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UBERON:0010707

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Name:appendage girdle complex
Namespace:FANTOM
Definition:"An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:7182

VSAO:0000214
Synonyms: "appendage complex" EXACT [UBERON:cjm]
"appendage-girdle complex" EXACT [UBERON:cjm]
"girdle plus limb or fin" EXACT [UBERON:cjm]
"limb" RELATED INCONSISTENT [FMA:7182]
Comments:It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
Created by:haendel
Creation date:2012-04-23T10:46:51Z

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000475(organism subdivision),UBERON:0015212(lateral structure)



Children

is a:UBERON:0010708 (pectoral complex),UBERON:0010709 (pelvic complex)
part of:UBERON:0004708 (paired limb/fin),UBERON:0010740 (bone of appendage girdle complex)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010707 (appendage girdle complex), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbbp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbbp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbbp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbbp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbbp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbbp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbbp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbbp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbbp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbbp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbbp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbbp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbbp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbbp@chr22:25535147..25535150, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:114067922..114067931, -
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_48dad317ebcdb7464f57400779a939f1p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1+, p@chr22:26299595..26299605
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_48dad317ebcdb7464f57400779a939f1p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_48dad317ebcdb7464f57400779a939f1p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_48dad317ebcdb7464f57400779a939f1-, p@chr2:152590465..152590472
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_48dad317ebcdb7464f57400779a939f1p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_48dad317ebcdb7464f57400779a939f1p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_48dad317ebcdb7464f57400779a939f1p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_48dad317ebcdb7464f57400779a939f1p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_48dad317ebcdb7464f57400779a939f1p38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_48dad317ebcdb7464f57400779a939f1p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_48dad317ebcdb7464f57400779a939f1p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_48dad317ebcdb7464f57400779a939f1p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_48dad317ebcdb7464f57400779a939f1p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_48dad317ebcdb7464f57400779a939f1-, p@chr10:29918007..29918031
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_48dad317ebcdb7464f57400779a939f1p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_48dad317ebcdb7464f57400779a939f1p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_48dad317ebcdb7464f57400779a939f1p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_48dad317ebcdb7464f57400779a939f1p@chr12:102079632..102079647, -