FFCP PHASE1:Hg19::chr17:7750515..7750528,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23135|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=29012|TSSclassifier=N|UniProt=|association_with_transcript=-335bp_to_uc002gix.2_5end|coexpression_cluster_id=C17|description=CAGE_peak_9_at_KDM6B_5end|id=chr17:7750515..7750528,+|ontology_enrichment_celltype=CL:0000860!1.28e-22!45;CL:0002057!1.37e-21!42;CL:0000766!9.76e-16!76;CL:0000557!1.37e-14!71;CL:0000839!5.65e-14!70;CL:0002009!2.70e-13!65;CL:0002194!4.10e-13!63;CL:0000576!4.10e-13!63;CL:0000040!4.10e-13!63;CL:0000559!4.10e-13!63;CL:0000738!2.50e-11!140;CL:0002087!3.53e-10!119;CL:0002031!3.82e-10!124;CL:0000763!1.02e-09!112;CL:0000049!1.02e-09!112;CL:0000988!1.87e-08!182;CL:0000037!2.26e-08!172;CL:0000566!2.26e-08!172;CL:0002032!6.31e-08!165;CL:0000837!6.31e-08!165|ontology_enrichment_celltype_v019=CL:0000860;2.16e-74;33!CL:0002057;2.16e-74;33!CL:0000473;1.02e-51;39!CL:0000234;1.02e-51;39!CL:0000576;1.26e-34;48!CL:0000766;1.29e-28;69!CL:0000775;8.13e-23;3!CL:0000763;4.62e-13;100!CL:0000738;1.24e-09;136!CL:0002087;1.81e-09;104!CL:0000094;6.92e-09;8|ontology_enrichment_celltype_v019_2=CL:0000860,5.16e-64,42;CL:0002057,5.16e-64,42;CL:0000473,1.46e-55,48;CL:0000234,1.46e-55,48;CL:0000766,1.90e-52,72;CL:0002194,1.00e-43,59;CL:0000576,1.00e-43,59;CL:0000040,1.00e-43,59;CL:0000559,1.00e-43,59;CL:0000839,3.87e-43,66;CL:0000557,1.90e-42,67;CL:0002009,3.39e-42,61;CL:0000763,9.05e-34,108;CL:0000049,9.05e-34,108;CL:0000738,5.17e-26,136;CL:0000775,6.06e-23,3;CL:0002031,3.62e-22,120;CL:0002032,2.40e-21,161;CL:0000837,2.40e-21,161;CL:0002087,8.01e-21,115;CL:0000037,2.77e-20,168;CL:0000988,4.83e-19,177;CL:0000094,6.22e-09,8;CL:0000134,2.35e-07,354;CL:0002320,3.99e-07,361|ontology_enrichment_development_v019=CL:0002057;4.89e-46;42!CL:0000049;5.28e-10;108!UBERON:0000358;1.84e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.47e-15!102;UBERON:0003061!4.47e-15!102;UBERON:0002193!4.05e-13!112;UBERON:0001474!7.71e-12!86;UBERON:0002371!3.36e-11!80;UBERON:0004765!9.22e-09!101;UBERON:0001434!9.22e-09!101;UBERON:0002405!9.28e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.83e-37,76;UBERON:0001474,4.35e-34,82;UBERON:0002390,4.68e-34,98;UBERON:0003061,4.68e-34,98;UBERON:0004765,9.39e-31,90;UBERON:0002193,1.47e-30,108;UBERON:0002405,1.19e-29,93;UBERON:0001434,2.51e-27,100;UBERON:0003081,6.11e-16,203;UBERON:0002204,7.25e-15,167;UBERON:0000926,9.79e-09,315;UBERON:0004120,9.79e-09,315;UBERON:0006603,9.79e-09,315;UBERON:0002384,8.20e-07,371|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.534893840235659,0.246301768349837,0.314843125254717,0.393364276848904,0,0,0,0,0.369754010166788,0,0,0,0.553995408531877,0.601633342410425,0.651032612147555,0,0,0.257575567634187,0.872389432677388,0.377875943688809,0.485168122375632,1.62700325833979,2.05583944010913,0.929119112685311,4.02769349251011,2.56160706529101,0.709446689665756,4.82643953031266,1.29096936716765,0,2.82363509313907,2.45615535052061,0.449446968890169,5.50951006267625,1.60464513538047,3.83602275479425,0.989553900560148,0.797854630486527,1.27867425159808,6.09439401120026,3.40431134814684,6.22822248995575,3.01498398308092,2.60741459210101,0.434377689410233,4.84319602106695,1.84138817993782,1.26584954976354,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.196709770113833,0,0.616804496998528,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0,0,0.323292113637624,0,0,0.169560592310488,0,0,0,0,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.185176890317059,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,27.5891413221728,0,0.414656231081544,0.144119953416961,0.75745460055828,0,0.763976851116555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0.773288812777695,0,0.637938751653163,6.74106321552464,8.97484377612075,2.90090859405225,0.24538298343828,0.500170521059677,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0.620304078368662,0.862856803274467,0.960548020230999,0,0,0,0,0,0.561320188866147,0,0,0.160853921143607,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23135 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29012 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-335bp_to_uc002gix.2_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_9_at_KDM6B_5end | |||
|id=chr17:7750515..7750528,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.28e-22!45;CL:0002057!1.37e-21!42;CL:0000766!9.76e-16!76;CL:0000557!1.37e-14!71;CL:0000839!5.65e-14!70;CL:0002009!2.70e-13!65;CL:0002194!4.10e-13!63;CL:0000576!4.10e-13!63;CL:0000040!4.10e-13!63;CL:0000559!4.10e-13!63;CL:0000738!2.50e-11!140;CL:0002087!3.53e-10!119;CL:0002031!3.82e-10!124;CL:0000763!1.02e-09!112;CL:0000049!1.02e-09!112;CL:0000988!1.87e-08!182;CL:0000037!2.26e-08!172;CL:0000566!2.26e-08!172;CL:0002032!6.31e-08!165;CL:0000837!6.31e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.16e-74;33!CL:0002057;2.16e-74;33!CL:0000473;1.02e-51;39!CL:0000234;1.02e-51;39!CL:0000576;1.26e-34;48!CL:0000766;1.29e-28;69!CL:0000775;8.13e-23;3!CL:0000763;4.62e-13;100!CL:0000738;1.24e-09;136!CL:0002087;1.81e-09;104!CL:0000094;6.92e-09;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.16e-64,42;CL:0002057,5.16e-64,42;CL:0000473,1.46e-55,48;CL:0000234,1.46e-55,48;CL:0000766,1.90e-52,72;CL:0002194,1.00e-43,59;CL:0000576,1.00e-43,59;CL:0000040,1.00e-43,59;CL:0000559,1.00e-43,59;CL:0000839,3.87e-43,66;CL:0000557,1.90e-42,67;CL:0002009,3.39e-42,61;CL:0000763,9.05e-34,108;CL:0000049,9.05e-34,108;CL:0000738,5.17e-26,136;CL:0000775,6.06e-23,3;CL:0002031,3.62e-22,120;CL:0002032,2.40e-21,161;CL:0000837,2.40e-21,161;CL:0002087,8.01e-21,115;CL:0000037,2.77e-20,168;CL:0000988,4.83e-19,177;CL:0000094,6.22e-09,8;CL:0000134,2.35e-07,354;CL:0002320,3.99e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;4.89e-46;42!CL:0000049;5.28e-10;108!UBERON:0000358;1.84e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.47e-15!102;UBERON:0003061!4.47e-15!102;UBERON:0002193!4.05e-13!112;UBERON:0001474!7.71e-12!86;UBERON:0002371!3.36e-11!80;UBERON:0004765!9.22e-09!101;UBERON:0001434!9.22e-09!101;UBERON:0002405!9.28e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.83e-37,76;UBERON:0001474,4.35e-34,82;UBERON:0002390,4.68e-34,98;UBERON:0003061,4.68e-34,98;UBERON:0004765,9.39e-31,90;UBERON:0002193,1.47e-30,108;UBERON:0002405,1.19e-29,93;UBERON:0001434,2.51e-27,100;UBERON:0003081,6.11e-16,203;UBERON:0002204,7.25e-15,167;UBERON:0000926,9.79e-09,315;UBERON:0004120,9.79e-09,315;UBERON:0006603,9.79e-09,315;UBERON:0002384,8.20e-07,371 | |||
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| |||
|short_description=p9@KDM6B | |||
}} |
Revision as of 16:15, 11 September 2013
Short description: | p9@KDM6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_KDM6B_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -335bp_to_uc002gix.2_5end |
EntrezGene: | KDM6B |
HGNC: | 29012 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.16e-64 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.16e-64 | 42 |
defensive cell | 1.46e-55 | 48 |
phagocyte | 1.46e-55 | 48 |
myeloid leukocyte | 1.90e-52 | 72 |
monopoietic cell | 1.00e-43 | 59 |
monocyte | 1.00e-43 | 59 |
monoblast | 1.00e-43 | 59 |
promonocyte | 1.00e-43 | 59 |
myeloid lineage restricted progenitor cell | 3.87e-43 | 66 |
granulocyte monocyte progenitor cell | 1.90e-42 | 67 |
macrophage dendritic cell progenitor | 3.39e-42 | 61 |
myeloid cell | 9.05e-34 | 108 |
common myeloid progenitor | 9.05e-34 | 108 |
leukocyte | 5.17e-26 | 136 |
neutrophil | 6.06e-23 | 3 |
hematopoietic lineage restricted progenitor cell | 3.62e-22 | 120 |
hematopoietic oligopotent progenitor cell | 2.40e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.40e-21 | 161 |
nongranular leukocyte | 8.01e-21 | 115 |
hematopoietic stem cell | 2.77e-20 | 168 |
hematopoietic cell | 4.83e-19 | 177 |
granulocyte | 6.22e-09 | 8 |
mesenchymal cell | 2.35e-07 | 354 |
connective tissue cell | 3.99e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.83e-37 | 76 |
bone element | 4.35e-34 | 82 |
hematopoietic system | 4.68e-34 | 98 |
blood island | 4.68e-34 | 98 |
skeletal element | 9.39e-31 | 90 |
hemolymphoid system | 1.47e-30 | 108 |
immune system | 1.19e-29 | 93 |
skeletal system | 2.51e-27 | 100 |
lateral plate mesoderm | 6.11e-16 | 203 |
musculoskeletal system | 7.25e-15 | 167 |
mesoderm | 9.79e-09 | 315 |
mesoderm-derived structure | 9.79e-09 | 315 |
presumptive mesoderm | 9.79e-09 | 315 |
connective tissue | 8.20e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.