FFCP PHASE1:Hg19::chr11:66824276..66824298,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000066!2.14e-35!254;CL:0000220!2.62e-18!246;CL:0002321!4.89e-18!248;CL:0002076!3.51e-13!43;CL:0000223!2.02e-11!59;CL:0000076!9.60e-10!62;CL:0000222!3.08e-08!119;CL:0002251!4.03e-07!21;CL:0000548!7.32e-07!679;CL:0000004!7.32e-07!679;CL:0000255!7.32e-07!679 | |ontology_enrichment_celltype=CL:0000066!2.14e-35!254;CL:0000220!2.62e-18!246;CL:0002321!4.89e-18!248;CL:0002076!3.51e-13!43;CL:0000223!2.02e-11!59;CL:0000076!9.60e-10!62;CL:0000222!3.08e-08!119;CL:0002251!4.03e-07!21;CL:0000548!7.32e-07!679;CL:0000004!7.32e-07!679;CL:0000255!7.32e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.92e-10;42!CL:0002251;5.46e-07;20!CL:0000349;5.47e-07;19!CL:0002368;6.13e-07;13 | |ontology_enrichment_celltype_v019=CL:0002076;4.92e-10;42!CL:0002251;5.46e-07;20!CL:0000349;5.47e-07;19!CL:0002368;6.13e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-36,253;CL:0002321,2.46e-19,250;CL:0002076,1.57e-13,42;CL:0000223,1.88e-11,58;CL:0000076,9.40e-11,63;CL:0000222,1.10e-08,121;CL:0002251,4.70e-07,20;CL:0002368,6.00e-07,13;CL:0000349,7.83e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;9.06e-07;58 | |ontology_enrichment_development_v019=CL:0000223;9.06e-07;58 | ||
|ontology_enrichment_disease=DOID:305!1.28e-08!106 | |ontology_enrichment_disease=DOID:305!1.28e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:299;8.48e-07;25 | |ontology_enrichment_disease_v019=DOID:299;8.48e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.97e-08,106;DOID:299,5.73e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.16e-16!238;UBERON:0009142!2.16e-16!238;UBERON:0002100!4.08e-16!216;UBERON:0004119!6.96e-16!169;UBERON:0000925!6.96e-16!169;UBERON:0006595!6.96e-16!169;UBERON:0000481!4.23e-15!347;UBERON:0000468!2.78e-13!659;UBERON:0005256!1.97e-12!143;UBERON:0000475!6.82e-12!365;UBERON:0001007!1.33e-11!155;UBERON:0001555!1.33e-11!155;UBERON:0007026!1.33e-11!155;UBERON:0000466!1.79e-11!126;UBERON:0000464!7.53e-11!104;UBERON:0009569!9.07e-11!113;UBERON:0001048!1.07e-10!168;UBERON:0000483!3.04e-10!309;UBERON:0000077!3.81e-10!130;UBERON:0000119!5.59e-10!312;UBERON:0001004!1.05e-09!72;UBERON:0000490!3.36e-09!138;UBERON:0000477!3.97e-09!286;UBERON:0000467!4.07e-09!625;UBERON:0000480!5.06e-09!626;UBERON:0000915!5.78e-09!52;UBERON:0003914!1.26e-08!118;UBERON:0000064!1.91e-08!219;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0001444!2.43e-08!48;UBERON:0002050!1.03e-07!605;UBERON:0005423!1.03e-07!605;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0000922!1.48e-07!612;UBERON:0005631!2.93e-07!14;UBERON:0000158!2.93e-07!14;UBERON:0001041!3.23e-07!98;UBERON:0000486!3.32e-07!82;UBERON:0000161!3.64e-07!35;UBERON:0003064!3.75e-07!37;UBERON:0004923!5.04e-07!57;UBERON:0003102!5.13e-07!95;UBERON:0000926!6.23e-07!448;UBERON:0004120!6.23e-07!448;UBERON:0006603!6.23e-07!448;UBERON:0000063!7.18e-07!97;UBERON:0004111!7.84e-07!241 | |ontology_enrichment_uberon=UBERON:0003104!2.16e-16!238;UBERON:0009142!2.16e-16!238;UBERON:0002100!4.08e-16!216;UBERON:0004119!6.96e-16!169;UBERON:0000925!6.96e-16!169;UBERON:0006595!6.96e-16!169;UBERON:0000481!4.23e-15!347;UBERON:0000468!2.78e-13!659;UBERON:0005256!1.97e-12!143;UBERON:0000475!6.82e-12!365;UBERON:0001007!1.33e-11!155;UBERON:0001555!1.33e-11!155;UBERON:0007026!1.33e-11!155;UBERON:0000466!1.79e-11!126;UBERON:0000464!7.53e-11!104;UBERON:0009569!9.07e-11!113;UBERON:0001048!1.07e-10!168;UBERON:0000483!3.04e-10!309;UBERON:0000077!3.81e-10!130;UBERON:0000119!5.59e-10!312;UBERON:0001004!1.05e-09!72;UBERON:0000490!3.36e-09!138;UBERON:0000477!3.97e-09!286;UBERON:0000467!4.07e-09!625;UBERON:0000480!5.06e-09!626;UBERON:0000915!5.78e-09!52;UBERON:0003914!1.26e-08!118;UBERON:0000064!1.91e-08!219;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0001444!2.43e-08!48;UBERON:0002050!1.03e-07!605;UBERON:0005423!1.03e-07!605;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0000922!1.48e-07!612;UBERON:0005631!2.93e-07!14;UBERON:0000158!2.93e-07!14;UBERON:0001041!3.23e-07!98;UBERON:0000486!3.32e-07!82;UBERON:0000161!3.64e-07!35;UBERON:0003064!3.75e-07!37;UBERON:0004923!5.04e-07!57;UBERON:0003102!5.13e-07!95;UBERON:0000926!6.23e-07!448;UBERON:0004120!6.23e-07!448;UBERON:0006603!6.23e-07!448;UBERON:0000063!7.18e-07!97;UBERON:0004111!7.84e-07!241 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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|phase1_expression=7.81217030863394,10.7050261945492,6.90676580070259,17.0124607200322,10.2801051718276,12.2127393374052,7.59899634504932,0.631719873426831,1.82829939739887,10.5665592695649,46.0548770861802,17.0384270261534,24.0027950187893,9.90130823680373,16.2384714106679,5.3786011716142,2.41077811209591,2.92124036154949,3.90346239032406,5.54044761345546,15.300051843319,10.3440058087769,3.43483184557268,3.14811177667634,1.75759695432724,0,0,0,0,0,0.77408061658038,44.1322187749885,56.0243008927545,51.0260534030167,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0,0,0.661044872784862,0.954053754535364,0,0,0.382273228125229,0,0,0,0.196709770113833,0.393010762749165,0,0.334372990781356,0,0,1.94826728407911,0.222820913770347,0,0.221533894583621,0.270803863765016,0.128091319725675,0,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0.383959833463255,0,0,0,0.201606743224732,0,0,2.43806866313962,3.35350429851818,6.13740296848946,7.59022220007589,19.5521785147997,15.7882705667298,5.5670016293577,14.1124112387764,6.42836756715661,6.65188192387692,5.35792192728069,2.5540919722054,50.2727497843708,43.3817798057782,0,0,0.132957960518865,0,0,0,1.98762407366705,1.72046919021225,6.59566953054429,5.08777147731609,3.35599548967925,6.60283300656162,2.92592953151535,3.35941786920128,2.49036383880697,3.68192674041137,13.2933674646019,12.9246257972147,24.8943298699133,4.04429388380456,5.67099363517232,3.75058858793135,4.93964619777574,4.0540132973996,9.19899824795299,3.79706263827252,6.59526278149466,0,3.87780264148325,50.1508159963915,4.96971951695318,4.81195944325403,0.926864265692532,0,1.41867352879343,5.60677600142307,2.1349799145941,4.9333509683432,3.11211035399766,2.96363478553314,2.12500474047496,5.90293967815232,2.88087962239999,6.32667865951251,3.1216007683032,1.71141546463335,2.39117888882882,1.87895197830024,0.971237666208789,1.26405726032024,3.47062091133319,5.03620700978249,5.47626640231557,8.31602000097437,9.89067717114228,1.82032272387605,17.965453545406,2.18836948140286,2.87772595705518,2.77064115484183,3.95079858792754,4.90380473278431,12.0190447125277,1.47461838108027,0.717558542755448,5.55249210928275,3.17897851739343,1.50045548042201,3.60683852334536,2.57640540045629,8.93360910391631,1.5189869901714,4.38466523225394,2.01947019395292,9.02089006694534,6.14255015911485,1.77504796258307,3.42557133973977,3.56077243852024,27.8295628555147,19.3649745619493,16.9214711279512,1.70763188581434,1.06023814657188,1.51052125730374,1.34759371519982,2.27088765788066,1.82488679537915,1.56449532329816,7.07565032012174,6.90674606762403,8.35862270457562,12.271951188383,8.75470320294845,8.26064981382698,4.33819853790268,8.27204795492955,7.40790109914181,5.69449485866632,7.14605933248871,6.67152981426177,5.77120735419586,2.95262181849859,0,7.4083322039652,13.2307840246988,3.80265104465493,9.82827216677626,3.54473944008842,0,3.07471096357784,4.28919525746314,34.4615896183084,60.6969467591146,17.3915122272121,22.9619343993153,12.7065239071027,4.15973914111831,5.77325368101093,3.24605133930215,5.51820862908362,6.92958949253154,7.87075371380238,6.46864117597634,30.0277671224525,30.0470156733205,0,1.40402559083543,0.445893486866185,44.0549019737852,21.501712409454,16.7294614746016,23.9121255616605,26.4476884047705,48.3062175748166,0,0,0.414656231081544,0.432359860250884,0.12624243342638,0,1.90994212779139,0,6.84289784090821,0.308482478109971,0.600686115687835,1.14330573052231,1.45770409648969,0.87192013766656,1.10007428731425,8.66120495577111,21.4593867511129,0.845302752556,5.05282421511254,3.12022310734098,2.82928111688356,1.41849132023278,7.72624319146688,3.43147184779554,5.42621605391443,5.76268235746538,0.325736184293735,4.97548728239564,0.791951872933429,16.8806051153368,14.816068796205,18.6949493510447,0,0,0,5.03212196532324,8.04033550838797,4.27910715122155,2.60606352001643,4.72595541865882,1.79060963239896,0,0,0,0,0.254094624222463,0,0,0.670065061337395,0,0,0,0,9.81531933753119,15.0051156317903,14.377046256086,7.69492187663986,12.4900292158013,9.77754973210395,9.01988895443892,7.52365249319297,20.4666753650386,10.3473071292505,5.31380478828349,7.55913591020983,5.03924963914881,3.72022199179207,1.71571711905428,0.206768026122887,0,0,75.4787652901186,61.5811126188839,32.3557613862758,8.68377327365719,2.91577749247319,15.9976253826852,9.99485364194467,6.14048698880044,8.68611174175481,19.2943486378488,0.308419387605311,2.48586415438378,1.23190734020714,1.55776328755086,2.5566283261191,2.1754700926492,16.8425435054759,19.9815745990895,3.3296189967736,2.00300284807389,4.72047893853927,8.57279264524082,5.00599691178696,19.6087442294214,16.0753147118587,6.12199447578679,5.68666920354483,4.25234263191289,2.15915916102139,16.9649977959318,11.108803939298,21.0709705019038,11.7243085600718,21.6079762321468,11.4176124908311,0,0,3.84675187674584,6.232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| ||
|short_description=p2@RHOD | |short_description=p2@RHOD | ||
}} | }} |
Revision as of 12:40, 17 November 2012
Short description: | p2@RHOD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RHOD_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000308831, NM_014578, uc001ojv.2_5end |
EntrezGene: | RHOD |
HGNC: | 670 |
UniProt: | O00212 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.73e-36 | 253 |
embryonic cell | 2.46e-19 | 250 |
endo-epithelial cell | 1.57e-13 | 42 |
endodermal cell | 1.88e-11 | 58 |
squamous epithelial cell | 9.40e-11 | 63 |
mesodermal cell | 1.10e-08 | 121 |
epithelial cell of alimentary canal | 4.70e-07 | 20 |
respiratory epithelial cell | 6.00e-07 | 13 |
extraembryonic cell | 7.83e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.40e-15 | 160 |
endoderm | 1.40e-15 | 160 |
presumptive endoderm | 1.40e-15 | 160 |
trunk | 1.44e-14 | 199 |
digestive system | 1.94e-11 | 145 |
digestive tract | 1.94e-11 | 145 |
primitive gut | 1.94e-11 | 145 |
primordium | 1.33e-10 | 160 |
subdivision of trunk | 1.40e-10 | 112 |
respiratory system | 6.43e-10 | 74 |
mesenchyme | 7.62e-10 | 160 |
entire embryonic mesenchyme | 7.62e-10 | 160 |
head | 3.03e-09 | 56 |
epithelial tube | 9.08e-09 | 117 |
thoracic segment of trunk | 1.00e-08 | 52 |
unilaminar epithelium | 1.42e-08 | 148 |
trunk mesenchyme | 1.45e-08 | 122 |
subdivision of head | 1.78e-08 | 49 |
surface structure | 2.68e-08 | 99 |
epithelium | 3.04e-08 | 306 |
organ component layer | 3.13e-08 | 66 |
cell layer | 6.70e-08 | 309 |
subdivision of digestive tract | 6.71e-08 | 118 |
orifice | 1.15e-07 | 36 |
anterior region of body | 1.40e-07 | 62 |
craniocervical region | 1.40e-07 | 62 |
extraembryonic membrane | 1.81e-07 | 14 |
membranous layer | 1.81e-07 | 14 |
foregut | 5.51e-07 | 87 |
multilaminar epithelium | 6.77e-07 | 83 |
mouth | 8.51e-07 | 29 |
stomodeum | 8.51e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.97e-08 | 106 |
adenocarcinoma | 5.73e-07 | 25 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.