FFCP PHASE1:Hg19::chr14:25078866..25078900,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2999|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4710|TSSclassifier=W|UniProt=Q6XGZ0,G3V2C5|association_with_transcript=0bp_to_ENST00000382547,ENST00000557220_5end|coexpression_cluster_id=C98|description=CAGE_peak_1_at_GZMH_5end|id=chr14:25078866..25078900,-|ontology_enrichment_celltype=CL:0000738!3.75e-22!140;CL:0000791!7.64e-19!18;CL:0000789!7.64e-19!18;CL:0002420!7.64e-19!18;CL:0002419!7.64e-19!18;CL:0000790!7.64e-19!18;CL:0002087!3.17e-17!119;CL:0000625!2.48e-16!11;CL:0000037!6.49e-15!172;CL:0000566!6.49e-15!172;CL:0000084!8.46e-15!25;CL:0000827!8.46e-15!25;CL:0002031!9.01e-14!124;CL:0000988!4.88e-13!182;CL:0002032!5.77e-12!165;CL:0000837!5.77e-12!165;CL:0000838!4.29e-11!52;CL:0000542!9.94e-11!53;CL:0000051!9.94e-11!53;CL:0000766!1.34e-07!76;CL:0002057!2.93e-07!42|ontology_enrichment_celltype_v019=CL:0000791;1.13e-32;18!CL:0000789;1.13e-32;18!CL:0002419;1.13e-32;18!CL:0000625;2.17e-27;11!CL:0000084;3.50e-22;25!CL:0002087;4.29e-09;104!CL:0000623;1.00e-08;3!CL:0000767;2.04e-08;3!CL:0000226;3.90e-08;3!CL:0000842;3.90e-08;3!CL:0000542;5.05e-08;53!CL:0002619;1.65e-07;3!CL:0000094;2.52e-07;8|ontology_enrichment_celltype_v019_2=CL:0000791,1.40e-32,18;CL:0000789,1.40e-32,18;CL:0002420,1.40e-32,18;CL:0002419,1.40e-32,18;CL:0000790,1.40e-32,18;CL:0000625,2.19e-27,11;CL:0000738,5.11e-23,136;CL:0000084,4.05e-22,25;CL:0000827,4.05e-22,25;CL:0002087,1.62e-20,115;CL:0000037,2.63e-16,168;CL:0000838,1.46e-15,52;CL:0002031,1.71e-15,120;CL:0000542,3.74e-15,53;CL:0000051,3.74e-15,53;CL:0000988,7.17e-15,177;CL:0002032,1.84e-13,161;CL:0000837,1.84e-13,161;CL:0000623,1.01e-08,3;CL:0000825,1.01e-08,3;CL:0000767,2.00e-08,3;CL:0000226,3.82e-08,3;CL:0000842,3.82e-08,3;CL:0002619,1.80e-07,3;CL:0000094,2.11e-07,8;CL:0000766,2.98e-07,72|ontology_enrichment_development_v019=CL:0000790;1.13e-32;18!CL:0000051;5.05e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.31e-33!115;UBERON:0000178!1.81e-12!15;UBERON:0000179!1.81e-12!15;UBERON:0000463!1.81e-12!15;UBERON:0002390!4.61e-12!102;UBERON:0003061!4.61e-12!102;UBERON:0002193!2.33e-11!112|ontology_enrichment_uberon_v019=UBERON:0000178;1.21e-21;15!UBERON:0000179;1.21e-21;15!UBERON:0000463;1.21e-21;15!UBERON:0002390;1.47e-09;32!UBERON:0002193;2.10e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.19e-21,15;UBERON:0000179,1.19e-21,15;UBERON:0000463,1.19e-21,15;UBERON:0002193,4.95e-13,108;UBERON:0002390,5.45e-13,98;UBERON:0003061,5.45e-13,98;UBERON:0007023,3.13e-10,114|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.4975416514509,309.366494866353,25.2350281005204,0,0,0,0,0,0.293600439334847,22.713811749807,27.6751337508796,25.1732610030388,3.58264758783879,9.06902264853143,2.06060454107349,1.01778767145695,0.377875943688809,0,2.09186133215116,0.822335776043652,0,1.43846196161075,0.256160706529101,0,2.75796544589295,0.645484683583826,0,1.69418105588344,0,0,3.97909060082173,0,0,0,0.199463657621632,0,3.48251086354301,0,0.622822248995575,1.50749199154046,0,0.217188844705117,2.42159801053347,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,1.63841583378639,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0,0,0,0,0,25.2228853341691,0,1.180258620683,21.2225811884549,4.5232329779892,0,0,0,0,0.334231370655521,0,0,0,0.640456598628376,0.130059347559878,0.164437904603676,2.48715016007264,0,0,0,1.04535523804977,3.96582699441482,75.1112167459766,24.0539211837841,23.5308313578138,115.002114570999,147.795944025407,203.396737511952,149.219943006073,163.438902444192,161.160637252526,190.132133391346,267.687726996261,151.003450675325,161.533878253238,95.7289309665301,0,0,0,0,0,0,0,0,0,0,0.263504357079378,2.88153966094968,0,0,0,0,0.26591592103773,0.476981248610684,2.85997455390064,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,0,0,0,0,0,0,1.41867352879343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59549090373462,164.717715528811,169.267646264721,117.690564268529,0.254094624222463,0,0,0,0,0.749007023947182,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.5678277355729,21.5714200818617,82.8205848554728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0.511359764496605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0982349809975,0,0,0,0,0,1.47775344708365,0,0,0,0,2.01090682660736,0,1.22386941009813,0,0,0,0,29.4319613354658,36.702585942834,35.3181256047981,55.7462354571226,46.4839368587399,27.8843523812868,31.3218233598107,54.7256371643047,0,0,0,0,0,0,0.478278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2999 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4710 | |||
|TSSclassifier=W | |||
|UniProt=Q6XGZ0,G3V2C5 | |||
|association_with_transcript=0bp_to_ENST00000382547,ENST00000557220_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_1_at_GZMH_5end | |||
|id=chr14:25078866..25078900,- | |||
|ontology_enrichment_celltype=CL:0000738!3.75e-22!140;CL:0000791!7.64e-19!18;CL:0000789!7.64e-19!18;CL:0002420!7.64e-19!18;CL:0002419!7.64e-19!18;CL:0000790!7.64e-19!18;CL:0002087!3.17e-17!119;CL:0000625!2.48e-16!11;CL:0000037!6.49e-15!172;CL:0000566!6.49e-15!172;CL:0000084!8.46e-15!25;CL:0000827!8.46e-15!25;CL:0002031!9.01e-14!124;CL:0000988!4.88e-13!182;CL:0002032!5.77e-12!165;CL:0000837!5.77e-12!165;CL:0000838!4.29e-11!52;CL:0000542!9.94e-11!53;CL:0000051!9.94e-11!53;CL:0000766!1.34e-07!76;CL:0002057!2.93e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.13e-32;18!CL:0000789;1.13e-32;18!CL:0002419;1.13e-32;18!CL:0000625;2.17e-27;11!CL:0000084;3.50e-22;25!CL:0002087;4.29e-09;104!CL:0000623;1.00e-08;3!CL:0000767;2.04e-08;3!CL:0000226;3.90e-08;3!CL:0000842;3.90e-08;3!CL:0000542;5.05e-08;53!CL:0002619;1.65e-07;3!CL:0000094;2.52e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.40e-32,18;CL:0000789,1.40e-32,18;CL:0002420,1.40e-32,18;CL:0002419,1.40e-32,18;CL:0000790,1.40e-32,18;CL:0000625,2.19e-27,11;CL:0000738,5.11e-23,136;CL:0000084,4.05e-22,25;CL:0000827,4.05e-22,25;CL:0002087,1.62e-20,115;CL:0000037,2.63e-16,168;CL:0000838,1.46e-15,52;CL:0002031,1.71e-15,120;CL:0000542,3.74e-15,53;CL:0000051,3.74e-15,53;CL:0000988,7.17e-15,177;CL:0002032,1.84e-13,161;CL:0000837,1.84e-13,161;CL:0000623,1.01e-08,3;CL:0000825,1.01e-08,3;CL:0000767,2.00e-08,3;CL:0000226,3.82e-08,3;CL:0000842,3.82e-08,3;CL:0002619,1.80e-07,3;CL:0000094,2.11e-07,8;CL:0000766,2.98e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000790;1.13e-32;18!CL:0000051;5.05e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.31e-33!115;UBERON:0000178!1.81e-12!15;UBERON:0000179!1.81e-12!15;UBERON:0000463!1.81e-12!15;UBERON:0002390!4.61e-12!102;UBERON:0003061!4.61e-12!102;UBERON:0002193!2.33e-11!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.21e-21;15!UBERON:0000179;1.21e-21;15!UBERON:0000463;1.21e-21;15!UBERON:0002390;1.47e-09;32!UBERON:0002193;2.10e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.19e-21,15;UBERON:0000179,1.19e-21,15;UBERON:0000463,1.19e-21,15;UBERON:0002193,4.95e-13,108;UBERON:0002390,5.45e-13,98;UBERON:0003061,5.45e-13,98;UBERON:0007023,3.13e-10,114 | |||
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|short_description=p1@GZMH | |||
}} |
Revision as of 04:13, 11 September 2013
Short description: | p1@GZMH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GZMH_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | 0bp_to_ENST00000382547, ENST00000557220_5end |
EntrezGene: | GZMH |
HGNC: | 4710 |
UniProt: | Q6XGZ0G3V2C5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.40e-32 | 18 |
alpha-beta T cell | 1.40e-32 | 18 |
immature T cell | 1.40e-32 | 18 |
mature T cell | 1.40e-32 | 18 |
immature alpha-beta T cell | 1.40e-32 | 18 |
CD8-positive, alpha-beta T cell | 2.19e-27 | 11 |
leukocyte | 5.11e-23 | 136 |
T cell | 4.05e-22 | 25 |
pro-T cell | 4.05e-22 | 25 |
nongranular leukocyte | 1.62e-20 | 115 |
hematopoietic stem cell | 2.63e-16 | 168 |
lymphoid lineage restricted progenitor cell | 1.46e-15 | 52 |
hematopoietic lineage restricted progenitor cell | 1.71e-15 | 120 |
lymphocyte | 3.74e-15 | 53 |
common lymphoid progenitor | 3.74e-15 | 53 |
hematopoietic cell | 7.17e-15 | 177 |
hematopoietic oligopotent progenitor cell | 1.84e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.84e-13 | 161 |
natural killer cell | 1.01e-08 | 3 |
pro-NK cell | 1.01e-08 | 3 |
basophil | 2.00e-08 | 3 |
single nucleate cell | 3.82e-08 | 3 |
mononuclear cell | 3.82e-08 | 3 |
adult endothelial progenitor cell | 1.80e-07 | 3 |
granulocyte | 2.11e-07 | 8 |
myeloid leukocyte | 2.98e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
blood | 1.19e-21 | 15 |
haemolymphatic fluid | 1.19e-21 | 15 |
organism substance | 1.19e-21 | 15 |
hemolymphoid system | 4.95e-13 | 108 |
hematopoietic system | 5.45e-13 | 98 |
blood island | 5.45e-13 | 98 |
adult organism | 3.13e-10 | 114 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.