FFCP PHASE1:Hg19::chr5:153667008..153667036,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55568|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19873|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000519571_5end|coexpression_cluster_id=C108|description=CAGE_peak_3_at_GALNT10_5end|id=chr5:153667008..153667036,+|ontology_enrichment_celltype=CL:0000222!4.62e-20!119;CL:0000213!8.89e-14!57;CL:0000215!8.89e-14!57;CL:0000220!5.19e-13!246;CL:0002139!6.57e-13!24;CL:0002321!1.34e-12!248;CL:0000071!1.06e-11!18;CL:0002546!1.06e-11!18;CL:0000359!2.40e-11!32;CL:0000055!8.71e-11!180;CL:0000192!6.77e-10!42;CL:0000514!6.77e-10!42;CL:0000066!5.57e-09!254;CL:1000413!7.27e-09!9;CL:0000077!1.33e-08!19;CL:0000076!1.51e-08!62;CL:0000115!1.54e-08!35;CL:0002078!5.49e-08!44;CL:0000680!1.55e-07!57;CL:0000056!1.55e-07!57;CL:0000355!1.55e-07!57;CL:0000187!1.69e-07!54;CL:0000183!6.29e-07!59|ontology_enrichment_celltype_v019=CL:0002139;1.92e-15;24!CL:0000071;2.21e-15;18!CL:1000413;3.03e-13;9!CL:0000213;6.03e-12;58!CL:0000215;6.03e-12;58!CL:0000077;1.24e-11;19!CL:0000115;1.30e-10;36!CL:0002544;2.42e-09;6!CL:0000359;6.14e-08;32!CL:0002543;6.21e-08;6!CL:0000076;6.54e-08;63|ontology_enrichment_celltype_v019_2=CL:0000213,9.04e-20,58;CL:0000215,9.04e-20,58;CL:0000222,3.25e-18,121;CL:0000071,1.71e-15,18;CL:0002546,1.71e-15,18;CL:0002139,1.76e-15,24;CL:1000413,2.89e-13,9;CL:0000076,5.28e-13,63;CL:0000077,8.08e-12,19;CL:0000115,1.90e-11,36;CL:0002544,2.22e-09,6;CL:0002078,5.02e-09,45;CL:0002321,1.61e-08,250;CL:0000359,2.00e-08,32;CL:0002543,4.81e-08,6;CL:0000066,2.08e-07,253|ontology_enrichment_development_v019=CL:0002546;2.21e-15;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002049!3.24e-25!79;UBERON:0007798!3.24e-25!79;UBERON:0001981!5.60e-22!60;UBERON:0007500!5.60e-22!60;UBERON:0004537!5.60e-22!60;UBERON:0006965!5.60e-22!60;UBERON:0000055!1.68e-21!69;UBERON:0003914!8.51e-20!118;UBERON:0001637!1.43e-19!42;UBERON:0003509!1.43e-19!42;UBERON:0004572!1.43e-19!42;UBERON:0004535!3.86e-17!110;UBERON:0004872!4.26e-17!84;UBERON:0000490!2.28e-16!138;UBERON:0001009!5.82e-16!113;UBERON:0004573!3.42e-15!33;UBERON:0004571!3.42e-15!33;UBERON:0002100!3.27e-13!216;UBERON:0001986!1.06e-11!18;UBERON:0004638!1.06e-11!18;UBERON:0004852!1.06e-11!18;UBERON:0000947!1.13e-11!21;UBERON:0010191!1.13e-11!21;UBERON:0000477!1.62e-11!286;UBERON:0000025!2.99e-11!194;UBERON:0000487!6.45e-11!22;UBERON:0000119!5.22e-10!312;UBERON:0004111!1.79e-09!241;UBERON:0000483!2.75e-09!309;UBERON:0009569!6.24e-09!113;UBERON:0003915!7.27e-09!9;UBERON:0004700!7.27e-09!9;UBERON:0001917!7.27e-09!9;UBERON:0006914!1.24e-08!25;UBERON:0000475!1.27e-07!365;UBERON:0000915!1.60e-07!52;UBERON:0003104!3.62e-07!238;UBERON:0009142!3.62e-07!238|ontology_enrichment_uberon_v019=UBERON:0001637;4.62e-19;42!UBERON:0003509;4.62e-19;42!UBERON:0004572;4.62e-19;42!UBERON:0004638;2.21e-15;18!UBERON:0001986;2.21e-15;18!UBERON:0004852;2.21e-15;18!UBERON:0000487;5.02e-15;22!UBERON:0004573;1.26e-14;33!UBERON:0004571;1.26e-14;33!UBERON:0000947;1.65e-13;21!UBERON:0010191;1.65e-13;21!UBERON:0000490;2.57e-13;33!UBERON:0003915;3.03e-13;9!UBERON:0004700;3.03e-13;9!UBERON:0001917;3.03e-13;9!UBERON:0007500;7.64e-13;56!UBERON:0001981;7.64e-13;56!UBERON:0004537;7.64e-13;56!UBERON:0006914;1.53e-12;25!UBERON:0002049;7.99e-12;75!UBERON:0007798;7.99e-12;75!UBERON:0000055;5.62e-10;65!UBERON:0003914;2.46e-09;74!UBERON:0000310;3.90e-09;10!UBERON:0007625;1.30e-08;11!UBERON:0000025;3.74e-08;93!UBERON:0001443;4.17e-08;11!UBERON:0003688;5.80e-07;6!UBERON:0002358;5.80e-07;6!UBERON:0003684;5.80e-07;6!UBERON:0001178;5.80e-07;6!UBERON:0001009;6.28e-07;112|ontology_enrichment_uberon_v019_2=UBERON:0002049,5.23e-25,78;UBERON:0007798,5.23e-25,78;UBERON:0001637,1.17e-23,42;UBERON:0003509,1.17e-23,42;UBERON:0004572,1.17e-23,42;UBERON:0007500,8.71e-22,59;UBERON:0001981,8.71e-22,59;UBERON:0004537,8.71e-22,59;UBERON:0006965,8.71e-22,59;UBERON:0000055,4.07e-21,68;UBERON:0004535,7.24e-18,109;UBERON:0003914,2.40e-17,117;UBERON:0001009,5.92e-17,112;UBERON:0004573,1.36e-16,33;UBERON:0004571,1.36e-16,33;UBERON:0004872,1.46e-16,83;UBERON:0004638,1.71e-15,18;UBERON:0001986,1.71e-15,18;UBERON:0004852,1.71e-15,18;UBERON:0000487,3.04e-15,22;UBERON:0000947,1.45e-13,21;UBERON:0010191,1.45e-13,21;UBERON:0003915,2.89e-13,9;UBERON:0004700,2.89e-13,9;UBERON:0001917,2.89e-13,9;UBERON:0006914,9.95e-13,25;UBERON:0002100,5.26e-11,199;UBERON:0000490,1.79e-10,148;UBERON:0000310,3.12e-09,10;UBERON:0000025,3.98e-09,192;UBERON:0000915,5.15e-09,52;UBERON:0007625,1.44e-08,11;UBERON:0009569,1.51e-08,112;UBERON:0001443,3.42e-08,11;UBERON:0000119,3.75e-08,309;UBERON:0000483,2.48e-07,306;UBERON:0004111,5.26e-07,240;UBERON:0003688,6.35e-07,6;UBERON:0002358,6.35e-07,6;UBERON:0003684,6.35e-07,6;UBERON:0001178,6.35e-07,6|phase1_expression=3.08853244759946,2.14100523890983,5.92008497203079,3.00219895059391,2.23480547213644,2.61701557230111,0,0,0,4.91467873003018,1.39560233594486,0,0,0,0.331397375727916,2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55568 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19873 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000519571_5end | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_3_at_GALNT10_5end | |||
|id=chr5:153667008..153667036,+ | |||
|ontology_enrichment_celltype=CL:0000222!4.62e-20!119;CL:0000213!8.89e-14!57;CL:0000215!8.89e-14!57;CL:0000220!5.19e-13!246;CL:0002139!6.57e-13!24;CL:0002321!1.34e-12!248;CL:0000071!1.06e-11!18;CL:0002546!1.06e-11!18;CL:0000359!2.40e-11!32;CL:0000055!8.71e-11!180;CL:0000192!6.77e-10!42;CL:0000514!6.77e-10!42;CL:0000066!5.57e-09!254;CL:1000413!7.27e-09!9;CL:0000077!1.33e-08!19;CL:0000076!1.51e-08!62;CL:0000115!1.54e-08!35;CL:0002078!5.49e-08!44;CL:0000680!1.55e-07!57;CL:0000056!1.55e-07!57;CL:0000355!1.55e-07!57;CL:0000187!1.69e-07!54;CL:0000183!6.29e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.92e-15;24!CL:0000071;2.21e-15;18!CL:1000413;3.03e-13;9!CL:0000213;6.03e-12;58!CL:0000215;6.03e-12;58!CL:0000077;1.24e-11;19!CL:0000115;1.30e-10;36!CL:0002544;2.42e-09;6!CL:0000359;6.14e-08;32!CL:0002543;6.21e-08;6!CL:0000076;6.54e-08;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,9.04e-20,58;CL:0000215,9.04e-20,58;CL:0000222,3.25e-18,121;CL:0000071,1.71e-15,18;CL:0002546,1.71e-15,18;CL:0002139,1.76e-15,24;CL:1000413,2.89e-13,9;CL:0000076,5.28e-13,63;CL:0000077,8.08e-12,19;CL:0000115,1.90e-11,36;CL:0002544,2.22e-09,6;CL:0002078,5.02e-09,45;CL:0002321,1.61e-08,250;CL:0000359,2.00e-08,32;CL:0002543,4.81e-08,6;CL:0000066,2.08e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002546;2.21e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!3.24e-25!79;UBERON:0007798!3.24e-25!79;UBERON:0001981!5.60e-22!60;UBERON:0007500!5.60e-22!60;UBERON:0004537!5.60e-22!60;UBERON:0006965!5.60e-22!60;UBERON:0000055!1.68e-21!69;UBERON:0003914!8.51e-20!118;UBERON:0001637!1.43e-19!42;UBERON:0003509!1.43e-19!42;UBERON:0004572!1.43e-19!42;UBERON:0004535!3.86e-17!110;UBERON:0004872!4.26e-17!84;UBERON:0000490!2.28e-16!138;UBERON:0001009!5.82e-16!113;UBERON:0004573!3.42e-15!33;UBERON:0004571!3.42e-15!33;UBERON:0002100!3.27e-13!216;UBERON:0001986!1.06e-11!18;UBERON:0004638!1.06e-11!18;UBERON:0004852!1.06e-11!18;UBERON:0000947!1.13e-11!21;UBERON:0010191!1.13e-11!21;UBERON:0000477!1.62e-11!286;UBERON:0000025!2.99e-11!194;UBERON:0000487!6.45e-11!22;UBERON:0000119!5.22e-10!312;UBERON:0004111!1.79e-09!241;UBERON:0000483!2.75e-09!309;UBERON:0009569!6.24e-09!113;UBERON:0003915!7.27e-09!9;UBERON:0004700!7.27e-09!9;UBERON:0001917!7.27e-09!9;UBERON:0006914!1.24e-08!25;UBERON:0000475!1.27e-07!365;UBERON:0000915!1.60e-07!52;UBERON:0003104!3.62e-07!238;UBERON:0009142!3.62e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.62e-19;42!UBERON:0003509;4.62e-19;42!UBERON:0004572;4.62e-19;42!UBERON:0004638;2.21e-15;18!UBERON:0001986;2.21e-15;18!UBERON:0004852;2.21e-15;18!UBERON:0000487;5.02e-15;22!UBERON:0004573;1.26e-14;33!UBERON:0004571;1.26e-14;33!UBERON:0000947;1.65e-13;21!UBERON:0010191;1.65e-13;21!UBERON:0000490;2.57e-13;33!UBERON:0003915;3.03e-13;9!UBERON:0004700;3.03e-13;9!UBERON:0001917;3.03e-13;9!UBERON:0007500;7.64e-13;56!UBERON:0001981;7.64e-13;56!UBERON:0004537;7.64e-13;56!UBERON:0006914;1.53e-12;25!UBERON:0002049;7.99e-12;75!UBERON:0007798;7.99e-12;75!UBERON:0000055;5.62e-10;65!UBERON:0003914;2.46e-09;74!UBERON:0000310;3.90e-09;10!UBERON:0007625;1.30e-08;11!UBERON:0000025;3.74e-08;93!UBERON:0001443;4.17e-08;11!UBERON:0003688;5.80e-07;6!UBERON:0002358;5.80e-07;6!UBERON:0003684;5.80e-07;6!UBERON:0001178;5.80e-07;6!UBERON:0001009;6.28e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,5.23e-25,78;UBERON:0007798,5.23e-25,78;UBERON:0001637,1.17e-23,42;UBERON:0003509,1.17e-23,42;UBERON:0004572,1.17e-23,42;UBERON:0007500,8.71e-22,59;UBERON:0001981,8.71e-22,59;UBERON:0004537,8.71e-22,59;UBERON:0006965,8.71e-22,59;UBERON:0000055,4.07e-21,68;UBERON:0004535,7.24e-18,109;UBERON:0003914,2.40e-17,117;UBERON:0001009,5.92e-17,112;UBERON:0004573,1.36e-16,33;UBERON:0004571,1.36e-16,33;UBERON:0004872,1.46e-16,83;UBERON:0004638,1.71e-15,18;UBERON:0001986,1.71e-15,18;UBERON:0004852,1.71e-15,18;UBERON:0000487,3.04e-15,22;UBERON:0000947,1.45e-13,21;UBERON:0010191,1.45e-13,21;UBERON:0003915,2.89e-13,9;UBERON:0004700,2.89e-13,9;UBERON:0001917,2.89e-13,9;UBERON:0006914,9.95e-13,25;UBERON:0002100,5.26e-11,199;UBERON:0000490,1.79e-10,148;UBERON:0000310,3.12e-09,10;UBERON:0000025,3.98e-09,192;UBERON:0000915,5.15e-09,52;UBERON:0007625,1.44e-08,11;UBERON:0009569,1.51e-08,112;UBERON:0001443,3.42e-08,11;UBERON:0000119,3.75e-08,309;UBERON:0000483,2.48e-07,306;UBERON:0004111,5.26e-07,240;UBERON:0003688,6.35e-07,6;UBERON:0002358,6.35e-07,6;UBERON:0003684,6.35e-07,6;UBERON:0001178,6.35e-07,6 | |||
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| |||
|short_description=p3@GALNT10 | |||
}} |
Revision as of 14:20, 13 September 2013
Short description: | p3@GALNT10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GALNT10_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | 0bp_to_ENST00000519571_5end |
EntrezGene: | GALNT10 |
HGNC: | 19873 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 9.04e-20 | 58 |
barrier cell | 9.04e-20 | 58 |
mesodermal cell | 3.25e-18 | 121 |
blood vessel endothelial cell | 1.71e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.71e-15 | 18 |
endothelial cell of vascular tree | 1.76e-15 | 24 |
endothelial cell of artery | 2.89e-13 | 9 |
squamous epithelial cell | 5.28e-13 | 63 |
mesothelial cell | 8.08e-12 | 19 |
endothelial cell | 1.90e-11 | 36 |
aortic endothelial cell | 2.22e-09 | 6 |
meso-epithelial cell | 5.02e-09 | 45 |
embryonic cell | 1.61e-08 | 250 |
vascular associated smooth muscle cell | 2.00e-08 | 32 |
vein endothelial cell | 4.81e-08 | 6 |
epithelial cell | 2.08e-07 | 253 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.