MCL coexpression mm9:1061
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr11:118337140..118337150,+ | p@chr11:118337140..118337150 + |
| Mm9::chr13:63252868..63252890,+ | p@chr13:63252868..63252890 + |
| Mm9::chr16:4549406..4549436,- | p@chr16:4549406..4549436 - |
| Mm9::chr1:166467691..166467700,- | p@chr1:166467691..166467700 - |
| Mm9::chr3:101471524..101471547,+ | p@chr3:101471524..101471547 + |
| Mm9::chr3:107714196..107714218,- | p@chr3:107714196..107714218 - |
| Mm9::chr5:73729793..73729815,- | p2@Ociad2 |
Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont
link to source dataset
data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0016284 | alanine aminopeptidase activity | 0.0200421603531313 |
| GO:0004179 | membrane alanyl aminopeptidase activity | 0.0200421603531313 |
| GO:0043450 | alkene biosynthetic process | 0.0200421603531313 |
| GO:0019370 | leukotriene biosynthetic process | 0.0200421603531313 |
| GO:0006691 | leukotriene metabolic process | 0.0200421603531313 |
| GO:0043449 | alkene metabolic process | 0.0200421603531313 |
| GO:0046456 | icosanoid biosynthetic process | 0.0229015595172475 |
| GO:0006690 | icosanoid metabolic process | 0.0250444610025648 |
| GO:0004177 | aminopeptidase activity | 0.0274508806678439 |
| GO:0008235 | metalloexopeptidase activity | 0.0367067000739442 |
| GO:0006633 | fatty acid biosynthetic process | 0.0374582636576044 |
| GO:0046394 | carboxylic acid biosynthetic process | 0.0374582636576044 |
| GO:0016053 | organic acid biosynthetic process | 0.0374582636576044 |
| GO:0008238 | exopeptidase activity | 0.0447628310266275 |
Relative expression of the co-expression cluster over median
Analyst:
Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji
links to source dataset
cell_data
uberon_data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 1.65e-11 | 9 |
| epithelial cell of alimentary canal | 1.65e-11 | 9 |
| intestinal crypt stem cell | 6.78e-07 | 3 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 3.42e-40 | 31 |
| gastrointestinal system | 8.40e-32 | 47 |
| mucosa | 1.94e-20 | 15 |
| intestinal mucosa | 1.59e-17 | 13 |
| anatomical wall | 1.59e-17 | 13 |
| wall of intestine | 1.59e-17 | 13 |
| gastrointestinal system mucosa | 1.59e-17 | 13 |
| epithelium of mucosa | 1.65e-11 | 9 |
| gastrointestinal system epithelium | 1.65e-11 | 9 |
| intestinal epithelium | 1.65e-11 | 9 |
| organ component layer | 2.45e-11 | 24 |
| digestive system | 3.09e-09 | 116 |
| digestive tract | 3.09e-09 | 116 |
| primitive gut | 3.09e-09 | 116 |
| simple columnar epithelium | 4.14e-09 | 11 |
| endoderm-derived structure | 6.26e-09 | 118 |
| endoderm | 6.26e-09 | 118 |
| presumptive endoderm | 6.26e-09 | 118 |
| small intestine | 5.98e-08 | 4 |
| subdivision of digestive tract | 6.27e-08 | 114 |
TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon
link to source data
Novel motifs
data
Jaspar motifs
data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.0286946 |
| MA0004.1 | 0.481116 |
| MA0006.1 | 0.311391 |
| MA0007.1 | 0.465969 |
| MA0009.1 | 0.92425 |
| MA0014.1 | 0.425579 |
| MA0017.1 | 0.337808 |
| MA0019.1 | 0.740036 |
| MA0024.1 | 0.880057 |
| MA0025.1 | 1.15921 |
| MA0027.1 | 2.57545 |
| MA0028.1 | 0.321735 |
| MA0029.1 | 0.858105 |
| MA0030.1 | 0.864739 |
| MA0031.1 | 0.828781 |
| MA0038.1 | 0.62758 |
| MA0040.1 | 0.936879 |
| MA0041.1 | 0.404721 |
| MA0042.1 | 0.391504 |
| MA0043.1 | 1.02178 |
| MA0046.1 | 0.960497 |
| MA0048.1 | 0.801219 |
| MA0050.1 | 0.520357 |
| MA0051.1 | 0.636645 |
| MA0052.1 | 0.945011 |
| MA0055.1 | 4.34044 |
| MA0056.1 | 0 |
| MA0057.1 | 0.117936 |
| MA0058.1 | 0.384683 |
| MA0059.1 | 0.397033 |
| MA0060.1 | 0.232592 |
| MA0061.1 | 0.261749 |
| MA0063.1 | 0 |
| MA0066.1 | 0.616444 |
| MA0067.1 | 1.27078 |
| MA0068.1 | 0.121435 |
| MA0069.1 | 0.945354 |
| MA0070.1 | 0.93557 |
| MA0071.1 | 0.519509 |
| MA0072.1 | 0.927016 |
| MA0073.1 | 7.84204 |
| MA0074.1 | 1.41926 |
| MA0076.1 | 0.356883 |
| MA0077.1 | 0.905143 |
| MA0078.1 | 0.670113 |
| MA0081.1 | 0.420276 |
| MA0083.1 | 1.02098 |
| MA0084.1 | 1.59945 |
| MA0087.1 | 0.977537 |
| MA0088.1 | 0.598004 |
| MA0089.1 | 0 |
| MA0090.1 | 0.446539 |
| MA0091.1 | 0.494398 |
| MA0092.1 | 1.13539 |
| MA0093.1 | 0.329976 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.568369 |
| MA0101.1 | 0.406019 |
| MA0103.1 | 1.64639 |
| MA0105.1 | 0.162418 |
| MA0106.1 | 0.677988 |
| MA0107.1 | 0.342432 |
| MA0108.2 | 0.763162 |
| MA0109.1 | 0 |
| MA0111.1 | 0.460823 |
| MA0113.1 | 0.649407 |
| MA0114.1 | 0.259463 |
| MA0115.1 | 1.0246 |
| MA0116.1 | 0.311187 |
| MA0117.1 | 0.992087 |
| MA0119.1 | 0.40661 |
| MA0122.1 | 1.01209 |
| MA0124.1 | 1.21735 |
| MA0125.1 | 1.14291 |
| MA0130.1 | 0 |
| MA0131.1 | 0.735438 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.05845 |
| MA0136.1 | 0.600242 |
| MA0139.1 | 1.10833 |
| MA0140.1 | 0.568252 |
| MA0141.1 | 0.964041 |
| MA0142.1 | 0.814115 |
| MA0143.1 | 0.665982 |
| MA0144.1 | 0.262477 |
| MA0145.1 | 0.631666 |
| MA0146.1 | 0.108739 |
| MA0147.1 | 0.274511 |
| MA0148.1 | 0.49752 |
| MA0149.1 | 1.05888 |
| MA0062.2 | 0.167299 |
| MA0035.2 | 0.573016 |
| MA0039.2 | 1.72008 |
| MA0138.2 | 0.727395 |
| MA0002.2 | 0.592533 |
| MA0137.2 | 0.957645 |
| MA0104.2 | 0.218974 |
| MA0047.2 | 0.626803 |
| MA0112.2 | 1.05549 |
| MA0065.2 | 0.0914071 |
| MA0150.1 | 1.17631 |
| MA0151.1 | 0 |
| MA0152.1 | 0.626912 |
| MA0153.1 | 1.07519 |
| MA0154.1 | 0.397336 |
| MA0155.1 | 0.102995 |
| MA0156.1 | 0.356017 |
| MA0157.1 | 0.781683 |
| MA0158.1 | 0 |
| MA0159.1 | 0.776527 |
| MA0160.1 | 1.25065 |
| MA0161.1 | 0 |
| MA0162.1 | 0.878466 |
| MA0163.1 | 0.82914 |
| MA0164.1 | 0.600609 |
| MA0080.2 | 0.343316 |
| MA0018.2 | 0.610433 |
| MA0099.2 | 0.721008 |
| MA0079.2 | 0.86982 |
| MA0102.2 | 1.65195 |
| MA0258.1 | 0.688848 |
| MA0259.1 | 0.26402 |
| MA0442.1 | 0 |
