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UBERON:0000924

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Name:ectoderm
Namespace:FANTOM
Definition:"Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
Xrefs:
links:

AAO:0000137
BILA:0000036
BTO:0000315
EFO:0000414
EHDAA2:0000428
EMAPA:16069
EV:0100003
FBbt:00000111
FMA:69070
GAID:1304
[ Gray32.png Gray32.png]
MAT:0000155
MAT:0000173
MESH:A.16.254.425.273
MIAA:0000173
ncithesaurus:Ectoderm
SCTID:362851007
TAO:0000016
VHOG:0000153
XAO:0000001

ZFA:0000016
Synonyms: "embryonic ectoderm" EXACT [VHOG:0000153]
Alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000923(germ layer)
develops_from:UBERON:0006601(presumptive ectoderm)



Children

develops from:UBERON:0000007 (pituitary gland),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001016 (nervous system),UBERON:0002346 (neurectoderm),UBERON:0004121 (ectoderm-derived structure),UBERON:0004906 (ectodermal part of digestive tract),UBERON:0005497 (non-neural ectoderm),UBERON:0006268 (notochordal process),UBERON:0008425 (mammary ridge),UBERON:0010371 (ecto-epithelium),UBERON:0016879 (future central nervous system)
part of:UBERON:0000076 (external ectoderm),CL:0000221 (ectodermal cell),UBERON:0000930 (stomodeum),UBERON:0003051 (ear vesicle),UBERON:0005085 (ectodermal placode)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000924 (ectoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.23e-62FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_f778289b4536c5928b829e5882084fdep3@PAX6
3.23e-62FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_f778289b4536c5928b829e5882084fdep3@PAX6
6.65e-62FFCP PHASE2:Hg19::chr1:197237352..197237414,+#_26cd31ed02b4e2c0a3c2ff037717a2e7p2@CRB1
6.65e-62FFCP PHASE1:Hg19::chr1:197237352..197237414,+#_26cd31ed02b4e2c0a3c2ff037717a2e7p2@CRB1
1.04e-61FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_764d12557d3c4257d2f8771fa77dc02dp3@CTNND2
1.04e-61FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_764d12557d3c4257d2f8771fa77dc02dp3@CTNND2
1.02e-60FFCP PHASE1:Hg19::chr5:87980761..87980821,-#_0598a6cd10cc618b21ed00af5076bc36p4@LINC00461
1.02e-60FFCP PHASE2:Hg19::chr5:87980761..87980821,-#_0598a6cd10cc618b21ed00af5076bc36p4@LINC00461
6.2e-60FFCP PHASE2:Hg19::chr6:123100738..123100763,+#_18c325b9fb152f9303c89148e96067aep2@FABP7
6.2e-60FFCP PHASE1:Hg19::chr6:123100738..123100763,+#_18c325b9fb152f9303c89148e96067aep2@FABP7
1.12e-59FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_49d9d4b83ac570bcbc32a830dec0943cp6@BSCL2
1.12e-59FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_49d9d4b83ac570bcbc32a830dec0943cp6@BSCL2
1.34e-59FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_217780d8e2fcb45dbe3da62aa82d1d98p2@MARCH1
1.34e-59FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_217780d8e2fcb45dbe3da62aa82d1d98p2@MARCH1
1.88e-59FFCP PHASE1:Hg19::chr18:59000657..59000672,+#_c8d17ed5b499d86e5b6977c6ff0d3d3cp1@CDH20
1.88e-59FFCP PHASE2:Hg19::chr18:59000657..59000672,+#_c8d17ed5b499d86e5b6977c6ff0d3d3cp1@CDH20
8.39e-59FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_d444292c781300fed6b168e7fc21bebbp6@GPM6B
8.39e-59FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_d444292c781300fed6b168e7fc21bebbp6@GPM6B
9.87e-59FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_0734d0b132b4340ceb4c6501f41d9085p1@ANKFN1
9.87e-59FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_0734d0b132b4340ceb4c6501f41d9085p1@ANKFN1
2.74e-58FFCP PHASE2:Hg19::chr8:132053136..132053177,-#_a04db8f83d32bff63bfcf0800e5f5597p2@ADCY8
2.74e-58FFCP PHASE1:Hg19::chr8:132053136..132053177,-#_a04db8f83d32bff63bfcf0800e5f5597p2@ADCY8
3.3e-58FFCP PHASE1:Hg19::chr11:62474885..62474903,-#_1985e3e4d650a84c58c8ef40096a87e5p5@BSCL2
3.3e-58FFCP PHASE2:Hg19::chr11:62474885..62474903,-#_1985e3e4d650a84c58c8ef40096a87e5p5@BSCL2
3.49e-58FFCP PHASE2:Hg19::chr9:19789028..19789050,-#_e04d9c9796075c605c9abc7233b9951dp1@SLC24A2
3.49e-58FFCP PHASE1:Hg19::chr9:19789028..19789050,-#_e04d9c9796075c605c9abc7233b9951dp1@SLC24A2
1.03e-57FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_5fd540fe6032c7fcaadc870af27acf05p9@MAP2
1.03e-57FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_5fd540fe6032c7fcaadc870af27acf05p9@MAP2
2.3e-57FFCP PHASE1:Hg19::chr8:30496078..30496130,+#_b784018b4420c2197332e479e604688bp1@LOC100507341
2.3e-57FFCP PHASE2:Hg19::chr8:30496078..30496130,+#_b784018b4420c2197332e479e604688bp1@LOC100507341
2.58e-57FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_a49fe7110ac9fab215bcb82009f7bbc6p1@ANK3
2.58e-57FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_a49fe7110ac9fab215bcb82009f7bbc6p1@ANK3
2.86e-57FFCP PHASE1:Hg19::chr11:105481612..105481624,+#_463c52571d9858ff5208714265925c93p2@GRIA4
2.86e-57FFCP PHASE2:Hg19::chr11:105481612..105481624,+#_463c52571d9858ff5208714265925c93p2@GRIA4
3.09e-57FFCP PHASE2:Hg19::chr8:9953136..9953190,+#_e8e0dca20eeb48bd1c37aa2819ad5f9cp3@MSRA
3.09e-57FFCP PHASE1:Hg19::chr8:9953136..9953190,+#_e8e0dca20eeb48bd1c37aa2819ad5f9cp3@MSRA
7.06e-57FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_8c4d70f2fa3af1a17388afb41091c426p2@RFX4
7.06e-57FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_8c4d70f2fa3af1a17388afb41091c426p2@RFX4
9.33e-57FFCP PHASE1:Hg19::chr2:210526166..210526232,+#_31733ff11698f521afba84d68360af2cp5@MAP2
9.33e-57FFCP PHASE2:Hg19::chr2:210526166..210526232,+#_31733ff11698f521afba84d68360af2cp5@MAP2
9.72e-57FFCP PHASE1:Hg19::chr5:11904580..11904619,-#_49ef64823f65a5df839dab5077700e85p6@CTNND2
9.72e-57FFCP PHASE2:Hg19::chr5:11904580..11904619,-#_49ef64823f65a5df839dab5077700e85p6@CTNND2
1.1e-56FFCP PHASE2:Hg19::chr17:43972989..43973035,-#_7b499421de724250fcc6ccc0ff9c3b4ep1@LOC100128977
1.1e-56FFCP PHASE1:Hg19::chr17:43972989..43973035,-#_7b499421de724250fcc6ccc0ff9c3b4ep1@LOC100128977
1.39e-56FFCP PHASE1:Hg19::chr19:46932128..46932207,-#_b2df93e212d5c7bf0cd951eb6485e04cp@chr19:46932128..46932207, -
1.39e-56FFCP PHASE1:Hg19::chr5:87437585..87437647,+#_b2df93e212d5c7bf0cd951eb6485e04cp@chr5:87437585..87437647, +
1.39e-56FFCP PHASE2:Hg19::chr19:46932128..46932207,-#_b2df93e212d5c7bf0cd951eb6485e04cp@chr19:46932128..46932207, -
1.39e-56FFCP PHASE2:Hg19::chr5:87437585..87437647,+#_b2df93e212d5c7bf0cd951eb6485e04cp@chr5:87437585..87437647, +
1.4e-56FFCP PHASE1:Hg19::chr11:105481405..105481472,+#_59d0c583410649767a084600554ab151p1@GRIA4
1.4e-56FFCP PHASE2:Hg19::chr11:105481405..105481472,+#_59d0c583410649767a084600554ab151p1@GRIA4
1.65e-56FFCP PHASE2:Hg19::chr4:176733558..176733609,-#_1319e3f787eef45e806c8939c7def70fp7@GPM6A
1.65e-56FFCP PHASE1:Hg19::chr4:176733558..176733609,-#_1319e3f787eef45e806c8939c7def70fp7@GPM6A
2.03e-56FFCP PHASE2:Hg19::chr1:205012293..205012326,+#_4eea5ec8ac4472d3e80b7799b66d2d12p2@CNTN2
2.03e-56FFCP PHASE1:Hg19::chr1:205012293..205012326,+#_4eea5ec8ac4472d3e80b7799b66d2d12p2@CNTN2
5.74e-56FFCP PHASE1:Hg19::chr4:176733377..176733424,-#_081d0c03fb7b11720264a7aee33a7a96p1@GPM6A
5.74e-56FFCP PHASE2:Hg19::chr4:176733377..176733424,-#_081d0c03fb7b11720264a7aee33a7a96p1@GPM6A
7.08e-56FFCP PHASE2:Hg19::chr12:20848486..20848542,+#_232d5aa083364b351e45b02373b527c8p1@SLCO1C1
7.08e-56FFCP PHASE1:Hg19::chr12:20848486..20848542,+#_232d5aa083364b351e45b02373b527c8p1@SLCO1C1
7.16e-56FFCP PHASE1:Hg19::chr9:19789059..19789070,-#_3802fbe384a9cb8495d1bc02d84a7028p2@SLC24A2
7.16e-56FFCP PHASE2:Hg19::chr9:19789059..19789070,-#_3802fbe384a9cb8495d1bc02d84a7028p2@SLC24A2
7.49e-56FFCP PHASE2:Hg19::chr11:105480793..105480845,+#_c069a068c876328bc0d67e425c0c9b9ap3@GRIA4
7.49e-56FFCP PHASE1:Hg19::chr11:105480793..105480845,+#_c069a068c876328bc0d67e425c0c9b9ap3@GRIA4
1.31e-55FFCP PHASE1:Hg19::chr3:181417353..181417371,+#_0c07ee956a5f8d728c264efde1432cd7p1@SOX2-OT
1.31e-55FFCP PHASE2:Hg19::chr3:181417353..181417371,+#_0c07ee956a5f8d728c264efde1432cd7p1@SOX2-OT
1.32e-55FFCP PHASE2:Hg19::chr4:176733425..176733439,-#_97dd4d356f6ef436528f61f475425534p8@GPM6A
1.32e-55FFCP PHASE1:Hg19::chr4:176733425..176733439,-#_97dd4d356f6ef436528f61f475425534p8@GPM6A
1.35e-55FFCP PHASE1:Hg19::chr8:9953735..9953778,+#_95277c9f715a017426118207ca88707ep@chr8:9953735..9953778, +
1.35e-55FFCP PHASE2:Hg19::chr8:9953735..9953778,+#_95277c9f715a017426118207ca88707ep@chr8:9953735..9953778, +
1.39e-55FFCP PHASE2:Hg19::chr3:47933982..47934047,-#_cc4c82ed63f0fafcbc2c3d813a7b1328p3@MAP4
1.39e-55FFCP PHASE1:Hg19::chr3:47933982..47934047,-#_cc4c82ed63f0fafcbc2c3d813a7b1328p3@MAP4
1.59e-55FFCP PHASE2:Hg19::chr3:181417374..181417407,+#_b088dd3f5a517d0b6df4b4e8850fe504p2@SOX2-OT
1.59e-55FFCP PHASE1:Hg19::chr3:181417374..181417407,+#_b088dd3f5a517d0b6df4b4e8850fe504p2@SOX2-OT
1.87e-55FFCP PHASE1:Hg19::chr21:42219168..42219187,-#_8f2e7c15d5c9734f8c88b2290dd58f2fp2@DSCAM
1.87e-55FFCP PHASE2:Hg19::chr21:42219168..42219187,-#_8f2e7c15d5c9734f8c88b2290dd58f2fp2@DSCAM
2.95e-55FFCP PHASE1:Hg19::chr12:99288536..99288653,-#_d3e07414a773c3764c8b3e47810a94f4p1@ANKS1B
2.95e-55FFCP PHASE2:Hg19::chr12:99288536..99288653,-#_d3e07414a773c3764c8b3e47810a94f4p1@ANKS1B
4.14e-55FFCP PHASE1:Hg19::chr17:49124154..49124169,-#_b5cc13d28daa446206e4176e9612209ep6@SPAG9
4.14e-55FFCP PHASE2:Hg19::chr17:49124154..49124169,-#_b5cc13d28daa446206e4176e9612209ep6@SPAG9
7.57e-55FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_eec71f45942e687eb7ad392d47a70301p1@RFX4
7.57e-55FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_eec71f45942e687eb7ad392d47a70301p1@RFX4
7.83e-55FFCP PHASE1:Hg19::chr17:42984601..42984636,-#_62a130c19a3388310c14bfebdcb9ee4fp2@GFAP
7.83e-55FFCP PHASE2:Hg19::chr17:42984601..42984636,-#_62a130c19a3388310c14bfebdcb9ee4fp2@GFAP
8.99e-55FFCP PHASE1:Hg19::chr2:210444402..210444423,+#_7a55c084138f15d812e1167015855892p11@MAP2
8.99e-55FFCP PHASE2:Hg19::chr2:210444402..210444423,+#_7a55c084138f15d812e1167015855892p11@MAP2
9.16e-55FFCP PHASE2:Hg19::chrX:151619746..151619815,-#_9390041111cd7d0955c30a3700219222p1@GABRA3
9.16e-55FFCP PHASE1:Hg19::chrX:151619746..151619815,-#_9390041111cd7d0955c30a3700219222p1@GABRA3
1.03e-54FFCP PHASE2:Hg19::chr14:60097524..60097538,-#_95255bc6e46583e4661de583a5f530c3p3@RTN1
1.03e-54FFCP PHASE1:Hg19::chr14:60097524..60097538,-#_95255bc6e46583e4661de583a5f530c3p3@RTN1
1.14e-54FFCP PHASE1:Hg19::chr2:210444267..210444287,+#_2954891cf75601d494c304851433c041p7@MAP2
1.14e-54FFCP PHASE2:Hg19::chr2:210444267..210444287,+#_2954891cf75601d494c304851433c041p7@MAP2
1.16e-54FFCP PHASE1:Hg19::chr17:43972010..43972027,+#_7ec461f86792e9a77088e6298c221fd3p4@MAPT
1.16e-54FFCP PHASE2:Hg19::chr17:43972010..43972027,+#_7ec461f86792e9a77088e6298c221fd3p4@MAPT
1.28e-54FFCP PHASE1:Hg19::chr19:10563567..10563617,+#_7c7acb8d2775da465c46140d1210f80fp1@PDE4A
1.28e-54FFCP PHASE1:Hg19::chr2:210444345..210444394,+#_7c7acb8d2775da465c46140d1210f80fp3@MAP2
1.28e-54FFCP PHASE2:Hg19::chr2:210444345..210444394,+#_7c7acb8d2775da465c46140d1210f80fp3@MAP2
1.28e-54FFCP PHASE2:Hg19::chr19:10563567..10563617,+#_7c7acb8d2775da465c46140d1210f80fp1@PDE4A
2.04e-54FFCP PHASE2:Hg19::chrX:13835124..13835142,-#_5cb214f785e616a8c1ceecfa4147d548p5@GPM6B
2.04e-54FFCP PHASE1:Hg19::chrX:13835124..13835142,-#_5cb214f785e616a8c1ceecfa4147d548p5@GPM6B
2.23e-54FFCP PHASE2:Hg19::chr1:177134024..177134052,-#_d69fd7a2587a582981e6876458d57ab2p2@ASTN1
2.23e-54FFCP PHASE1:Hg19::chr1:177134024..177134052,-#_d69fd7a2587a582981e6876458d57ab2p2@ASTN1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.