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MCL coexpression mm9:64

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Phase1 CAGE Peaks

  Short description
Mm9::chr10:112368477..112368482,+ p1@ENSMUST00000082773
Mm9::chr10:127522566..127522584,+ p7@Atp5b
Mm9::chr10:34108616..34108620,- p@chr10:34108616..34108620
-
Mm9::chr10:39978269..39978276,+ p1@ENSMUST00000083936
Mm9::chr10:40003825..40003830,+ p@chr10:40003825..40003830
+
Mm9::chr10:49972787..49972789,+ p@chr10:49972787..49972789
+
Mm9::chr10:68682105..68682130,+ p17@Rhobtb1
Mm9::chr10:77856043..77856053,+ p2@Gm10146
p2@LOC100505147
p2@Lsm7
Mm9::chr10:82418093..82418118,- p@chr10:82418093..82418118
-
Mm9::chr10:87801413..87801426,- p@chr10:87801413..87801426
-
Mm9::chr11:100184357..100184363,- p@chr11:100184357..100184363
-
Mm9::chr11:102331153..102331180,- p2@Itga2b
Mm9::chr11:115158932..115158945,- p3@Fads6
Mm9::chr11:11601645..11601647,+ p@chr11:11601645..11601647
+
Mm9::chr11:120440514..120440527,- p@chr11:120440514..120440527
-
Mm9::chr11:120624106..120624107,+ p13@Hmga1-rs1
p14@Hmga1
Mm9::chr11:40498465..40498469,- p6@Mat2b
Mm9::chr11:4537722..4537729,+ p2@Ascc2
Mm9::chr11:51420508..51420543,+ p@chr11:51420508..51420543
+
Mm9::chr11:59661738..59661759,- p@chr11:59661738..59661759
-
Mm9::chr11:6073067..6073069,- p1@ENSMUST00000117476
Mm9::chr11:69482493..69482498,- p1@ENSMUST00000158917
Mm9::chr11:69810746..69810760,- p@chr11:69810746..69810760
-
Mm9::chr11:70453721..70453748,+ p@chr11:70453721..70453748
+
Mm9::chr11:72695293..72695294,+ p1@ENSMUST00000083364
Mm9::chr12:104098510..104098512,- p@chr12:104098510..104098512
-
Mm9::chr12:44561152..44561157,+ p@chr12:44561152..44561157
+
Mm9::chr12:50942809..50942811,- p@chr12:50942809..50942811
-
Mm9::chr12:68053211..68053223,+ +
p@chr12:68053211..68053223
Mm9::chr13:106689021..106689037,+ p@chr13:106689021..106689037
+
Mm9::chr13:21272819..21272822,+ p@chr13:21272819..21272822
+
Mm9::chr13:61029443..61029449,+ p1@ENSMUST00000122502
Mm9::chr14:110639136..110639141,+ p@chr14:110639136..110639141
+
Mm9::chr14:122679237..122679247,+ p@chr14:122679237..122679247
+
Mm9::chr14:20110704..20110713,- p@chr14:20110704..20110713
-
Mm9::chr14:21613477..21613497,+ p2@uc007skw.1
Mm9::chr14:22667688..22667709,+ p1@ENSMUST00000169054
Mm9::chr14:35316410..35316417,- p11@Bmpr1a
Mm9::chr14:66456275..66456278,+ p3@Ccdc25
Mm9::chr14:67332471..67332484,- p@chr14:67332471..67332484
-
Mm9::chr15:22968603..22968607,+ p@chr15:22968603..22968607
+
Mm9::chr15:30562737..30562740,+ p@chr15:30562737..30562740
+
Mm9::chr15:32605415..32605418,+ p@chr15:32605415..32605418
+
Mm9::chr15:76079406..76079418,+ p@chr15:76079406..76079418
+
Mm9::chr15:76528445..76528455,- p@chr15:76528445..76528455
-
Mm9::chr16:18289279..18289289,- p2@Dgcr8
Mm9::chr16:18533424..18533434,- p@chr16:18533424..18533434
-
Mm9::chr16:20426448..20426459,- p4@Abcc5
Mm9::chr16:25022070..25022081,+ p@chr16:25022070..25022081
+
Mm9::chr16:29150255..29150267,+ p@chr16:29150255..29150267
+
Mm9::chr16:35235006..35235012,- p1@ENSMUST00000122632
Mm9::chr16:39119601..39119604,+ p@chr16:39119601..39119604
+
Mm9::chr16:55940845..55940848,- p@chr16:55940845..55940848
-
Mm9::chr16:67648813..67648819,+ p@chr16:67648813..67648819
+
Mm9::chr16:98218137..98218155,- p@chr16:98218137..98218155
-
Mm9::chr17:20414261..20414262,+ p@chr17:20414261..20414262
+
Mm9::chr17:23837148..23837168,- -
p@chr17:23837148..23837168
Mm9::chr17:27693558..27693580,+ p1@Hmga1-rs1
p1@Hmga1
Mm9::chr17:27760765..27760776,- p8@Nudt3
Mm9::chr17:28740504..28740506,- p@chr17:28740504..28740506
-
Mm9::chr17:28828407..28828416,+ p3@Mapk14
Mm9::chr17:35379647..35379653,- p@chr17:35379647..35379653
-
Mm9::chr17:36034271..36034276,- p6@2310061I04Rik
Mm9::chr17:39638914..39638920,+ p@chr17:39638914..39638920
+
Mm9::chr17:46995166..46995201,+ p@chr17:46995166..46995201
+
Mm9::chr17:57018060..57018063,+ p@chr17:57018060..57018063
+
Mm9::chr17:74927736..74927741,+ p5@Birc6
Mm9::chr17:82810237..82810240,- p@chr17:82810237..82810240
-
Mm9::chr17:84389812..84389820,- p@chr17:84389812..84389820
-
Mm9::chr17:88072670..88072680,+ p@chr17:88072670..88072680
+
Mm9::chr17:92708555..92708571,+ p@chr17:92708555..92708571
+
Mm9::chr18:10151138..10151141,- p1@ENSMUST00000084007
Mm9::chr18:24103423..24103455,+ p1@ENSMUST00000167150
Mm9::chr18:29493068..29493080,+ p@chr18:29493068..29493080
+
Mm9::chr18:37346349..37346350,+ p@chr18:37346349..37346350
+
Mm9::chr18:38034201..38034204,+ p@chr18:38034201..38034204
+
Mm9::chr18:4396773..4396779,+ p@chr18:4396773..4396779
+
Mm9::chr18:60661402..60661426,- p5@2010002N04Rik
Mm9::chr18:68851704..68851716,+ p@chr18:68851704..68851716
+
Mm9::chr18:80452764..80452780,- p@chr18:80452764..80452780
-
Mm9::chr19:24265967..24265971,- p@chr19:24265967..24265971
-
Mm9::chr19:28086230..28086240,+ p@chr19:28086230..28086240
+
Mm9::chr19:31200587..31200596,- p@chr19:31200587..31200596
-
Mm9::chr19:32337603..32337605,+ p@chr19:32337603..32337605
+
Mm9::chr19:4195028..4195057,+ p@chr19:4195028..4195057
+
Mm9::chr19:56005954..56005970,+ p@chr19:56005954..56005970
+
Mm9::chr1:10220852..10220856,- p@chr1:10220852..10220856
-
Mm9::chr1:133424478..133424488,+ p3@Fam72a
Mm9::chr1:138686149..138686150,- p@chr1:138686149..138686150
-
Mm9::chr1:140810234..140810239,+ p@chr1:140810234..140810239
+
Mm9::chr1:173044076..173044085,- p@chr1:173044076..173044085
-
Mm9::chr1:186898054..186898056,- p@chr1:186898054..186898056
-
Mm9::chr1:26213112..26213117,+ p@chr1:26213112..26213117
+
Mm9::chr1:57789806..57789824,+ p@chr1:57789806..57789824
+
Mm9::chr1:95341999..95342013,- p@chr1:95341999..95342013
-
Mm9::chr2:103601320..103601329,- p2@Nat10
Mm9::chr2:116983326..116983346,+ p@chr2:116983326..116983346
+
Mm9::chr2:118489458..118489498,+ p3@Pak6
Mm9::chr2:125664179..125664199,+ p@chr2:125664179..125664199
+
Mm9::chr2:129024917..129024933,- p@chr2:129024917..129024933
-
Mm9::chr2:136635080..136635086,+ p@chr2:136635080..136635086
+
Mm9::chr2:155455102..155455121,+ p@chr2:155455102..155455121
+
Mm9::chr2:179991810..179991823,- p@chr2:179991810..179991823
-
Mm9::chr2:28332603..28332613,+ p1@ENSMUST00000120702
Mm9::chr2:28980721..28980732,+ p9@Setx
Mm9::chr2:29642770..29642774,- p@chr2:29642770..29642774
-
Mm9::chr2:31859846..31859894,+ +
p@chr2:31859846..31859894
Mm9::chr2:50091439..50091440,+ p@chr2:50091439..50091440
+
Mm9::chr2:51928415..51928426,+ p4@Rif1
Mm9::chr2:61585596..61585615,- p@chr2:61585596..61585615
-
Mm9::chr2:69637744..69637745,- p1@ENSMUST00000120263
Mm9::chr2:69660082..69660091,+ p8@Klhl23
Mm9::chr2:71711403..71711406,+ p3@Pdk1
Mm9::chr2:84667236..84667255,+ p2@Timm10
Mm9::chr3:104442352..104442365,- p@chr3:104442352..104442365
-
Mm9::chr3:129534292..129534324,- p3@Gar1
Mm9::chr3:132973052..132973055,+ p3@Ppa2
Mm9::chr3:138421086..138421101,+ p@chr3:138421086..138421101
+
Mm9::chr3:18077630..18077636,- p1@ENSMUST00000082660
Mm9::chr3:37264373..37264374,+ p@chr3:37264373..37264374
+
Mm9::chr3:40549243..40549246,+ p7@Hspa4l
Mm9::chr3:4093865..4093874,+ p@chr3:4093865..4093874
+
Mm9::chr3:46898143..46898161,+ p@chr3:46898143..46898161
+
Mm9::chr3:58329815..58329819,- p5@Serp1
Mm9::chr4:106595836..106595881,+ p3@Ssbp3
Mm9::chr4:116692045..116692057,+ p2@Eif2b3
Mm9::chr4:132925617..132925624,+ p3@Slc9a1
Mm9::chr4:135415115..135415120,+ p@chr4:135415115..135415120
+
Mm9::chr4:140256517..140256528,+ p7@Rcc2
Mm9::chr4:149653329..149653337,+ p@chr4:149653329..149653337
+
Mm9::chr4:151401710..151401733,- p2@Zbtb48
Mm9::chr4:18120667..18120669,+ p1@ENSMUST00000120806
Mm9::chr4:30722097..30722099,+ p@chr4:30722097..30722099
+
Mm9::chr4:47956622..47956628,+ p@chr4:47956622..47956628
+
Mm9::chr4:94270212..94270229,+ p@chr4:94270212..94270229
+
Mm9::chr5:109986818..109986824,- p@chr5:109986818..109986824
-
Mm9::chr5:118477802..118477809,+ p2@Tesc
Mm9::chr5:121933793..121933805,+ p@chr5:121933793..121933805
+
Mm9::chr5:130363158..130363175,- p2@Chchd2
p2@Gm12350
p2@Gm13202
p2@LOC100045688
Mm9::chr5:133549178..133549181,+ p@chr5:133549178..133549181
+
Mm9::chr5:136720718..136720729,- p4@Sh2b2
Mm9::chr5:136720801..136720819,- p2@Sh2b2
Mm9::chr5:138110799..138110803,- p@chr5:138110799..138110803
-
Mm9::chr5:138228870..138228889,- -
p@chr5:138228870..138228889
Mm9::chr5:144493502..144493512,+ +
p@chr5:144493502..144493512
Mm9::chr5:32048977..32048981,+ +
p@chr5:32048977..32048981
Mm9::chr5:38937693..38937699,+ p1@ENSMUST00000082485
Mm9::chr5:43006434..43006437,+ p@chr5:43006434..43006437
+
Mm9::chr5:60162434..60162435,+ p@chr5:60162434..60162435
+
Mm9::chr5:64336856..64336857,+ +
p@chr5:64336856..64336857
Mm9::chr5:6951726..6951734,+ p@chr5:6951726..6951734
+
Mm9::chr5:75599747..75599751,+ p@chr5:75599747..75599751
+
Mm9::chr6:109075510..109075511,+ p@chr6:109075510..109075511
+
Mm9::chr6:113277013..113277025,+ p5@Ogg1
Mm9::chr6:124915596..124915608,+ p@chr6:124915596..124915608
+
Mm9::chr6:17712881..17712885,+ p@chr6:17712881..17712885
+
Mm9::chr6:25613714..25613715,+ p@chr6:25613714..25613715
+
Mm9::chr6:3151426..3151427,+ p@chr6:3151426..3151427
+
Mm9::chr6:48239215..48239226,+ p1@ENSMUST00000175147
Mm9::chr6:49493767..49493769,- -
p@chr6:49493767..49493769
Mm9::chr6:62588153..62588180,+ p@chr6:62588153..62588180
+
Mm9::chr6:63863425..63863434,+ p@chr6:63863425..63863434
+
Mm9::chr6:70918796..70918798,+ p@chr6:70918796..70918798
+
Mm9::chr6:76582649..76582650,+ p1@ENSMUST00000157475
Mm9::chr6:82676642..82676651,- p3@Hk2
Mm9::chr6:83928282..83928287,+ p@chr6:83928282..83928287
+
Mm9::chr6:86284003..86284005,+ p1@ENSMUST00000101207
Mm9::chr7:117147088..117147090,+ p1@ENSMUST00000083455
Mm9::chr7:128850977..128850986,- p2@Usp31
Mm9::chr7:135020060..135020124,- p2@Zfp668
Mm9::chr7:13510788..13510804,+ p@chr7:13510788..13510804
+
Mm9::chr7:147323458..147323492,+ p2@Mtg1
Mm9::chr7:148513637..148513648,- p6@Deaf1
Mm9::chr7:26472656..26472667,+ p@chr7:26472656..26472667
+
Mm9::chr7:46773478..46773487,+ p@chr7:46773478..46773487
+
Mm9::chr7:82602216..82602228,+ p@chr7:82602216..82602228
+
Mm9::chr7:85222503..85222504,+ p@chr7:85222503..85222504
+
Mm9::chr7:86878223..86878231,- p@chr7:86878223..86878231
-
Mm9::chr7:87652663..87652667,+ p1@ENSMUST00000166096
Mm9::chr8:109963485..109963493,- p2@LOC100046297
p2@Rps26
Mm9::chr8:114045973..114046012,- p1@Wdr59
Mm9::chr8:11715272..11715283,- p@chr8:11715272..11715283
-
Mm9::chr8:119445278..119445292,- p2@2310061C15Rik
Mm9::chr8:120443979..120443989,+ p@chr8:120443979..120443989
+
Mm9::chr8:12672135..12672146,- p2@Tubgcp3
Mm9::chr8:127473462..127473466,+ p@chr8:127473462..127473466
+
Mm9::chr8:130962229..130962233,- p@chr8:130962229..130962233
-
Mm9::chr8:41940449..41940456,- p@chr8:41940449..41940456
-
Mm9::chr8:59103982..59103988,- p@chr8:59103982..59103988
-
Mm9::chr8:70841610..70841616,+ p@chr8:70841610..70841616
+
Mm9::chr8:72794143..72794161,+ p@chr8:72794143..72794161
+
Mm9::chr8:85966323..85966335,- p4@LOC100505320
p4@Scoc
Mm9::chr8:87379572..87379574,- p@chr8:87379572..87379574
-
Mm9::chr9:100619820..100619824,+ p@chr9:100619820..100619824
+
Mm9::chr9:106331717..106331728,+ p5@Gm10913
p5@Gm13141
p5@Gm13841
p5@Gm6344
p5@Gm6887
p5@Gm8210
p5@Rpl29
Mm9::chr9:106331795..106331810,+ p3@Gm10913
p3@Gm13141
p3@Gm13841
p3@Gm6344
p3@Gm6887
p3@Gm8210
p3@Rpl29
Mm9::chr9:107192178..107192197,- p4@Mapkapk3
Mm9::chr9:107877983..107877991,+ p8@Uba7
Mm9::chr9:108839053..108839073,+ +
p@chr9:108839053..108839073
Mm9::chr9:110183763..110183770,+ p@chr9:110183763..110183770
+
Mm9::chr9:111787794..111787797,+ p@chr9:111787794..111787797
+
Mm9::chr9:20879724..20879747,- p@chr9:20879724..20879747
-
Mm9::chr9:22193712..22193760,+ p@chr9:22193712..22193760
+
Mm9::chr9:35018874..35018886,+ +
p@chr9:35018874..35018886
Mm9::chr9:66366451..66366460,- -
p@chr9:66366451..66366460
Mm9::chr9:88421624..88421635,- p1@ENSMUST00000122754
Mm9::chr9:96667230..96667255,+ p@chr9:96667230..96667255
+
Mm9::chr9:98231670..98231671,+ p@chr9:98231670..98231671
+
Mm9::chrX:100867902..100867904,+ p@chrX:100867902..100867904
+
Mm9::chrX:100868002..100868029,+ p@chrX:100868002..100868029
+
Mm9::chrX:15503216..15503221,+ p@chrX:15503216..15503221
+
Mm9::chrX:165625137..165625142,- p1@Amelx
Mm9::chrX:74756561..74756568,+ p6@Tbl1x
Mm9::chrX:83021876..83021887,- p3@Gyk
Mm9::chrX:99384710..99384727,- p3@Rps4x


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0006793phosphorus metabolic process0.00278044920095333
GO:0006796phosphate metabolic process0.00278044920095333
GO:0000166nucleotide binding0.00278044920095333
GO:0032555purine ribonucleotide binding0.00278044920095333
GO:0032553ribonucleotide binding0.00278044920095333
GO:0017076purine nucleotide binding0.00368169664019364
GO:0043283biopolymer metabolic process0.00716610501837858
GO:0016310phosphorylation0.00883445904346457
GO:0005524ATP binding0.0108904151118522
GO:0043687post-translational protein modification0.0108904151118522
GO:0032559adenyl ribonucleotide binding0.0108904151118522
GO:0030554adenyl nucleotide binding0.0157073919173566
GO:0000922spindle pole0.016627503658916
GO:0016773phosphotransferase activity, alcohol group as acceptor0.0272645472091043
GO:0043170macromolecule metabolic process0.0272645472091043
GO:0006464protein modification process0.0272645472091043
GO:0043412biopolymer modification0.0358960328264356
GO:0004674protein serine/threonine kinase activity0.0463960237421549
GO:0002260lymphocyte homeostasis0.0499635108981098
GO:0044237cellular metabolic process0.0499635108981098
GO:0006468protein amino acid phosphorylation0.0499635108981098



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data
disease_data


Cell Type
Ontology termp-valuen
stem cell1.15e-1697
somatic stem cell2.04e-1591
multi fate stem cell2.04e-1591
animal cell2.50e-14115
eukaryotic cell2.50e-14115
somatic cell8.39e-14118
neuron3.09e-1333
neuronal stem cell3.09e-1333
neuroblast3.09e-1333
electrically signaling cell3.09e-1333
neural cell1.29e-1243
autonomic neuron2.99e-129
ectodermal cell3.02e-1244
neurectodermal cell3.02e-1244
electrically responsive cell1.03e-1039
electrically active cell1.03e-1039
non-terminally differentiated cell1.27e-1049
erythroid lineage cell7.05e-093
erythroblast7.05e-093
erythroid progenitor cell7.05e-093
proerythroblast7.05e-093
myeloid lineage restricted progenitor cell7.84e-0913
embryonic cell1.78e-0870
hematopoietic lineage restricted progenitor cell4.43e-0825
myeloid cell5.44e-0716
megakaryocyte-erythroid progenitor cell5.86e-079

Disease
Ontology termp-valuen
hematologic cancer7.05e-093
immune system cancer7.05e-093
leukemia7.05e-093


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000529079
MA0004.10.337416
MA0006.10.392102
MA0007.10.199264
MA0009.10.0456175
MA0014.10.0280141
MA0017.10.575008
MA0019.11.01765
MA0024.10.568291
MA0025.10.421429
MA0027.11.10516
MA0028.11.12937
MA0029.10.172844
MA0030.10.328249
MA0031.10.429485
MA0038.10.881484
MA0040.10.743016
MA0041.11.83457
MA0042.10.589403
MA0043.10.227517
MA0046.10.321618
MA0048.10.00410059
MA0050.10.178533
MA0051.11.44303
MA0052.10.504703
MA0055.11.47104e-05
MA0056.10
MA0057.17.80767e-05
MA0058.10.247397
MA0059.10.295411
MA0060.10.960199
MA0061.10.0130929
MA0063.10
MA0066.10.0702137
MA0067.10.297269
MA0068.10.0390626
MA0069.11.86516
MA0070.11.04741
MA0071.10.176709
MA0072.10.0466367
MA0073.14.30099e-07
MA0074.10.0835301
MA0076.10.728693
MA0077.10.412388
MA0078.10.67638
MA0081.10.29995
MA0083.10.0905221
MA0084.10.733105
MA0087.10.35113
MA0088.10.0214995
MA0089.10
MA0090.10.0604845
MA0091.10.666566
MA0092.10.0996507
MA0093.10.325046
MA0095.10
MA0098.10
MA0100.10.0364522
MA0101.10.120544
MA0103.10.0604134
MA0105.13.24767e-05
MA0106.10.137612
MA0107.10.0811586
MA0108.20.280346
MA0109.10
MA0111.10.364443
MA0113.10.051541
MA0114.10.0724874
MA0115.10.71447
MA0116.10.00697585
MA0117.10.193583
MA0119.10.00666893
MA0122.10.216114
MA0124.11.85776
MA0125.10.175417
MA0130.10
MA0131.10.364106
MA0132.10
MA0133.10
MA0135.10.508454
MA0136.10.179316
MA0139.10.0216782
MA0140.10.747668
MA0141.10.260565
MA0142.10.836502
MA0143.10.327593
MA0144.10.0540792
MA0145.10.00198102
MA0146.10.000131072
MA0147.10.258564
MA0148.11.26668
MA0149.18.96287
MA0062.21.22883
MA0035.20.442318
MA0039.20.00328646
MA0138.20.510766
MA0002.20.074558
MA0137.20.0862568
MA0104.20.315328
MA0047.20.497685
MA0112.20.00073081
MA0065.20.00205346
MA0150.10.0836883
MA0151.10
MA0152.10.233374
MA0153.10.29589
MA0154.10.000375226
MA0155.10.0522596
MA0156.10.0446889
MA0157.10.186924
MA0158.10
MA0159.10.00965168
MA0160.10.0855515
MA0161.10
MA0162.10.000444922
MA0163.10.000215173
MA0164.10.402854
MA0080.20.0188522
MA0018.20.120018
MA0099.20.0523238
MA0079.26.99322e-11
MA0102.20.301415
MA0258.10.0487384
MA0259.10.420343
MA0442.10