FFCP PHASE1:Hg19::chr4:7873981..7874044,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=60312|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24017|TSSclassifier=N|UniProt=Q8N556|association_with_transcript=0bp_to_ENST00000360265_5end|description=CAGE_peak_4_at_AFAP1_5end|id=chr4:7873981..7874044,-|ontology_enrichment_celltype=CL:0000055!1.10e-28!180;CL:0000057!1.41e-21!75;CL:0000680!2.68e-13!57;CL:0000056!2.68e-13!57;CL:0000355!2.68e-13!57;CL:0000187!1.81e-12!54;CL:0000183!1.89e-11!59;CL:0002620!4.07e-11!23;CL:0000393!4.23e-11!60;CL:0000211!4.23e-11!60;CL:0000192!5.30e-10!42;CL:0000514!5.30e-10!42;CL:0000359!4.39e-08!32|ontology_enrichment_celltype_v019=CL:0002620;3.89e-11;23!CL:0000057;8.33e-09;73!CL:0000359;9.87e-08;32!CL:0000192;6.99e-07;43|ontology_enrichment_celltype_v019_2=CL:0000057,1.31e-21,76;CL:0002620,4.80e-11,23;CL:0000680,5.00e-11,58;CL:0000056,5.00e-11,58;CL:0000355,5.00e-11,58;CL:0000187,1.28e-10,55;CL:0000393,1.51e-08,61;CL:0000211,1.51e-08,61;CL:0000192,2.11e-08,43;CL:0000514,2.11e-08,43;CL:0000359,7.33e-08,32|ontology_enrichment_development_v019=CL:0000514;6.99e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!3.03e-18!83;UBERON:0002329!3.03e-18!83;UBERON:0003077!3.03e-18!83;UBERON:0003059!3.03e-18!83;UBERON:0007282!3.03e-18!83;UBERON:0009618!3.03e-18!83;UBERON:0007285!3.03e-18!83;UBERON:0000475!1.60e-16!365;UBERON:0004290!4.87e-15!70;UBERON:0001134!5.48e-15!61;UBERON:0002036!5.48e-15!61;UBERON:0003082!5.48e-15!61;UBERON:0002385!2.45e-14!63;UBERON:0001015!2.45e-14!63;UBERON:0000383!2.45e-14!63;UBERON:0000481!4.00e-14!347;UBERON:0000486!7.94e-12!82;UBERON:0000477!1.59e-11!286;UBERON:0002616!7.84e-11!59;UBERON:0000955!1.02e-09!69;UBERON:0006238!1.02e-09!69;UBERON:0005256!1.50e-09!143;UBERON:0001017!2.52e-09!82;UBERON:0000119!6.00e-09!312;UBERON:0001049!9.81e-09!57;UBERON:0005068!9.81e-09!57;UBERON:0006241!9.81e-09!57;UBERON:0007135!9.81e-09!57;UBERON:0000483!1.03e-08!309;UBERON:0000153!1.52e-08!129;UBERON:0007811!1.52e-08!129;UBERON:0005743!1.61e-08!86;UBERON:0000073!3.74e-08!94;UBERON:0001016!3.74e-08!94;UBERON:0000033!6.20e-08!123;UBERON:0000468!3.38e-07!659|ontology_enrichment_uberon_v019=UBERON:0001737;7.24e-08;9!UBERON:0001557;7.24e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.20e-12,62;UBERON:0002036,2.20e-12,62;UBERON:0003082,2.20e-12,62;UBERON:0007524,2.46e-12,73;UBERON:0003077,5.33e-12,72;UBERON:0007285,5.33e-12,72;UBERON:0002329,1.28e-11,71;UBERON:0003059,1.28e-11,71;UBERON:0007282,1.28e-11,71;UBERON:0004290,1.28e-11,71;UBERON:0009618,1.28e-11,71;UBERON:0002385,1.33e-11,64;UBERON:0001015,1.33e-11,64;UBERON:0000383,1.33e-11,64;UBERON:0000486,1.11e-09,83;UBERON:0007503,2.00e-09,78;UBERON:0001737,6.35e-08,9;UBERON:0005256,8.35e-07,122;UBERON:0000955,8.41e-07,68;UBERON:0006238,8.41e-07,68|phase1_expression=0.54503513781167,0.856402095563933,0,0,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0,0,0.655324116390517,0,3.83675694176145,1.65698687863958,0,0.602694528023977,0.730310090387373,0.487932798790507,0.492484232307152,1.63200552995402,1.25381888591235,0,0.273748850145768,0.627713197974014,0,0,0,0,0,0,3.67768489791571,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,2.42938867502708,4.69870898099936,7.52006865953834,2.31754430337318,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4000744059455,9.24402735151432,3.17782033951725,6.02356903572509,1.77334191099179,11.7742296029885,1.06748995729705,1.2333377420858,2.48968828319813,0,0.163461903113459,14.5303130539134,8.64263886719998,3.74914290934075,0.312160076830321,0.570471821544449,1.19558944441441,1.64408298101271,0.971237666208789,1.26405726032024,5.71631679513701,0.368502951935304,2.6864703105699,7.12801714369232,14.5887488274349,4.55080680969013,0.718618141816238,0.336672227908132,0.625592599359821,7.20366700258876,8.77955241761676,19.3087311353382,25.9911841908412,1.47461838108027,14.351170855109,15.1625746061183,23.3125091275518,9.60291507470087,21.12576849388,15.973713482829,11.5392450925586,3.20675031258406,0.68205903612839,15.9033277773792,15.4643829719063,13.0933306023238,15.9754316632476,6.04512589365842,18.6516651541536,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0.928735856063958,1.44375896333917,5.20549920175313,4.55178663210875,3.37415441836875,6.94852028214082,5.66486554640256,3.55905928666645,6.60673409984806,3.92442930250692,4.61696588335668,0,7.01208869017229,2.4694440679884,1.47008711385542,0,0,0,0,0,0,0,0,0,0.0925884451585296,1.3032332212413,0,0,0,0.70445216541493,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.48524337381443,0,1.1734125731352,0,0,0,2.6593811658487,2.08014873822732,0.514414748524284,4.25547396069835,0.532844358032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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=60312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24017 | |||
|TSSclassifier=N | |||
|UniProt=Q8N556 | |||
|association_with_transcript=0bp_to_ENST00000360265_5end | |||
|description=CAGE_peak_4_at_AFAP1_5end | |||
|id=chr4:7873981..7874044,- | |||
|ontology_enrichment_celltype=CL:0000055!1.10e-28!180;CL:0000057!1.41e-21!75;CL:0000680!2.68e-13!57;CL:0000056!2.68e-13!57;CL:0000355!2.68e-13!57;CL:0000187!1.81e-12!54;CL:0000183!1.89e-11!59;CL:0002620!4.07e-11!23;CL:0000393!4.23e-11!60;CL:0000211!4.23e-11!60;CL:0000192!5.30e-10!42;CL:0000514!5.30e-10!42;CL:0000359!4.39e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.89e-11;23!CL:0000057;8.33e-09;73!CL:0000359;9.87e-08;32!CL:0000192;6.99e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.31e-21,76;CL:0002620,4.80e-11,23;CL:0000680,5.00e-11,58;CL:0000056,5.00e-11,58;CL:0000355,5.00e-11,58;CL:0000187,1.28e-10,55;CL:0000393,1.51e-08,61;CL:0000211,1.51e-08,61;CL:0000192,2.11e-08,43;CL:0000514,2.11e-08,43;CL:0000359,7.33e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000514;6.99e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.03e-18!83;UBERON:0002329!3.03e-18!83;UBERON:0003077!3.03e-18!83;UBERON:0003059!3.03e-18!83;UBERON:0007282!3.03e-18!83;UBERON:0009618!3.03e-18!83;UBERON:0007285!3.03e-18!83;UBERON:0000475!1.60e-16!365;UBERON:0004290!4.87e-15!70;UBERON:0001134!5.48e-15!61;UBERON:0002036!5.48e-15!61;UBERON:0003082!5.48e-15!61;UBERON:0002385!2.45e-14!63;UBERON:0001015!2.45e-14!63;UBERON:0000383!2.45e-14!63;UBERON:0000481!4.00e-14!347;UBERON:0000486!7.94e-12!82;UBERON:0000477!1.59e-11!286;UBERON:0002616!7.84e-11!59;UBERON:0000955!1.02e-09!69;UBERON:0006238!1.02e-09!69;UBERON:0005256!1.50e-09!143;UBERON:0001017!2.52e-09!82;UBERON:0000119!6.00e-09!312;UBERON:0001049!9.81e-09!57;UBERON:0005068!9.81e-09!57;UBERON:0006241!9.81e-09!57;UBERON:0007135!9.81e-09!57;UBERON:0000483!1.03e-08!309;UBERON:0000153!1.52e-08!129;UBERON:0007811!1.52e-08!129;UBERON:0005743!1.61e-08!86;UBERON:0000073!3.74e-08!94;UBERON:0001016!3.74e-08!94;UBERON:0000033!6.20e-08!123;UBERON:0000468!3.38e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.24e-08;9!UBERON:0001557;7.24e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.20e-12,62;UBERON:0002036,2.20e-12,62;UBERON:0003082,2.20e-12,62;UBERON:0007524,2.46e-12,73;UBERON:0003077,5.33e-12,72;UBERON:0007285,5.33e-12,72;UBERON:0002329,1.28e-11,71;UBERON:0003059,1.28e-11,71;UBERON:0007282,1.28e-11,71;UBERON:0004290,1.28e-11,71;UBERON:0009618,1.28e-11,71;UBERON:0002385,1.33e-11,64;UBERON:0001015,1.33e-11,64;UBERON:0000383,1.33e-11,64;UBERON:0000486,1.11e-09,83;UBERON:0007503,2.00e-09,78;UBERON:0001737,6.35e-08,9;UBERON:0005256,8.35e-07,122;UBERON:0000955,8.41e-07,68;UBERON:0006238,8.41e-07,68 | |||
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| |||
|short_description=p4@AFAP1 | |||
}} |
Revision as of 11:51, 13 September 2013
Short description: | p4@AFAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_AFAP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000360265_5end |
EntrezGene: | AFAP1 |
HGNC: | 24017 |
UniProt: | Q8N556 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.31e-21 | 76 |
skin fibroblast | 4.80e-11 | 23 |
muscle precursor cell | 5.00e-11 | 58 |
myoblast | 5.00e-11 | 58 |
multi-potent skeletal muscle stem cell | 5.00e-11 | 58 |
muscle cell | 1.28e-10 | 55 |
electrically responsive cell | 1.51e-08 | 61 |
electrically active cell | 1.51e-08 | 61 |
smooth muscle cell | 2.11e-08 | 43 |
smooth muscle myoblast | 2.11e-08 | 43 |
vascular associated smooth muscle cell | 7.33e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.20e-12 | 62 |
striated muscle tissue | 2.20e-12 | 62 |
myotome | 2.20e-12 | 62 |
dense mesenchyme tissue | 2.46e-12 | 73 |
paraxial mesoderm | 5.33e-12 | 72 |
presumptive paraxial mesoderm | 5.33e-12 | 72 |
somite | 1.28e-11 | 71 |
presomitic mesoderm | 1.28e-11 | 71 |
presumptive segmental plate | 1.28e-11 | 71 |
dermomyotome | 1.28e-11 | 71 |
trunk paraxial mesoderm | 1.28e-11 | 71 |
muscle tissue | 1.33e-11 | 64 |
musculature | 1.33e-11 | 64 |
musculature of body | 1.33e-11 | 64 |
multilaminar epithelium | 1.11e-09 | 83 |
epithelial vesicle | 2.00e-09 | 78 |
larynx | 6.35e-08 | 9 |
trunk mesenchyme | 8.35e-07 | 122 |
brain | 8.41e-07 | 68 |
future brain | 8.41e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.