FF:11797-124C6
From FANTOM5_SSTAR
| Name: | CD4+CD25+CD45RA- memory regulatory T cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13206 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| MicroRNAs: | Including candidate novel miRNAs(CAGE samples) Excluding candidate novel miRNAs(CAGE samples) |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sample
Co-expression clusters with enriched expression in this sample
Analyst:NA
link to dataset.
data
the median expression in the FANTOM5 collection is shown. Value is log10
transformed.
Analyst:NA
link to dataset.
data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs
sample. Pearson's correlation between the number of TFBSs estimated by
using the position-weight matrix for each promoter and its expression is
expressed as Z-score by taking the ones based on random position-weight
matrix, and the tail probability of the normal distribution corresponding
to the Z-score is taken as the resulting P-value. Lower P-value indicates
more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon
link to dataset.
data
library id: CNhs13206
169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon
link to dataset.
data
library id: CNhs13206
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.279 |
| 10 | 10 | 0.0112 |
| 100 | 100 | 0.684 |
| 101 | 101 | 0.203 |
| 102 | 102 | 0.746 |
| 103 | 103 | 0.328 |
| 104 | 104 | 0.813 |
| 105 | 105 | 0.286 |
| 106 | 106 | 0.344 |
| 107 | 107 | 0.0422 |
| 108 | 108 | 0.677 |
| 109 | 109 | 0.0818 |
| 11 | 11 | 0.0892 |
| 110 | 110 | 0.683 |
| 111 | 111 | 0.637 |
| 112 | 112 | 0.477 |
| 113 | 113 | 0.358 |
| 114 | 114 | 0.259 |
| 115 | 115 | 0.44 |
| 116 | 116 | 0.548 |
| 117 | 117 | 0.00275 |
| 118 | 118 | 0.284 |
| 119 | 119 | 0.713 |
| 12 | 12 | 0.842 |
| 120 | 120 | 0.588 |
| 121 | 121 | 0.822 |
| 122 | 122 | 0.706 |
| 123 | 123 | 0.0015 |
| 124 | 124 | 0.293 |
| 125 | 125 | 0.835 |
| 126 | 126 | 0.553 |
| 127 | 127 | 0.807 |
| 128 | 128 | 0.99 |
| 129 | 129 | 0.794 |
| 13 | 13 | 0.511 |
| 130 | 130 | 0.372 |
| 131 | 131 | 0.861 |
| 132 | 132 | 0.284 |
| 133 | 133 | 0.992 |
| 134 | 134 | 0.9 |
| 135 | 135 | 0.885 |
| 136 | 136 | 0.8 |
| 137 | 137 | 0.0594 |
| 138 | 138 | 0.313 |
| 139 | 139 | 0.0908 |
| 14 | 14 | 0.484 |
| 140 | 140 | 0.124 |
| 141 | 141 | 0.439 |
| 142 | 142 | 0.535 |
| 143 | 143 | 0.00171 |
| 144 | 144 | 0.927 |
| 145 | 145 | 0.605 |
| 146 | 146 | 0.413 |
| 147 | 147 | 0.0576 |
| 148 | 148 | 0.0485 |
| 149 | 149 | 0.69 |
| 15 | 15 | 0.107 |
| 150 | 150 | 0.637 |
| 151 | 151 | 0.596 |
| 152 | 152 | 0.555 |
| 153 | 153 | 0.751 |
| 154 | 154 | 0.477 |
| 155 | 155 | 0.00679 |
| 156 | 156 | 0.49 |
| 157 | 157 | 0.186 |
| 158 | 158 | 0.0437 |
| 159 | 159 | 0.17 |
| 16 | 16 | 0.836 |
| 160 | 160 | 0.697 |
| 161 | 161 | 0.896 |
| 162 | 162 | 0.0289 |
| 163 | 163 | 0.625 |
| 164 | 164 | 0.0533 |
| 165 | 165 | 0.586 |
| 166 | 166 | 0.461 |
| 167 | 167 | 0.161 |
| 168 | 168 | 0.752 |
| 169 | 169 | 0.852 |
| 17 | 17 | 0.938 |
| 18 | 18 | 0.806 |
| 19 | 19 | 0.228 |
| 2 | 2 | 0.639 |
| 20 | 20 | 0.456 |
| 21 | 21 | 0.672 |
| 22 | 22 | 0.584 |
| 23 | 23 | 0.552 |
| 24 | 24 | 0.765 |
| 25 | 25 | 0.056 |
| 26 | 26 | 0.312 |
| 27 | 27 | 0.42 |
| 28 | 28 | 0.582 |
| 29 | 29 | 0.00597 |
| 3 | 3 | 0.112 |
| 30 | 30 | 0.122 |
| 31 | 31 | 0.808 |
| 32 | 32 | 0.263 |
| 33 | 33 | 0.192 |
| 34 | 34 | 0.423 |
| 35 | 35 | 0.19 |
| 36 | 36 | 0.0273 |
| 37 | 37 | 0.18 |
| 38 | 38 | 0.918 |
| 39 | 39 | 0.41 |
| 4 | 4 | 0.94 |
| 40 | 40 | 0.534 |
| 41 | 41 | 0.175 |
| 42 | 42 | 0.116 |
| 43 | 43 | 0.333 |
| 44 | 44 | 0.505 |
| 45 | 45 | 0.354 |
| 46 | 46 | 0.26 |
| 47 | 47 | 0.0947 |
| 48 | 48 | 0.229 |
| 49 | 49 | 0.114 |
| 5 | 5 | 0.357 |
| 50 | 50 | 0.427 |
| 51 | 51 | 0.709 |
| 52 | 52 | 0.394 |
| 53 | 53 | 0.47 |
| 54 | 54 | 0.924 |
| 55 | 55 | 0.742 |
| 56 | 56 | 0.86 |
| 57 | 57 | 0.514 |
| 58 | 58 | 0.0934 |
| 59 | 59 | 0.892 |
| 6 | 6 | 0.987 |
| 60 | 60 | 0.398 |
| 61 | 61 | 0.0991 |
| 62 | 62 | 0.0823 |
| 63 | 63 | 0.899 |
| 64 | 64 | 0.406 |
| 65 | 65 | 0.953 |
| 66 | 66 | 0.792 |
| 67 | 67 | 0.775 |
| 68 | 68 | 0.642 |
| 69 | 69 | 0.643 |
| 7 | 7 | 0.214 |
| 70 | 70 | 0.0179 |
| 71 | 71 | 0.0469 |
| 72 | 72 | 0.0406 |
| 73 | 73 | 0.55 |
| 74 | 74 | 0.622 |
| 75 | 75 | 0.0188 |
| 76 | 76 | 0.154 |
| 77 | 77 | 0.105 |
| 78 | 78 | 0.171 |
| 79 | 79 | 0.685 |
| 8 | 8 | 0.967 |
| 80 | 80 | 0.0194 |
| 81 | 81 | 0.373 |
| 82 | 82 | 0.0923 |
| 83 | 83 | 0.541 |
| 84 | 84 | 0.462 |
| 85 | 85 | 0.897 |
| 86 | 86 | 0.103 |
| 87 | 87 | 0.825 |
| 88 | 88 | 0.938 |
| 89 | 89 | 0.139 |
| 9 | 9 | 0.931 |
| 90 | 90 | 0.0358 |
| 91 | 91 | 0.686 |
| 92 | 92 | 0.387 |
| 93 | 93 | 0.815 |
| 94 | 94 | 0.0998 |
| 95 | 95 | 0.0198 |
| 96 | 96 | 0.224 |
| 97 | 97 | 0.296 |
| 98 | 98 | 0.0844 |
| 99 | 99 | 4.02007e-4 |
Analyst:NA
library id: CNhs13206
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Analyst: Hideya Kawaji
link to source data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Analyst: Hideya Kawaji
link to source data
NA
