Personal tools

MCL coexpression mm9:136

From FANTOM5_SSTAR

Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:61990161..61990183,-p2@Srgn
Mm9::chr11:61298940..61298954,+p1@Mfap4
Mm9::chr11:61299205..61299243,+p@chr11:61299205..61299243
+
Mm9::chr11:61299249..61299278,+p@chr11:61299249..61299278
+
Mm9::chr11:61299527..61299541,+p@chr11:61299527..61299541
+
Mm9::chr11:61299609..61299632,+p@chr11:61299609..61299632
+
Mm9::chr11:61300573..61300615,+p@chr11:61300573..61300615
+
Mm9::chr11:61301246..61301258,+p@chr11:61301246..61301258
+
Mm9::chr11:61301398..61301411,+p@chr11:61301398..61301411
+
Mm9::chr11:61301454..61301465,+p@chr11:61301454..61301465
+
Mm9::chr11:61301499..61301513,+p@chr11:61301499..61301513
+
Mm9::chr11:61301518..61301533,+p@chr11:61301518..61301533
+
Mm9::chr11:61301545..61301573,+p@chr11:61301545..61301573
+
Mm9::chr11:61301617..61301632,-p@chr11:61301617..61301632
-
Mm9::chr11:61301648..61301666,+p@chr11:61301648..61301666
+
Mm9::chr11:61301720..61301779,-p@chr11:61301720..61301779
-
Mm9::chr11:61301788..61301807,+p@chr11:61301788..61301807
+
Mm9::chr11:61301793..61301819,-p@chr11:61301793..61301819
-
Mm9::chr11:61301839..61301851,+p@chr11:61301839..61301851
+
Mm9::chr11:61301887..61301922,+p@chr11:61301887..61301922
+
Mm9::chr11:61301950..61301962,+p@chr11:61301950..61301962
+
Mm9::chr11:61301984..61302017,+p@chr11:61301984..61302017
+
Mm9::chr11:61302171..61302175,+p@chr11:61302171..61302175
+
Mm9::chr11:85589157..85589190,-p1@ENSMUST00000134305
Mm9::chr11:85699562..85699575,+p6@Tbx4
Mm9::chr11:85699862..85699920,+p1@Tbx4
Mm9::chr11:85703335..85703350,+p4@Tbx4
Mm9::chr11:85703483..85703508,+p2@Tbx4
Mm9::chr11:96194131..96194154,+p@chr11:96194131..96194154
+
Mm9::chr12:36212286..36212292,-p@chr12:36212286..36212292
-
Mm9::chr12:85467191..85467196,+p@chr12:85467191..85467196
+
Mm9::chr13:63499560..63499569,-p12@Fancc
Mm9::chr13:63499589..63499607,-p3@Fancc
Mm9::chr13:95993406..95993421,-p5@Pde8b
Mm9::chr14:120879424..120879430,+p@chr14:120879424..120879430
+
Mm9::chr14:120880079..120880082,+p@chr14:120880079..120880082
+
Mm9::chr14:28870576..28870579,+p@chr14:28870576..28870579
+
Mm9::chr14:84844821..84844839,+p@chr14:84844821..84844839
+
Mm9::chr16:29998327..29998355,-p@chr16:29998327..29998355
-
Mm9::chr16:48842721..48842744,+p@chr16:48842721..48842744
+
Mm9::chr17:33661115..33661176,+p1@Adamts10
Mm9::chr19:16037012..16037024,-p@chr19:16037012..16037024
-
Mm9::chr19:5741300..5741325,+p@chr19:5741300..5741325
+
Mm9::chr1:10983388..10983412,+p3@Prex2
Mm9::chr1:10983446..10983456,+p7@Prex2
Mm9::chr1:166726854..166726865,+p4@Dpt
Mm9::chr1:166726866..166726877,+p@chr1:166726866..166726877
+
Mm9::chr1:44275750..44275796,-p1@4832428D23Rik
Mm9::chr1:44275797..44275806,-p2@4832428D23Rik
Mm9::chr1:80210506..80210524,-p2@Fam124b
Mm9::chr2:126950686..126950702,-p@chr2:126950686..126950702
-
Mm9::chr2:17653200..17653216,-p11@Nebl
Mm9::chr2:17653387..17653392,-p9@Nebl
Mm9::chr2:66512907..66512912,-p@chr2:66512907..66512912
-
Mm9::chr2:66520757..66520762,-p@chr2:66520757..66520762
-
Mm9::chr2:66524237..66524246,-p@chr2:66524237..66524246
-
Mm9::chr2:66568248..66568250,-p@chr2:66568248..66568250
-
Mm9::chr2:66622960..66622977,-p1@Scn7a
Mm9::chr2:66623294..66623305,-p5@Scn7a
Mm9::chr2:7004606..7004622,-p@chr2:7004606..7004622
-
Mm9::chr3:122432788..122432812,+p13@Pde5a
Mm9::chr3:122432836..122432847,+p16@Pde5a
Mm9::chr3:122559344..122559358,+p@chr3:122559344..122559358
+
Mm9::chr4:123289346..123289350,-p@chr4:123289346..123289350
-
Mm9::chr4:123290944..123290994,-p@chr4:123290944..123290994
-
Mm9::chr4:123290999..123291011,-p@chr4:123290999..123291011
-
Mm9::chr4:123291018..123291042,-p@chr4:123291018..123291042
-
Mm9::chr4:123291044..123291056,-p@chr4:123291044..123291056
-
Mm9::chr4:123291064..123291076,-p@chr4:123291064..123291076
-
Mm9::chr5:67289716..67289733,+p5@Limch1
Mm9::chr6:65621597..65621612,+p1@A930038C07Rik
Mm9::chr6:65621750..65621764,+p2@A930038C07Rik
Mm9::chr7:118006761..118006767,-p3@Lyve1
Mm9::chr8:123607066..123607091,-p2@1110050K14Rik
Mm9::chr8:80194824..80194828,-p@chr8:80194824..80194828
-
Mm9::chr8:94878479..94878503,-p@chr8:94878479..94878503
-
Mm9::chr9:110959404..110959419,-p9@Ccrl2
Mm9::chr9:8544199..8544225,+p1@Trpc6
Mm9::chr9:8544227..8544258,+p2@Trpc6
Mm9::chrX:103241190..103241203,+p@chrX:103241190..103241203
+
Mm9::chrX:132585746..132585757,-p@chrX:132585746..132585757
-
Mm9::chrX:137198835..137198865,+p3@Mid2
Mm9::chrX:53984956..53984975,+p1@Fhl1
Mm9::chrX:53987988..53987994,+p@chrX:53987988..53987994
+
Mm9::chrX:7848806..7848916,+p2@Slc38a5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:136&oldid=3072135"