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UBERON:0004708

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Name:paired limb/fin
Namespace:FANTOM
Xrefs:
links:
VSAO:0000067
Synonyms: "girdle-associated appendage" EXACT [UBERON:cjm]
"jointed paired lateral appendage" NARROW [UBERON:cjm]
"limb or fin" EXACT [UBERON:cjm]
"paired appendage" EXACT [VSAO:0000067]
"pectoral or pelvic appendage" EXACT [UBERON:cjm]
"pelvic/pectoral appendage" EXACT [UBERON:cjm]
Comments:this class is the union of the classes limb, pectoral fin and pelvic fin.
Alt_id: UBERON:0009872

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000026(appendage)
develops_from:UBERON:0004357(paired limb/fin bud)
part_of:UBERON:0010707(appendage girdle complex)



Children

is a:UBERON:0002101 (limb),UBERON:0004709 (pelvic appendage),UBERON:0004710 (pectoral appendage)
part of:UBERON:0004375 (bone of free limb or fin),UBERON:0010538 (paired limb/fin segment),UBERON:0011582 (paired limb/fin skeleton)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004708 (paired limb/fin), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_71a075807a91a482b21804c8ffd04abap@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_71a075807a91a482b21804c8ffd04abap@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_71a075807a91a482b21804c8ffd04abap@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_71a075807a91a482b21804c8ffd04abap@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_71a075807a91a482b21804c8ffd04abap@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_71a075807a91a482b21804c8ffd04abap@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_71a075807a91a482b21804c8ffd04abap@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_71a075807a91a482b21804c8ffd04abap@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_71a075807a91a482b21804c8ffd04abap@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_71a075807a91a482b21804c8ffd04abap@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_71a075807a91a482b21804c8ffd04abap@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_71a075807a91a482b21804c8ffd04abap@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_71a075807a91a482b21804c8ffd04abap@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_71a075807a91a482b21804c8ffd04abap@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_71a075807a91a482b21804c8ffd04abap@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_71a075807a91a482b21804c8ffd04abap@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_71a075807a91a482b21804c8ffd04abap@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_71a075807a91a482b21804c8ffd04abap@chr4:186423235..186423240, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_e3c8b45cc6747dabee7e5357a647ed96p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_e3c8b45cc6747dabee7e5357a647ed96p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_e3c8b45cc6747dabee7e5357a647ed96p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_e3c8b45cc6747dabee7e5357a647ed96p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_e3c8b45cc6747dabee7e5357a647ed96p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_e3c8b45cc6747dabee7e5357a647ed96p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_e3c8b45cc6747dabee7e5357a647ed96+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_e3c8b45cc6747dabee7e5357a647ed96p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_e3c8b45cc6747dabee7e5357a647ed96p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_e3c8b45cc6747dabee7e5357a647ed96p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_e3c8b45cc6747dabee7e5357a647ed96p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_e3c8b45cc6747dabee7e5357a647ed96p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_e3c8b45cc6747dabee7e5357a647ed96p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_e3c8b45cc6747dabee7e5357a647ed96p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_e3c8b45cc6747dabee7e5357a647ed96p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_e3c8b45cc6747dabee7e5357a647ed96p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_e3c8b45cc6747dabee7e5357a647ed96p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr8:144542829..144542857, -
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_74223db40b267e117de1f1fb2483c152-, p@chr2:152590465..152590472
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_74223db40b267e117de1f1fb2483c152p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_74223db40b267e117de1f1fb2483c152p38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_74223db40b267e117de1f1fb2483c152p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_74223db40b267e117de1f1fb2483c152p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_74223db40b267e117de1f1fb2483c152p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_74223db40b267e117de1f1fb2483c152p38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_74223db40b267e117de1f1fb2483c152p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_74223db40b267e117de1f1fb2483c152p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_74223db40b267e117de1f1fb2483c152p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_74223db40b267e117de1f1fb2483c152p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_74223db40b267e117de1f1fb2483c152p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_74223db40b267e117de1f1fb2483c152p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_74223db40b267e117de1f1fb2483c152p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_74223db40b267e117de1f1fb2483c152p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_74223db40b267e117de1f1fb2483c152p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_74223db40b267e117de1f1fb2483c152-, p@chr10:29918007..29918031
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_74223db40b267e117de1f1fb2483c152p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_74223db40b267e117de1f1fb2483c152p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_74223db40b267e117de1f1fb2483c152p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_74223db40b267e117de1f1fb2483c152p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_74223db40b267e117de1f1fb2483c152p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_74223db40b267e117de1f1fb2483c152p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_74223db40b267e117de1f1fb2483c152p73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_74223db40b267e117de1f1fb2483c152p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_74223db40b267e117de1f1fb2483c152p@chr6:125535391..125535409, +