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CL:0000955

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Name:pre-B-II cell
Namespace:FANTOM
Definition:"A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]
Xrefs:
links:
BTO:0001133
Synonyms: "pre-B-lymphocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000817(precursor B cell)
develops_from:CL:0000826(pro-B cell)



Children


is a:CL:0000954 (small pre-B-II cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000955 (pre-B-II cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_52b99d9e924181bfc3bad0e6f3b3557fp14@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_52b99d9e924181bfc3bad0e6f3b3557fp8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_52b99d9e924181bfc3bad0e6f3b3557fp8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_52b99d9e924181bfc3bad0e6f3b3557fp16@BCL7A
1.55e-98FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr22:23234780..23234786, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_52b99d9e924181bfc3bad0e6f3b3557fp6@SDHB
1.55e-98FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_52b99d9e924181bfc3bad0e6f3b3557fp6@SDHB
1.55e-98FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr11:26122006..26122011, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_52b99d9e924181bfc3bad0e6f3b3557fp5@T
1.55e-98FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_52b99d9e924181bfc3bad0e6f3b3557f-, p@chr15:66464730..66464736
1.55e-98FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chrX:89012355..89012363, +
1.55e-98FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_52b99d9e924181bfc3bad0e6f3b3557fp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_52b99d9e924181bfc3bad0e6f3b3557fp5@T
1.55e-98FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chrX:89012355..89012363, +
1.55e-98FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40991131..40991149, +
1.55e-98FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_52b99d9e924181bfc3bad0e6f3b3557fp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr7:86415255..86415288, +
1.55e-98FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_52b99d9e924181bfc3bad0e6f3b3557f-, p@chrX:42727038..42727047
1.55e-98FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_52b99d9e924181bfc3bad0e6f3b3557fp9@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_52b99d9e924181bfc3bad0e6f3b3557f-, p@chr11:26124040..26124064
1.55e-98FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr7:86415255..86415288, +
1.55e-98FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr8:128270027..128270033, -
1.55e-98FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr8:128270027..128270033, -
1.55e-98FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_52b99d9e924181bfc3bad0e6f3b3557fp14@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752389..20752420, -
1.55e-98FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_52b99d9e924181bfc3bad0e6f3b3557f+, p@chr12:40991131..40991149
1.55e-98FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_52b99d9e924181bfc3bad0e6f3b3557fp16@BCL7A
1.55e-98FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_52b99d9e924181bfc3bad0e6f3b3557fp9@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:8808206..8808209, -
1.55e-98FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581590..166581596, +