FFCP PHASE1:Hg19::chr2:101179263..101179284,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79031|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28860|TSSclassifier=S|UniProt=Q9H2J4|association_with_transcript=111bp_to_ENST00000264254_5end|coexpression_cluster_id=C61|description=CAGE_peak_3_at_PDCL3_5end|id=chr2:101179263..101179284,+|ontology_enrichment_celltype=CL:0000860!2.93e-19!45;CL:0002057!3.62e-19!42;CL:0000738!3.25e-18!140;CL:0002087!4.06e-17!119;CL:0002031!7.21e-16!124;CL:0000037!1.21e-13!172;CL:0000566!1.21e-13!172;CL:0002032!1.50e-13!165;CL:0000837!1.50e-13!165;CL:0000766!5.68e-13!76;CL:0002194!9.84e-13!63;CL:0000576!9.84e-13!63;CL:0000040!9.84e-13!63;CL:0000559!9.84e-13!63;CL:0000839!1.38e-12!70;CL:0002009!1.70e-12!65;CL:0000557!2.50e-12!71;CL:0000988!6.48e-12!182;CL:0000763!2.96e-09!112;CL:0000049!2.96e-09!112|ontology_enrichment_celltype_v019=CL:0000860;2.36e-23;33!CL:0002057;2.36e-23;33!CL:0000473;1.45e-16;39!CL:0000234;1.45e-16;39!CL:0000576;1.13e-13;48!CL:0000766;1.69e-09;69!CL:0002087;1.12e-07;104!CL:0000738;6.34e-07;136|ontology_enrichment_celltype_v019_2=CL:0000738,4.51e-27,136;CL:0000860,1.25e-26,42;CL:0002057,1.25e-26,42;CL:0000473,3.80e-23,48;CL:0000234,3.80e-23,48;CL:0002031,8.46e-23,120;CL:0002087,1.04e-22,115;CL:0002032,1.35e-20,161;CL:0000837,1.35e-20,161;CL:0000766,2.15e-20,72;CL:0000037,2.17e-20,168;CL:0000557,5.92e-19,67;CL:0000988,7.90e-19,177;CL:0002009,1.67e-18,61;CL:0002194,2.71e-18,59;CL:0000576,2.71e-18,59;CL:0000040,2.71e-18,59;CL:0000559,2.71e-18,59;CL:0000839,3.03e-18,66;CL:0000763,2.96e-15,108;CL:0000049,2.96e-15,108|ontology_enrichment_development_v019=CL:0002057;7.97e-19;42|ontology_enrichment_disease=DOID:305!3.28e-10!106;DOID:0050687!5.65e-07!143|ontology_enrichment_disease_v019=DOID:1749;1.33e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,1.23e-08,14|ontology_enrichment_uberon=UBERON:0002371!2.40e-08!80;UBERON:0001474!5.27e-08!86;UBERON:0002390!5.35e-07!102;UBERON:0003061!5.35e-07!102|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.88e-15,76;UBERON:0001474,7.47e-14,82;UBERON:0002405,4.24e-13,93;UBERON:0002390,1.49e-12,98;UBERON:0003061,1.49e-12,98;UBERON:0004765,3.08e-12,90;UBERON:0002193,1.89e-11,108;UBERON:0001434,8.87e-10,100|phase1_expression=0.908391896352783,0.428201047781966,0.563817616383885,2.00146596706261,0,0,0,0,0,0.737201809504527,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0.246242116153576,0.408001382488506,0.313454721478088,0.85870796139317,0.821246550437305,0.502170558379211,0.0764134057479513,0.821005894499457,0.157421562627358,5.90046415273356,2.68680578668049,2.16742572642506,0,0.30120591877825,0,1.62681121218633,1.42169232487422,0.293600439334847,1.10799081706375,0.802177789880567,0.434021741431704,0.223915474239924,0,0,2.18097358169347,1.51150377475524,1.4555043671269,4.18372266430232,2.87817521615278,4.33588919253145,2.3015391385772,1.5369642391746,1.6553756092201,4.13694816883942,4.51839278508678,2.70852973188684,2.44715041405386,2.72906150057846,7.41587498668779,6.42776173978895,6.09765151444578,4.47535988059329,1.64925650093358,0.997318288108159,1.70489900213078,2.90209238628584,2.8369261234557,3.73693349397345,2.26123798731069,2.60741459210101,3.9093992046921,1.81619850790011,3.68277635987565,3.16462387440884,1.05627643155971,0.425208599930087,0.838634582033504,0.673971786878971,0.600707571366025,0.48217676009124,2.28010194992999,2.18808344918999,2.55729815270488,0,0.546138611262131,0,1.28019066769952,0.800791974072025,0.574752439954483,2.64417949113945,0,1.70763890732835,1.17447437874188,0.764546456250458,0,1.68152568894461,0,0.590129310341499,1.57204305099666,2.05601498999509,1.33749196312542,0.651844533267181,0.946895611469467,0,1.11410456885174,2.3568472597987,1.77227115666897,1.89562704635511,1.28091319725675,0.780356085359269,0.493313713811028,1.10540007114339,0,0,0.267540828089713,0,1.35971211237079,0.766440987203842,0.68725489096526,0.253019692019503,0,0,0,0,0.255973222308837,0,1.18388626022008,0.821127996921047,1.41124720257313,1.60464117470104,1.30341963494519,0,0,0.255725123687061,0,0.50133791063589,0.144846518960824,0,1.45990461090791,0.283604451492204,0,0.263504357079378,0.261958150995425,0.364295288292542,0,0.324547393654683,1.91542711029194,1.19662164466979,0.953962497221368,0,0.74291500265913,0.39752481473341,0,0.347140501607594,1.13061588384802,0,0,0,0.258416759169329,0,1.00416183829401,0,0,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0.183201743930407,1.31780417436063,0,0.436094052142534,0,0.379891534993739,0.132409180813219,0,0.709336764396714,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0,0.245668634623536,0.516628905878827,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0.30648779579902,0,0.340296549480063,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0.168776332241266,0.487185025805993,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.10075209822764,0.169560592310488,0.773043412653187,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79031 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28860 | |||
|TSSclassifier=S | |||
|UniProt=Q9H2J4 | |||
|association_with_transcript=111bp_to_ENST00000264254_5end | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_3_at_PDCL3_5end | |||
|id=chr2:101179263..101179284,+ | |||
|ontology_enrichment_celltype=CL:0000860!2.93e-19!45;CL:0002057!3.62e-19!42;CL:0000738!3.25e-18!140;CL:0002087!4.06e-17!119;CL:0002031!7.21e-16!124;CL:0000037!1.21e-13!172;CL:0000566!1.21e-13!172;CL:0002032!1.50e-13!165;CL:0000837!1.50e-13!165;CL:0000766!5.68e-13!76;CL:0002194!9.84e-13!63;CL:0000576!9.84e-13!63;CL:0000040!9.84e-13!63;CL:0000559!9.84e-13!63;CL:0000839!1.38e-12!70;CL:0002009!1.70e-12!65;CL:0000557!2.50e-12!71;CL:0000988!6.48e-12!182;CL:0000763!2.96e-09!112;CL:0000049!2.96e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.36e-23;33!CL:0002057;2.36e-23;33!CL:0000473;1.45e-16;39!CL:0000234;1.45e-16;39!CL:0000576;1.13e-13;48!CL:0000766;1.69e-09;69!CL:0002087;1.12e-07;104!CL:0000738;6.34e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.51e-27,136;CL:0000860,1.25e-26,42;CL:0002057,1.25e-26,42;CL:0000473,3.80e-23,48;CL:0000234,3.80e-23,48;CL:0002031,8.46e-23,120;CL:0002087,1.04e-22,115;CL:0002032,1.35e-20,161;CL:0000837,1.35e-20,161;CL:0000766,2.15e-20,72;CL:0000037,2.17e-20,168;CL:0000557,5.92e-19,67;CL:0000988,7.90e-19,177;CL:0002009,1.67e-18,61;CL:0002194,2.71e-18,59;CL:0000576,2.71e-18,59;CL:0000040,2.71e-18,59;CL:0000559,2.71e-18,59;CL:0000839,3.03e-18,66;CL:0000763,2.96e-15,108;CL:0000049,2.96e-15,108 | |||
|ontology_enrichment_development_v019=CL:0002057;7.97e-19;42 | |||
|ontology_enrichment_disease=DOID:305!3.28e-10!106;DOID:0050687!5.65e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.33e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.23e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.40e-08!80;UBERON:0001474!5.27e-08!86;UBERON:0002390!5.35e-07!102;UBERON:0003061!5.35e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.88e-15,76;UBERON:0001474,7.47e-14,82;UBERON:0002405,4.24e-13,93;UBERON:0002390,1.49e-12,98;UBERON:0003061,1.49e-12,98;UBERON:0004765,3.08e-12,90;UBERON:0002193,1.89e-11,108;UBERON:0001434,8.87e-10,100 | |||
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| |||
|short_description=p3@PDCL3 | |||
}} |
Revision as of 12:40, 12 September 2013
Short description: | p3@PDCL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PDCL3_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 111bp_to_ENST00000264254_5end |
EntrezGene: | PDCL3 |
HGNC: | 28860 |
UniProt: | Q9H2J4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.51e-27 | 136 |
classical monocyte | 1.25e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.25e-26 | 42 |
defensive cell | 3.80e-23 | 48 |
phagocyte | 3.80e-23 | 48 |
hematopoietic lineage restricted progenitor cell | 8.46e-23 | 120 |
nongranular leukocyte | 1.04e-22 | 115 |
hematopoietic oligopotent progenitor cell | 1.35e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.35e-20 | 161 |
myeloid leukocyte | 2.15e-20 | 72 |
hematopoietic stem cell | 2.17e-20 | 168 |
granulocyte monocyte progenitor cell | 5.92e-19 | 67 |
hematopoietic cell | 7.90e-19 | 177 |
macrophage dendritic cell progenitor | 1.67e-18 | 61 |
monopoietic cell | 2.71e-18 | 59 |
monocyte | 2.71e-18 | 59 |
monoblast | 2.71e-18 | 59 |
promonocyte | 2.71e-18 | 59 |
myeloid lineage restricted progenitor cell | 3.03e-18 | 66 |
myeloid cell | 2.96e-15 | 108 |
common myeloid progenitor | 2.96e-15 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.88e-15 | 76 |
bone element | 7.47e-14 | 82 |
immune system | 4.24e-13 | 93 |
hematopoietic system | 1.49e-12 | 98 |
blood island | 1.49e-12 | 98 |
skeletal element | 3.08e-12 | 90 |
hemolymphoid system | 1.89e-11 | 108 |
skeletal system | 8.87e-10 | 100 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.23e-08 | 14 |
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