FFCP PHASE1:Hg19::chr11:120008813..120008831,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23650|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17274|TSSclassifier=S|UniProt=E9PJD4|association_with_transcript=0bp_to_ENST00000475051_5end|description=CAGE_peak_1_at_TRIM29_5end|id=chr11:120008813..120008831,-|ontology_enrichment_celltype=CL:0000066!1.27e-23!254;CL:0002076!7.99e-19!43;CL:0002251!2.99e-12!21;CL:0000223!1.88e-11!59;CL:0002159!4.17e-09!13;CL:0002368!8.55e-07!13|ontology_enrichment_celltype_v019=CL:0002076;3.90e-16;42!CL:0002251;3.77e-14;20!CL:0002159;9.02e-11;14!CL:0002368;6.36e-09;13!CL:0000622;6.75e-08;5|ontology_enrichment_celltype_v019_2=CL:0000066,2.82e-22,253;CL:0002076,3.10e-21,42;CL:0002251,3.81e-14,20;CL:0000223,6.82e-14,58;CL:0002159,8.93e-11,14;CL:0002368,6.42e-09,13;CL:0000622,6.75e-08,5|ontology_enrichment_development_v019=UBERON:0008947;1.19e-08;29!CL:0000223;1.11e-07;58|ontology_enrichment_disease=DOID:305!1.23e-15!106;DOID:0050687!2.76e-09!143;DOID:1749!4.22e-09!14|ontology_enrichment_disease_v019=DOID:1749;7.70e-12;14|ontology_enrichment_disease_v019_2=DOID:305,6.19e-14,106;DOID:1749,7.70e-12,14;DOID:0050687,1.76e-08,143|ontology_enrichment_uberon=UBERON:0001004!2.32e-22!72;UBERON:0004119!8.94e-21!169;UBERON:0000925!8.94e-21!169;UBERON:0006595!8.94e-21!169;UBERON:0000065!1.41e-15!53;UBERON:0000077!1.47e-15!130;UBERON:0001007!6.39e-15!155;UBERON:0001555!6.39e-15!155;UBERON:0007026!6.39e-15!155;UBERON:0004921!4.53e-13!129;UBERON:0004185!4.53e-13!129;UBERON:0000161!4.49e-12!35;UBERON:0000072!9.68e-12!46;UBERON:0008947!9.99e-12!38;UBERON:0003258!9.99e-12!38;UBERON:0001041!5.89e-11!98;UBERON:0000166!3.92e-10!21;UBERON:0000062!7.71e-10!511;UBERON:0001557!9.38e-10!19;UBERON:0005631!3.93e-09!14;UBERON:0000158!3.93e-09!14;UBERON:0001737!4.37e-09!9;UBERON:0000064!7.18e-09!219;UBERON:0000165!4.00e-08!28;UBERON:0000930!4.00e-08!28;UBERON:0000468!2.37e-07!659;UBERON:0000922!3.28e-07!612;UBERON:0005156!3.33e-07!59;UBERON:0000990!3.33e-07!59;UBERON:0000464!3.77e-07!104;UBERON:0000344!4.25e-07!12;UBERON:0003124!4.29e-07!7;UBERON:0004175!9.36e-07!25|ontology_enrichment_uberon_v019=UBERON:0000065;4.75e-12;44!UBERON:0001737;1.77e-11;9!UBERON:0001557;1.77e-11;9!UBERON:0000161;2.34e-11;19!UBERON:0000166;2.34e-11;19!UBERON:0001004;3.00e-11;65!UBERON:0000165;1.81e-10;28!UBERON:0000072;8.61e-10;37!UBERON:0001041;2.78e-08;14!UBERON:0001044;4.02e-08;6!UBERON:0003293;4.02e-08;6!UBERON:0003294;4.02e-08;6!UBERON:0010047;4.02e-08;6!UBERON:0003408;4.02e-08;6!UBERON:0000167;4.02e-08;6!UBERON:0005631;4.25e-08;10!UBERON:0000158;4.25e-08;10!UBERON:0000974;5.33e-08;6!UBERON:0000365;1.35e-07;5!UBERON:0000344;3.29e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0001004,4.04e-25,74;UBERON:0004119,5.30e-23,160;UBERON:0000925,5.30e-23,160;UBERON:0006595,5.30e-23,160;UBERON:0000065,2.06e-17,54;UBERON:0001007,7.57e-16,145;UBERON:0001555,7.57e-16,145;UBERON:0007026,7.57e-16,145;UBERON:0000161,6.69e-14,36;UBERON:0004921,8.07e-14,118;UBERON:0001041,8.67e-14,87;UBERON:0000072,1.43e-13,47;UBERON:0001557,5.59e-13,19;UBERON:0000166,9.19e-13,22;UBERON:0008947,2.46e-12,38;UBERON:0003258,2.46e-12,38;UBERON:0005631,7.01e-12,14;UBERON:0000158,7.01e-12,14;UBERON:0001737,1.81e-11,9;UBERON:0000165,6.27e-10,29;UBERON:0000930,6.27e-10,29;UBERON:0003102,8.71e-10,99;UBERON:0003124,7.47e-09,7;UBERON:0000153,1.41e-08,62;UBERON:0007811,1.41e-08,62;UBERON:0001044,4.02e-08,6;UBERON:0003293,4.02e-08,6;UBERON:0003294,4.02e-08,6;UBERON:0010047,4.02e-08,6;UBERON:0000167,4.02e-08,6;UBERON:0000365,1.34e-07,5;UBERON:0004175,2.03e-07,25;UBERON:0003408,2.20e-07,10;UBERON:0000974,2.71e-07,10;UBERON:0000344,3.32e-07,20;UBERON:0000033,6.14e-07,56|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,2.79120467188971,46.0911295194663,9.75937819445278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.88301268601089,182.964823671307,176.506668404055,193.011593307063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.8753746343018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,3.92937226493138,743.526683405079,610.681977265955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,542.06490681317,0,0,0,0,2.12801029319014,2.80338800071154,0,0.24666754841716,0,0,0,0,0,0,0,6.27519003698894,0,0,0,0.421352420106746,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,138.568031718084,124.644977110011,126.480826566551,0,0,0,0.518305275076852,0.252320850875628,0,0,0,0,0,0,133.568377244984,151.389051690135,121.710570091158,134.338058788056,154.912284749701,118.872580174659,141.033548335532,155.799843309525,126.197067478416,0,0,0,0,0,0,0,0,6.02643348861256,0,414.197577132153,348.445435098621,138.830510900462,333.966521686816,0,0,0,0,0,0,0,0,8.69224837755203,12.8772924314231,0,0,0,116.229954143603,102.637080329503,117.673330711181,185.744376085707,152.292183781316,280.636121148935,0,0,3.52457796419313,4.4677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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |||
|TSSclassifier=S | |||
|UniProt=E9PJD4 | |||
|association_with_transcript=0bp_to_ENST00000475051_5end | |||
|description=CAGE_peak_1_at_TRIM29_5end | |||
|id=chr11:120008813..120008831,- | |||
|ontology_enrichment_celltype=CL:0000066!1.27e-23!254;CL:0002076!7.99e-19!43;CL:0002251!2.99e-12!21;CL:0000223!1.88e-11!59;CL:0002159!4.17e-09!13;CL:0002368!8.55e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.90e-16;42!CL:0002251;3.77e-14;20!CL:0002159;9.02e-11;14!CL:0002368;6.36e-09;13!CL:0000622;6.75e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.82e-22,253;CL:0002076,3.10e-21,42;CL:0002251,3.81e-14,20;CL:0000223,6.82e-14,58;CL:0002159,8.93e-11,14;CL:0002368,6.42e-09,13;CL:0000622,6.75e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.19e-08;29!CL:0000223;1.11e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.23e-15!106;DOID:0050687!2.76e-09!143;DOID:1749!4.22e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.70e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.19e-14,106;DOID:1749,7.70e-12,14;DOID:0050687,1.76e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.32e-22!72;UBERON:0004119!8.94e-21!169;UBERON:0000925!8.94e-21!169;UBERON:0006595!8.94e-21!169;UBERON:0000065!1.41e-15!53;UBERON:0000077!1.47e-15!130;UBERON:0001007!6.39e-15!155;UBERON:0001555!6.39e-15!155;UBERON:0007026!6.39e-15!155;UBERON:0004921!4.53e-13!129;UBERON:0004185!4.53e-13!129;UBERON:0000161!4.49e-12!35;UBERON:0000072!9.68e-12!46;UBERON:0008947!9.99e-12!38;UBERON:0003258!9.99e-12!38;UBERON:0001041!5.89e-11!98;UBERON:0000166!3.92e-10!21;UBERON:0000062!7.71e-10!511;UBERON:0001557!9.38e-10!19;UBERON:0005631!3.93e-09!14;UBERON:0000158!3.93e-09!14;UBERON:0001737!4.37e-09!9;UBERON:0000064!7.18e-09!219;UBERON:0000165!4.00e-08!28;UBERON:0000930!4.00e-08!28;UBERON:0000468!2.37e-07!659;UBERON:0000922!3.28e-07!612;UBERON:0005156!3.33e-07!59;UBERON:0000990!3.33e-07!59;UBERON:0000464!3.77e-07!104;UBERON:0000344!4.25e-07!12;UBERON:0003124!4.29e-07!7;UBERON:0004175!9.36e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;4.75e-12;44!UBERON:0001737;1.77e-11;9!UBERON:0001557;1.77e-11;9!UBERON:0000161;2.34e-11;19!UBERON:0000166;2.34e-11;19!UBERON:0001004;3.00e-11;65!UBERON:0000165;1.81e-10;28!UBERON:0000072;8.61e-10;37!UBERON:0001041;2.78e-08;14!UBERON:0001044;4.02e-08;6!UBERON:0003293;4.02e-08;6!UBERON:0003294;4.02e-08;6!UBERON:0010047;4.02e-08;6!UBERON:0003408;4.02e-08;6!UBERON:0000167;4.02e-08;6!UBERON:0005631;4.25e-08;10!UBERON:0000158;4.25e-08;10!UBERON:0000974;5.33e-08;6!UBERON:0000365;1.35e-07;5!UBERON:0000344;3.29e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,4.04e-25,74;UBERON:0004119,5.30e-23,160;UBERON:0000925,5.30e-23,160;UBERON:0006595,5.30e-23,160;UBERON:0000065,2.06e-17,54;UBERON:0001007,7.57e-16,145;UBERON:0001555,7.57e-16,145;UBERON:0007026,7.57e-16,145;UBERON:0000161,6.69e-14,36;UBERON:0004921,8.07e-14,118;UBERON:0001041,8.67e-14,87;UBERON:0000072,1.43e-13,47;UBERON:0001557,5.59e-13,19;UBERON:0000166,9.19e-13,22;UBERON:0008947,2.46e-12,38;UBERON:0003258,2.46e-12,38;UBERON:0005631,7.01e-12,14;UBERON:0000158,7.01e-12,14;UBERON:0001737,1.81e-11,9;UBERON:0000165,6.27e-10,29;UBERON:0000930,6.27e-10,29;UBERON:0003102,8.71e-10,99;UBERON:0003124,7.47e-09,7;UBERON:0000153,1.41e-08,62;UBERON:0007811,1.41e-08,62;UBERON:0001044,4.02e-08,6;UBERON:0003293,4.02e-08,6;UBERON:0003294,4.02e-08,6;UBERON:0010047,4.02e-08,6;UBERON:0000167,4.02e-08,6;UBERON:0000365,1.34e-07,5;UBERON:0004175,2.03e-07,25;UBERON:0003408,2.20e-07,10;UBERON:0000974,2.71e-07,10;UBERON:0000344,3.32e-07,20;UBERON:0000033,6.14e-07,56 | |||
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| |||
|short_description=p1@TRIM29 | |||
}} |
Revision as of 16:11, 10 September 2013
Short description: | p1@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TRIM29_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000475051_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | E9PJD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.82e-22 | 253 |
endo-epithelial cell | 3.10e-21 | 42 |
epithelial cell of alimentary canal | 3.81e-14 | 20 |
endodermal cell | 6.82e-14 | 58 |
general ecto-epithelial cell | 8.93e-11 | 14 |
respiratory epithelial cell | 6.42e-09 | 13 |
acinar cell | 6.75e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 4.04e-25 | 74 |
endoderm-derived structure | 5.30e-23 | 160 |
endoderm | 5.30e-23 | 160 |
presumptive endoderm | 5.30e-23 | 160 |
respiratory tract | 2.06e-17 | 54 |
digestive system | 7.57e-16 | 145 |
digestive tract | 7.57e-16 | 145 |
primitive gut | 7.57e-16 | 145 |
orifice | 6.69e-14 | 36 |
subdivision of digestive tract | 8.07e-14 | 118 |
foregut | 8.67e-14 | 87 |
segment of respiratory tract | 1.43e-13 | 47 |
upper respiratory tract | 5.59e-13 | 19 |
oral opening | 9.19e-13 | 22 |
respiratory primordium | 2.46e-12 | 38 |
endoderm of foregut | 2.46e-12 | 38 |
extraembryonic membrane | 7.01e-12 | 14 |
membranous layer | 7.01e-12 | 14 |
larynx | 1.81e-11 | 9 |
mouth | 6.27e-10 | 29 |
stomodeum | 6.27e-10 | 29 |
surface structure | 8.71e-10 | 99 |
chorion | 7.47e-09 | 7 |
anterior region of body | 1.41e-08 | 62 |
craniocervical region | 1.41e-08 | 62 |
saliva-secreting gland | 4.02e-08 | 6 |
gland of oral region | 4.02e-08 | 6 |
gland of foregut | 4.02e-08 | 6 |
oral gland | 4.02e-08 | 6 |
oral cavity | 4.02e-08 | 6 |
urothelium | 1.34e-07 | 5 |
internal genitalia | 2.03e-07 | 25 |
gland of gut | 2.20e-07 | 10 |
neck | 2.71e-07 | 10 |
mucosa | 3.32e-07 | 20 |
head | 6.14e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.19e-14 | 106 |
squamous cell carcinoma | 7.70e-12 | 14 |
cell type cancer | 1.76e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.