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MCL coexpression mm9:1032

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:61693956..61693980,-p1@Tspan15
Mm9::chr15:94459513..94459560,+p2@Tmem117
Mm9::chr4:49610297..49610365,-p1@2810432L12Rik
Mm9::chr5:115798721..115798747,-p3@Cox6a1
Mm9::chr7:87080144..87080257,-p1@2610034B18Rik
Mm9::chr9:56008805..56008852,-p1@Tspan3
Mm9::chr9:56008858..56008882,-p3@Tspan3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0016021integral to membrane0.0344393122232849
GO:0031224intrinsic to membrane0.0344393122232849
GO:0044425membrane part0.0344393122232849
GO:0004129cytochrome-c oxidase activity0.0344393122232849
GO:0016675oxidoreductase activity, acting on heme group of donors0.0344393122232849
GO:0016676oxidoreductase activity, acting on heme group of donors, oxygen as acceptor0.0344393122232849
GO:0015002heme-copper terminal oxidase activity0.0344393122232849



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine1.36e-1331
gastrointestinal system9.31e-1147
mucosa2.35e-1015
nervous system2.20e-0975
anatomical cluster4.15e-09244
intestinal mucosa4.89e-0913
anatomical wall4.89e-0913
wall of intestine4.89e-0913
gastrointestinal system mucosa4.89e-0913
central nervous system5.33e-0973
ectoderm-derived structure6.64e-0895
ectoderm6.64e-0895
presumptive ectoderm6.64e-0895
simple columnar epithelium3.71e-0711


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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