FFCP PHASE1:Hg19::chr17:61919812..61919833,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6603|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11107|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc010dea.1_5end|description=CAGE_peak_6_at_SMARCD2_5end|id=chr17:61919812..61919833,-|ontology_enrichment_celltype=CL:0000055!3.23e-07!180;CL:0002251!6.89e-07!21|ontology_enrichment_celltype_v019=CL:0002623;3.94e-07;3!CL:0000622;7.60e-07;5|ontology_enrichment_celltype_v019_2=CL:0002623,2.50e-07,3;CL:0000622,5.54e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5093;8.75e-10;4!DOID:1612;8.75e-10;4|ontology_enrichment_disease_v019_2=DOID:5093,9.46e-10,4;DOID:1612,9.46e-10,4|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002365;2.25e-10;31!UBERON:0002330;2.25e-10;31!UBERON:0011135;2.58e-10;5!UBERON:0002216;2.58e-10;5!UBERON:0011134;2.58e-10;5!UBERON:0002209;2.58e-10;5!UBERON:0002213;2.58e-10;5!UBERON:0007844;2.58e-10;5!UBERON:0011138;2.58e-10;5!UBERON:0001130;2.58e-10;5!UBERON:0001066;2.58e-10;5!UBERON:0001468;2.58e-10;5!UBERON:0001044;2.68e-08;6!UBERON:0003293;2.68e-08;6!UBERON:0003294;2.68e-08;6!UBERON:0010047;2.68e-08;6!UBERON:0003408;2.68e-08;6!UBERON:0000167;2.68e-08;6|ontology_enrichment_uberon_v019_2=UBERON:0002365,2.00e-10,31;UBERON:0002330,2.00e-10,31;UBERON:0011135,2.06e-10,5;UBERON:0002216,2.06e-10,5;UBERON:0011134,2.06e-10,5;UBERON:0002209,2.06e-10,5;UBERON:0002213,2.06e-10,5;UBERON:0005856,2.06e-10,5;UBERON:0005866,2.06e-10,5;UBERON:0005863,2.06e-10,5;UBERON:0007844,2.06e-10,5;UBERON:0011138,2.06e-10,5;UBERON:0001130,2.06e-10,5;UBERON:0001066,2.06e-10,5;UBERON:0001468,2.06e-10,5;UBERON:0001044,1.45e-08,6;UBERON:0003293,1.45e-08,6;UBERON:0003294,1.45e-08,6;UBERON:0010047,1.45e-08,6;UBERON:0000167,1.45e-08,6|phase1_expression=0.726713517082227,0.642301571672949,0.563817616383885,0,2.23480547213644,0.872338524100369,2.53299878168311,1.89515962028049,0.783556884599516,0,0,0.655324116390517,1.58260186937072,2.97039247104112,2.65117900582333,0,0.602694528023977,1.46062018077475,0.487932798790507,0.369363174230364,0.408001382488506,0.626909442956176,0,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.309632246632152,0.919421224478927,0.30120591877825,0.369754010166788,0.92960640696362,0.995184627411951,0.293600439334847,0.553995408531877,0,0,0,0,0,0,0,0,0,0.411167888021826,0.619412741790207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0.786021525498329,0.411202997999018,0,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0.639312809217652,0,1.00267582127178,1.01392563272577,0.795285947051099,1.45990461090791,0.189069634328136,0.443458794925128,0.351339142772504,0.327447688744282,2.18577172975525,1.11235332835329,0.324547393654683,0.174129737299267,0.398873881556595,0,0,0,0,0,1.04142150482278,0.56530794192401,0.419499436209906,0.275118041940067,0,0.258416759169329,0.35576626268671,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0.625098097988558,0.673588117878509,0.450445921933289,0,0,0.366403487860815,0,0,2.18047026071267,0.496971951695318,0.379891534993739,0.662045904066094,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0.404132016209064,0.326923806226917,1.21085942115945,2.30470369792,1.87457145467037,1.5608003841516,0,1.19558944441441,0.822041490506354,0.485618833104395,0.702254033511242,0.408308342509787,0.491337269247072,1.13658359293342,0,0,1.82032272387605,3.59309070908119,0.673344455816265,0.250237039743928,0.554128230968366,0,0,0.150238058906597,0.567160915800105,0.538168907066586,0.213557388818567,0,1.20036438433761,0.618315175430633,1.03056216018252,0.37223371266318,0,0.487185025805993,0.757301322732344,0.276149695926898,1.13152239773168,0.355009592516614,0.10075209822764,0.67824236924195,0,0.545492241181669,0.286804595389004,0.609868530647977,0.927708378250397,0.580969714347592,0.621966330092223,0.756962552626885,0,0,0.643240938192885,0,2.78620756819187,3.60939740834793,0,0,0.241011029883482,0,0,0,0.134831308160164,0.196221465125346,0,0,1.40241773803446,0.8231480226628,2.94017422771084,2.53510069643662,0,1.18157981336281,0,0.983907508344908,0.171567810298526,0.548751427043128,0,0.603173834469785,1.66659201285353,1.3032332212413,0,0,0.115930404975077,0.587043471179108,0.144366447761074,0,0.190254152234598,7.11183958163348,6.86788929675898,0,0.234004265139238,0,0,0.503946384596579,0.283550194484773,0.985143749731331,1.45316969256981,1.15014803749563,0,0.088048434013226,0,0,0,0.190493682876507,0.381988425558278,0,0,0.102827492703324,0.600686115687835,0.571652865261156,0.224262168690721,0.43596006883328,0.1466765716419,0.258543431515556,7.15312891703765,0,0.2659381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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6603 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11107 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc010dea.1_5end | |||
|description=CAGE_peak_6_at_SMARCD2_5end | |||
|id=chr17:61919812..61919833,- | |||
|ontology_enrichment_celltype=CL:0000055!3.23e-07!180;CL:0002251!6.89e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002623;3.94e-07;3!CL:0000622;7.60e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,2.50e-07,3;CL:0000622,5.54e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;8.75e-10;4!DOID:1612;8.75e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,9.46e-10,4;DOID:1612,9.46e-10,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;2.25e-10;31!UBERON:0002330;2.25e-10;31!UBERON:0011135;2.58e-10;5!UBERON:0002216;2.58e-10;5!UBERON:0011134;2.58e-10;5!UBERON:0002209;2.58e-10;5!UBERON:0002213;2.58e-10;5!UBERON:0007844;2.58e-10;5!UBERON:0011138;2.58e-10;5!UBERON:0001130;2.58e-10;5!UBERON:0001066;2.58e-10;5!UBERON:0001468;2.58e-10;5!UBERON:0001044;2.68e-08;6!UBERON:0003293;2.68e-08;6!UBERON:0003294;2.68e-08;6!UBERON:0010047;2.68e-08;6!UBERON:0003408;2.68e-08;6!UBERON:0000167;2.68e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002365,2.00e-10,31;UBERON:0002330,2.00e-10,31;UBERON:0011135,2.06e-10,5;UBERON:0002216,2.06e-10,5;UBERON:0011134,2.06e-10,5;UBERON:0002209,2.06e-10,5;UBERON:0002213,2.06e-10,5;UBERON:0005856,2.06e-10,5;UBERON:0005866,2.06e-10,5;UBERON:0005863,2.06e-10,5;UBERON:0007844,2.06e-10,5;UBERON:0011138,2.06e-10,5;UBERON:0001130,2.06e-10,5;UBERON:0001066,2.06e-10,5;UBERON:0001468,2.06e-10,5;UBERON:0001044,1.45e-08,6;UBERON:0003293,1.45e-08,6;UBERON:0003294,1.45e-08,6;UBERON:0010047,1.45e-08,6;UBERON:0000167,1.45e-08,6 | |||
|phase1_expression=0.726713517082227,0.642301571672949,0.563817616383885,0,2.23480547213644,0.872338524100369,2.53299878168311,1.89515962028049,0.783556884599516,0,0,0.655324116390517,1.58260186937072,2.97039247104112,2.65117900582333,0,0.602694528023977,1.46062018077475,0.487932798790507,0.369363174230364,0.408001382488506,0.626909442956176,0,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.309632246632152,0.919421224478927,0.30120591877825,0.369754010166788,0.92960640696362,0.995184627411951,0.293600439334847,0.553995408531877,0,0,0,0,0,0,0,0,0,0.411167888021826,0.619412741790207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0.786021525498329,0.411202997999018,0,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0.639312809217652,0,1.00267582127178,1.01392563272577,0.795285947051099,1.45990461090791,0.189069634328136,0.443458794925128,0.351339142772504,0.327447688744282,2.18577172975525,1.11235332835329,0.324547393654683,0.174129737299267,0.398873881556595,0,0,0,0,0,1.04142150482278,0.56530794192401,0.419499436209906,0.275118041940067,0,0.258416759169329,0.35576626268671,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0.625098097988558,0.673588117878509,0.450445921933289,0,0,0.366403487860815,0,0,2.18047026071267,0.496971951695318,0.379891534993739,0.662045904066094,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0.404132016209064,0.326923806226917,1.21085942115945,2.30470369792,1.87457145467037,1.5608003841516,0,1.19558944441441,0.822041490506354,0.485618833104395,0.702254033511242,0.408308342509787,0.491337269247072,1.13658359293342,0,0,1.82032272387605,3.59309070908119,0.673344455816265,0.250237039743928,0.554128230968366,0,0,0.150238058906597,0.567160915800105,0.538168907066586,0.213557388818567,0,1.20036438433761,0.618315175430633,1.03056216018252,0.37223371266318,0,0.487185025805993,0.757301322732344,0.276149695926898,1.13152239773168,0.355009592516614,0.10075209822764,0.67824236924195,0,0.545492241181669,0.286804595389004,0.609868530647977,0.927708378250397,0.580969714347592,0.621966330092223,0.756962552626885,0,0,0.643240938192885,0,2.78620756819187,3.60939740834793,0,0,0.241011029883482,0,0,0,0.134831308160164,0.196221465125346,0,0,1.40241773803446,0.8231480226628,2.94017422771084,2.53510069643662,0,1.18157981336281,0,0.983907508344908,0.171567810298526,0.548751427043128,0,0.603173834469785,1.66659201285353,1.3032332212413,0,0,0.115930404975077,0.587043471179108,0.144366447761074,0,0.190254152234598,7.11183958163348,6.86788929675898,0,0.234004265139238,0,0,0.503946384596579,0.283550194484773,0.985143749731331,1.45316969256981,1.15014803749563,0,0.088048434013226,0,0,0,0.190493682876507,0.381988425558278,0,0,0.102827492703324,0.600686115687835,0.571652865261156,0.224262168690721,0.43596006883328,0.1466765716419,0.258543431515556,7.15312891703765,0,0.26593811658487,0,0.514414748524284,1.41849132023278,0.799266537048298,0.57191197463259,14.650783345569,1.64648067356154,0.65147236858747,1.06617584622764,0,0.602878754119172,0,0.299918973546171,0,0,0,0.239624855491583,0,0,0.723906533337896,0.205476322550383,0.358121926479791,0.560425719967636,0,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,1.8403723757871,4.00136416847742,1.08506009479894,0.415941723061614,0,0.157702415033935,0.234282829985426,0.300946099727719,0,0,1.32845119707087,0.184369168541703,0.173767228936166,1.76221041716467,1.02943027143257,0,0.215714200818617,0.213455115606889,0,0,3.32629322662648,0.496215615637554,0,0.841980283299221,0.384417447767103,0.511707249066704,1.12597744800525,2.96836132889982,0.308419387605311,0.355123450626254,0.410635780069046,1.03850885836724,0.348631135379878,0.846016147141356,0.601519410909855,0.184161977871793,0.229628896329213,0,0.655622074797121,1.35359883872224,0.0770153371044148,0,0,0.105551628892876,1.13733384070897,0,0.215915916102139,1.54227252690289,0.541892875087706,1.50506932156456,0.254876273045038,0.831076008928724,0.895499018888713,0,0,0,0,0,0.412164046590889,0.183138929636687,0.165018999841176,0,1.30012049207304,0,0.386682873168488,2.00263202249038,0.767518373630648,0.413509717453592,3.33002759091648,2.46528379654188,0.681813019328807,0.445160178233687,0,0.192190067365106,0.765676274967505,0,0.464845549297286,0.31481234683064,0.6970372701606,0.924100740528266,0,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0.190630193923825,1.79128453917934,1.71175595213568,0.636406495851874,0.78494864019923,0.899362287916574,0.54907405947211,0.706874414074119,0.202182481573316,0,0,0.48763373908959,0.243713489631284,0,0.818999468447914,0.989838023675989,0,1.10273068709225,0,0,4.6302042741335,1.31178950409327,0.202910376962704,0.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| |||
|short_description=p6@SMARCD2 | |||
}} |
Revision as of 15:01, 11 September 2013
Short description: | p6@SMARCD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SMARCD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc010dea.1_5end |
EntrezGene: | SMARCD2 |
HGNC: | 11107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 2.50e-07 | 3 |
acinar cell | 5.54e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
exocrine gland | 2.00e-10 | 31 |
exocrine system | 2.00e-10 | 31 |
intervertebral cartilage | 2.06e-10 | 5 |
symphysis | 2.06e-10 | 5 |
nonsynovial joint | 2.06e-10 | 5 |
fibrous joint | 2.06e-10 | 5 |
cartilaginous joint | 2.06e-10 | 5 |
developing mesenchymal condensation | 2.06e-10 | 5 |
pre-cartilage condensation | 2.06e-10 | 5 |
cartilaginous condensation | 2.06e-10 | 5 |
cartilage element | 2.06e-10 | 5 |
post-cranial axial skeletal system | 2.06e-10 | 5 |
vertebral column | 2.06e-10 | 5 |
intervertebral disk | 2.06e-10 | 5 |
intervertebral joint | 2.06e-10 | 5 |
saliva-secreting gland | 1.45e-08 | 6 |
gland of oral region | 1.45e-08 | 6 |
gland of foregut | 1.45e-08 | 6 |
oral gland | 1.45e-08 | 6 |
oral cavity | 1.45e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 9.46e-10 | 4 |
breast cancer | 9.46e-10 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.