FFCP PHASE1:Hg19::chr19:44303031..44303053,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=284348|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26397|TSSclassifier=S|UniProt=|association_with_transcript=-12bp_to_BC044237_5end|coexpression_cluster_id=C1|description=CAGE_peak_6_at_LYPD5_5end|id=chr19:44303031..44303053,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002567;2.89e-12;3|ontology_enrichment_celltype_v019_2=CL:0002567,3.24e-12,3|ontology_enrichment_development_v019=UBERON:0009117;2.49e-14;10!UBERON:0005564;2.49e-14;10!UBERON:0006215;2.89e-12;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.85e-21!115;UBERON:0001049!1.41e-20!57;UBERON:0005068!1.41e-20!57;UBERON:0006241!1.41e-20!57;UBERON:0007135!1.41e-20!57;UBERON:0002616!7.16e-18!59;UBERON:0000955!4.38e-17!69;UBERON:0006238!4.38e-17!69;UBERON:0004733!9.07e-17!12;UBERON:0002028!9.07e-17!12;UBERON:0007277!9.07e-17!12;UBERON:0005743!3.11e-16!86;UBERON:0001017!4.58e-16!82;UBERON:0003076!4.81e-16!15;UBERON:0003057!4.81e-16!15;UBERON:0004732!2.51e-15!13;UBERON:0002680!3.06e-14!9;UBERON:0001895!3.06e-14!9;UBERON:0010092!3.06e-14!9;UBERON:0000073!5.17e-14!94;UBERON:0001016!5.17e-14!94;UBERON:0003075!7.90e-14!86;UBERON:0007284!7.90e-14!86;UBERON:0002346!6.54e-13!90;UBERON:0000033!6.79e-11!123;UBERON:0000153!4.80e-10!129;UBERON:0007811!4.80e-10!129;UBERON:0002780!1.69e-09!41;UBERON:0001890!1.69e-09!41;UBERON:0006240!1.69e-09!41;UBERON:0003080!3.38e-09!42;UBERON:0000988!3.91e-09!3;UBERON:0002020!4.91e-09!34;UBERON:0003528!4.91e-09!34;UBERON:0001893!8.23e-09!34;UBERON:0004121!1.26e-08!169;UBERON:0002298!2.91e-08!8;UBERON:0000924!3.03e-08!173;UBERON:0006601!3.03e-08!173;UBERON:0001869!4.13e-08!32;UBERON:0002791!1.23e-07!33;UBERON:0002037!1.82e-07!6;UBERON:0006215!1.82e-07!6;UBERON:0000200!3.26e-07!6;UBERON:0002619!5.30e-07!22|ontology_enrichment_uberon_v019=UBERON:0000473;1.22e-17;8!UBERON:0002680;1.41e-15;9!UBERON:0001895;1.41e-15;9!UBERON:0003135;4.00e-13;11!UBERON:0000988;2.89e-12;3!UBERON:0004733;6.00e-12;12!UBERON:0002028;6.00e-12;12!UBERON:0004732;4.15e-11;13!UBERON:0000991;2.44e-07;21!UBERON:0003101;4.79e-07;22!UBERON:0000079;4.79e-07;22!UBERON:0002037;8.97e-07;6!UBERON:0002298;8.97e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.22e-17,8;UBERON:0002680,1.31e-15,9;UBERON:0001895,1.31e-15,9;UBERON:0010092,1.31e-15,9;UBERON:0003135,4.00e-13,11;UBERON:0000988,2.89e-12,3;UBERON:0004733,5.67e-12,12;UBERON:0002028,5.67e-12,12;UBERON:0007277,5.67e-12,12;UBERON:0004732,3.94e-11,13;UBERON:0003076,8.85e-10,15;UBERON:0003057,8.85e-10,15;UBERON:0000991,2.44e-07,21;UBERON:0009196,2.44e-07,21;UBERON:0009117,2.44e-07,21;UBERON:0005564,2.44e-07,21;UBERON:0004176,4.79e-07,22;UBERON:0003101,4.79e-07,22;UBERON:0000079,4.79e-07,22;UBERON:0002037,8.48e-07,6;UBERON:0006215,8.48e-07,6;UBERON:0002298,8.97e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0.918251677112708,0,0,0,0,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75056058545197,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0.331737779793674,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.52893040697076,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0.110929051536852,0.372578417648301,0.138348634936231,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207471757392654,0.161475645631851,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,1.2914249265598,0.328863867814245,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0,0,0,0,0.0802413666891683,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,4.77405798774908,8.03892390468535,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@LYPD5}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=284348 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26397 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_BC044237_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_LYPD5_5end | |||
|id=chr19:44303031..44303053,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002567;2.89e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,3.24e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.49e-14;10!UBERON:0005564;2.49e-14;10!UBERON:0006215;2.89e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.85e-21!115;UBERON:0001049!1.41e-20!57;UBERON:0005068!1.41e-20!57;UBERON:0006241!1.41e-20!57;UBERON:0007135!1.41e-20!57;UBERON:0002616!7.16e-18!59;UBERON:0000955!4.38e-17!69;UBERON:0006238!4.38e-17!69;UBERON:0004733!9.07e-17!12;UBERON:0002028!9.07e-17!12;UBERON:0007277!9.07e-17!12;UBERON:0005743!3.11e-16!86;UBERON:0001017!4.58e-16!82;UBERON:0003076!4.81e-16!15;UBERON:0003057!4.81e-16!15;UBERON:0004732!2.51e-15!13;UBERON:0002680!3.06e-14!9;UBERON:0001895!3.06e-14!9;UBERON:0010092!3.06e-14!9;UBERON:0000073!5.17e-14!94;UBERON:0001016!5.17e-14!94;UBERON:0003075!7.90e-14!86;UBERON:0007284!7.90e-14!86;UBERON:0002346!6.54e-13!90;UBERON:0000033!6.79e-11!123;UBERON:0000153!4.80e-10!129;UBERON:0007811!4.80e-10!129;UBERON:0002780!1.69e-09!41;UBERON:0001890!1.69e-09!41;UBERON:0006240!1.69e-09!41;UBERON:0003080!3.38e-09!42;UBERON:0000988!3.91e-09!3;UBERON:0002020!4.91e-09!34;UBERON:0003528!4.91e-09!34;UBERON:0001893!8.23e-09!34;UBERON:0004121!1.26e-08!169;UBERON:0002298!2.91e-08!8;UBERON:0000924!3.03e-08!173;UBERON:0006601!3.03e-08!173;UBERON:0001869!4.13e-08!32;UBERON:0002791!1.23e-07!33;UBERON:0002037!1.82e-07!6;UBERON:0006215!1.82e-07!6;UBERON:0000200!3.26e-07!6;UBERON:0002619!5.30e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.22e-17;8!UBERON:0002680;1.41e-15;9!UBERON:0001895;1.41e-15;9!UBERON:0003135;4.00e-13;11!UBERON:0000988;2.89e-12;3!UBERON:0004733;6.00e-12;12!UBERON:0002028;6.00e-12;12!UBERON:0004732;4.15e-11;13!UBERON:0000991;2.44e-07;21!UBERON:0003101;4.79e-07;22!UBERON:0000079;4.79e-07;22!UBERON:0002037;8.97e-07;6!UBERON:0002298;8.97e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.22e-17,8;UBERON:0002680,1.31e-15,9;UBERON:0001895,1.31e-15,9;UBERON:0010092,1.31e-15,9;UBERON:0003135,4.00e-13,11;UBERON:0000988,2.89e-12,3;UBERON:0004733,5.67e-12,12;UBERON:0002028,5.67e-12,12;UBERON:0007277,5.67e-12,12;UBERON:0004732,3.94e-11,13;UBERON:0003076,8.85e-10,15;UBERON:0003057,8.85e-10,15;UBERON:0000991,2.44e-07,21;UBERON:0009196,2.44e-07,21;UBERON:0009117,2.44e-07,21;UBERON:0005564,2.44e-07,21;UBERON:0004176,4.79e-07,22;UBERON:0003101,4.79e-07,22;UBERON:0000079,4.79e-07,22;UBERON:0002037,8.48e-07,6;UBERON:0006215,8.48e-07,6;UBERON:0002298,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0.918251677112708,0,0,0,0,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75056058545197,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0.331737779793674,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.52893040697076,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0.110929051536852,0.372578417648301,0.138348634936231,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207471757392654,0.161475645631851,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,1.2914249265598,0.328863867814245,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0,0,0,0,0.0802413666891683,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,4.77405798774908,8.03892390468535,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@LYPD5 | |||
}} |
Revision as of 21:03, 11 September 2013
Short description: | p6@LYPD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LYPD5_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -12bp_to_BC044237_5end |
EntrezGene: | LYPD5 |
HGNC: | 26397 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.22e-17 | 8 |
regional part of metencephalon | 1.31e-15 | 9 |
metencephalon | 1.31e-15 | 9 |
future metencephalon | 1.31e-15 | 9 |
male reproductive organ | 4.00e-13 | 11 |
pons | 2.89e-12 | 3 |
segmental subdivision of hindbrain | 5.67e-12 | 12 |
hindbrain | 5.67e-12 | 12 |
presumptive hindbrain | 5.67e-12 | 12 |
segmental subdivision of nervous system | 3.94e-11 | 13 |
posterior neural tube | 8.85e-10 | 15 |
chordal neural plate | 8.85e-10 | 15 |
gonad | 2.44e-07 | 21 |
indifferent external genitalia | 2.44e-07 | 21 |
indifferent gonad | 2.44e-07 | 21 |
gonad primordium | 2.44e-07 | 21 |
external genitalia | 4.79e-07 | 22 |
male organism | 4.79e-07 | 22 |
male reproductive system | 4.79e-07 | 22 |
cerebellum | 8.48e-07 | 6 |
rhombic lip | 8.48e-07 | 6 |
brainstem | 8.97e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.