, - |
9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr3:188070178..188070183, + |
9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:172318159..172318160, + |
9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p1@ENST00000430244, p1@uc003tvu.2 |
9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p54@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:51335579..51335582, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p93@XIRP2 |
9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p77@XIRP2 |
9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179399371..179399376, - |
2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_48dad317ebcdb7464f57400779a939f1 | p@chr6:125535391..125535409, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_48dad317ebcdb7464f57400779a939f1 | p@chr10:97037060..97037066, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1 | p@chr12:69653866..69653876, + |
2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1 | p@chr22:26299595..26299605, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:152590465..152590472, - |
2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_48dad317ebcdb7464f57400779a939f1 | p@chr18:8608021..8608050, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_48dad317ebcdb7464f57400779a939f1 | p@chr10:29918007..29918031, - |
2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_48dad317ebcdb7464f57400779a939f1 | p@chr21:47769234..47769239, + |
2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_48dad317ebcdb7464f57400779a939f1 | p@chr18:8608021..8608050, + |
2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1 | +, p@chr22:26299595..26299605 |
2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:152566311..152566321, - |
2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1 | p@chr12:69653866..69653876, + |
2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_48dad317ebcdb7464f57400779a939f1 | p38@CLIP1 |
2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_48dad317ebcdb7464f57400779a939f1 | p@chr21:47769234..47769239, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_48dad317ebcdb7464f57400779a939f1 | -, p@chr2:152590465..152590472 |
2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_48dad317ebcdb7464f57400779a939f1 | p27@CLIP4 |
2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1 | p@chr3:69168368..69168389, - |
2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_48dad317ebcdb7464f57400779a939f1 | p@chr6:125535391..125535409, + |
2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_48dad317ebcdb7464f57400779a939f1 | p@chr12:102079632..102079647, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_48dad317ebcdb7464f57400779a939f1 | p@chr3:35732964..35732965, + |
2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:179656442..179656451, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1 | p73@XIRP2 |
2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:179656442..179656451, - |
2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_48dad317ebcdb7464f57400779a939f1 | p38@CLIP1 |
2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1 | p@chr3:69168368..69168389, - |
2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1 | p73@XIRP2 |