FFCP PHASE1:Mm9::chr18:10181324..10181354,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19877|HGNC=|MCL_coexpression_id=36|UniProt=P70335,Q3UE22|association_with_transcript=435bp_to_ENSMUST00000067947,NM_009071,uc008eaq.1,uc008ear.1_5end|description=CAGE_peak_9_at_Rock1_5end|id=chr18:10181324..10181354,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000988,2.31e-08,32;CL:0002032,2.31e-08,32;CL:0000037,2.31e-08,32;CL:0000837,2.31e-08,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,8.57e-09,3;DOID:4045,8.57e-09,3|ontology_enrichment_uberon=UBERON:0002193!5.22e-10!48;UBERON:0002390!9.81e-09!45;UBERON:0003061!9.81e-09!45;UBERON:0002405!2.56e-08!70|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.02e-11,48;UBERON:0002405,1.02e-11,48;UBERON:0002390,4.86e-11,45;UBERON:0003061,4.86e-11,45;UBERON:0002370,3.58e-10,23;UBERON:0000974,3.58e-10,23;UBERON:0004807,3.58e-10,23;UBERON:0005058,3.58e-10,23;UBERON:0003351,3.58e-10,23;UBERON:0009113,3.58e-10,23;UBERON:0003295,3.58e-10,23;UBERON:0009722,3.58e-10,23;UBERON:0005562,3.58e-10,23;UBERON:0007690,3.58e-10,23;UBERON:0006562,1.17e-09,24;UBERON:0003408,1.17e-09,24;UBERON:0001557,1.17e-09,24;UBERON:0001042,1.17e-09,24;UBERON:0008814,1.17e-09,24;UBERON:0009145,1.17e-09,24;UBERON:0004177,3.44e-09,29;UBERON:0005057,3.44e-09,29;UBERON:0000072,2.41e-08,27;UBERON:0000077,3.35e-07,35|phase1_expression=0,0,0,0,0,0,0,2.58246646883153,0.140788722151667,0.468129052643987,0.171217968225505,0.159544317990673,3.76641605848653,2.18551006047494,0.666219523631325,0.607425802169478,0.699561878128147,2.05050407482854,2.19383093769182,1.27316895539409,0.0850432901510698,0.496454756004426,0.261199789138935,0.319984845586813,0.68822784320151,0,0,0,0,0,0,0,0,0,0,0,0,6.27797446105362,2.3440060335714,7.85285615960697,11.1763982725893,6.14740936462601,4.36959317728038,0.251793635951155,0,0,0,0,0,0.194429899074283,0,0,3.02008690903925,0.725362142011344,2.35265659399725,0,0.286533439938757,0.515672092277442,0,0,0,0,0,0.449949858640699,0,0.7104801149461,0,0,0.103689612308478,0,0,0,0,0,0,0,1.10115880999389,0,0,0,0,0,0,0,0.15279824777681,0,0.284743361598206,0,0.151452386666368,0.0755715601067855,0.289864488701678,0.860423876981386,0.679971333707751,0,0,0,0,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0.253359865475099,0,0.22836775943812,7.25026074212081,0,0,0,0,0,0.117588707135705,0.125666591329675,0,0.578397427679647,0,0.323533699894818,0.441683036920787,0,1.86391761218122,0,0,0.255457055208591,2.51611761462433,0.599902730993408,1.65191295194984,0.299581278809645,0,0,0,0,0,0,0,0.497627882440372,0,0,0.130120442962704,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0.219195732427575,0,0,0.205782136407943,0,0.702213187313235,1.02939162845886,1.42081749697796,0,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0.268273401399619,0.233530684734339,0,0.32833492815819,0.0810688095458557,0.438599962275997,0.439100230582101,0.402619256281115,0.210289948564127,0,0,0,0,0,0,0.201683524623343,0.22237804384487,0,0,0.494096864172033,0,0.198956472041151,0,0,0.648414149624083,0,0,0.114248512609729,0,0,0.193952487167626,0,0.189709611372772,0,0.156998727841375,0.123397163921801,0,0.333690211432188,0,0.224862112384854,0,0.482354319504834,0,0.287696137450811,0,0.274561413188081,1.43768206527355,0,0,0.757736633841335,0.179397413521912,0,0.184753190166605,0,0,0.169745085775188,0,0.167506257441816,0,0.195133647857799,0.315270288212382,0.44292937929755,0.318909537314974,0.655453258862952,0.345369963731791,0.433947175744535,0,0,0,0.275936746304732,0.160550589987792,0,0,0,0,0.390438744296638,0.646270193198397,0.238968797952552,0,0.283076530788832,0,0,0,0,0.141940085208269,0,0,0.494910368917606,1.32745138339963,0.485561272309963,0,0,0,0,0,0,0.712994756769443,0.632073515871632,0,0,1.36175842301515,0,0,0.214337035031592,0,0.178368817602071,0.329098041204242,0,0,0.21183207086382,0.882113592219848,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0,0.18542530201051,0.854354403989263,0,0,0.753473828018764,2.05041341581538,0.915112692826091,3.22959016988325,3.07893195112048,3.04039942369732,0.954670618015114,0,0.203319467126849,0,0.209088296014469,0.218362563746178,0,0,0.26175594198403,0.259229946583586,0,0,0,0,0,0.129159823477731,0.337912250981556,0.58678619322877,0,0.209718688851422,0.483168241652012,0,1.89606672376907,0,0.102710957164827,0.25984164595559,0.537080087002444,0.596044064343795,1.32214994471966,1.03382669022204,1.71642964911851,1.143102099825,2.31900225814733,1.8516997340553,2.30908419936791,2.22066114144981,0.226730383615211,0.221985953374065,0.269141569828427,0.167884616364078,0.19318959403219,0,0,0,0,0.564751842617067,0.460325236507177,1.14579102687879,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0,0,0.419226325255965,0,0,0,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.192075457214608,0.229741875822453,0,0.115884325944855,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0,0.0941093804153306,0,0.3658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| ||
|EntrezGene=19877 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=P70335,Q3UE22 | |||
|association_with_transcript=435bp_to_ENSMUST00000067947,NM_009071,uc008eaq.1,uc008ear.1_5end | |||
|description=CAGE_peak_9_at_Rock1_5end | |||
|id=chr18:10181324..10181354,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.31e-08,32;CL:0002032,2.31e-08,32;CL:0000037,2.31e-08,32;CL:0000837,2.31e-08,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,8.57e-09,3;DOID:4045,8.57e-09,3 | |||
|ontology_enrichment_uberon=UBERON:0002193!5.22e-10!48;UBERON:0002390!9.81e-09!45;UBERON:0003061!9.81e-09!45;UBERON:0002405!2.56e-08!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.02e-11,48;UBERON:0002405,1.02e-11,48;UBERON:0002390,4.86e-11,45;UBERON:0003061,4.86e-11,45;UBERON:0002370,3.58e-10,23;UBERON:0000974,3.58e-10,23;UBERON:0004807,3.58e-10,23;UBERON:0005058,3.58e-10,23;UBERON:0003351,3.58e-10,23;UBERON:0009113,3.58e-10,23;UBERON:0003295,3.58e-10,23;UBERON:0009722,3.58e-10,23;UBERON:0005562,3.58e-10,23;UBERON:0007690,3.58e-10,23;UBERON:0006562,1.17e-09,24;UBERON:0003408,1.17e-09,24;UBERON:0001557,1.17e-09,24;UBERON:0001042,1.17e-09,24;UBERON:0008814,1.17e-09,24;UBERON:0009145,1.17e-09,24;UBERON:0004177,3.44e-09,29;UBERON:0005057,3.44e-09,29;UBERON:0000072,2.41e-08,27;UBERON:0000077,3.35e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,2.58246646883153,0.140788722151667,0.468129052643987,0.171217968225505,0.159544317990673,3.76641605848653,2.18551006047494,0.666219523631325,0.607425802169478,0.699561878128147,2.05050407482854,2.19383093769182,1.27316895539409,0.0850432901510698,0.496454756004426,0.261199789138935,0.319984845586813,0.68822784320151,0,0,0,0,0,0,0,0,0,0,0,0,6.27797446105362,2.3440060335714,7.85285615960697,11.1763982725893,6.14740936462601,4.36959317728038,0.251793635951155,0,0,0,0,0,0.194429899074283,0,0,3.02008690903925,0.725362142011344,2.35265659399725,0,0.286533439938757,0.515672092277442,0,0,0,0,0,0.449949858640699,0,0.7104801149461,0,0,0.103689612308478,0,0,0,0,0,0,0,1.10115880999389,0,0,0,0,0,0,0,0.15279824777681,0,0.284743361598206,0,0.151452386666368,0.0755715601067855,0.289864488701678,0.860423876981386,0.679971333707751,0,0,0,0,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0.253359865475099,0,0.22836775943812,7.25026074212081,0,0,0,0,0,0.117588707135705,0.125666591329675,0,0.578397427679647,0,0.323533699894818,0.441683036920787,0,1.86391761218122,0,0,0.255457055208591,2.51611761462433,0.599902730993408,1.65191295194984,0.299581278809645,0,0,0,0,0,0,0,0.497627882440372,0,0,0.130120442962704,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0.219195732427575,0,0,0.205782136407943,0,0.702213187313235,1.02939162845886,1.42081749697796,0,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0.268273401399619,0.233530684734339,0,0.32833492815819,0.0810688095458557,0.438599962275997,0.439100230582101,0.402619256281115,0.210289948564127,0,0,0,0,0,0,0.201683524623343,0.22237804384487,0,0,0.494096864172033,0,0.198956472041151,0,0,0.648414149624083,0,0,0.114248512609729,0,0,0.193952487167626,0,0.189709611372772,0,0.156998727841375,0.123397163921801,0,0.333690211432188,0,0.224862112384854,0,0.482354319504834,0,0.287696137450811,0,0.274561413188081,1.43768206527355,0,0,0.757736633841335,0.179397413521912,0,0.184753190166605,0,0,0.169745085775188,0,0.167506257441816,0,0.195133647857799,0.315270288212382,0.44292937929755,0.318909537314974,0.655453258862952,0.345369963731791,0.433947175744535,0,0,0,0.275936746304732,0.160550589987792,0,0,0,0,0.390438744296638,0.646270193198397,0.238968797952552,0,0.283076530788832,0,0,0,0,0.141940085208269,0,0,0.494910368917606,1.32745138339963,0.485561272309963,0,0,0,0,0,0,0.712994756769443,0.632073515871632,0,0,1.36175842301515,0,0,0.214337035031592,0,0.178368817602071,0.329098041204242,0,0,0.21183207086382,0.882113592219848,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0,0.18542530201051,0.854354403989263,0,0,0.753473828018764,2.05041341581538,0.915112692826091,3.22959016988325,3.07893195112048,3.04039942369732,0.954670618015114,0,0.203319467126849,0,0.209088296014469,0.218362563746178,0,0,0.26175594198403,0.259229946583586,0,0,0,0,0,0.129159823477731,0.337912250981556,0.58678619322877,0,0.209718688851422,0.483168241652012,0,1.89606672376907,0,0.102710957164827,0.25984164595559,0.537080087002444,0.596044064343795,1.32214994471966,1.03382669022204,1.71642964911851,1.143102099825,2.31900225814733,1.8516997340553,2.30908419936791,2.22066114144981,0.226730383615211,0.221985953374065,0.269141569828427,0.167884616364078,0.19318959403219,0,0,0,0,0.564751842617067,0.460325236507177,1.14579102687879,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0,0,0.419226325255965,0,0,0,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.192075457214608,0.229741875822453,0,0.115884325944855,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0,0.0941093804153306,0,0.365855945745545,0,0,0,0.237270036248348,0,0.409231043169689,0,0,0,0.233931608445408,0,0.191288332068843,0.220591419119515,0 | |||
|short_description=p9@Rock1 | |||
}} |
Revision as of 15:40, 13 September 2013
Short description: | p9@Rock1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Rock1_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 435bp_to_ENSMUST00000067947, NM_009071, uc008eaq.1, uc008ear.1_5end |
EntrezGene: | Rock1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.31e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.31e-08 | 32 |
hematopoietic stem cell | 2.31e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.31e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.02e-11 | 48 |
immune system | 1.02e-11 | 48 |
hematopoietic system | 4.86e-11 | 45 |
blood island | 4.86e-11 | 45 |
thymus | 3.58e-10 | 23 |
neck | 3.58e-10 | 23 |
respiratory system epithelium | 3.58e-10 | 23 |
hemolymphoid system gland | 3.58e-10 | 23 |
pharyngeal epithelium | 3.58e-10 | 23 |
thymic region | 3.58e-10 | 23 |
pharyngeal gland | 3.58e-10 | 23 |
entire pharyngeal arch endoderm | 3.58e-10 | 23 |
thymus primordium | 3.58e-10 | 23 |
early pharyngeal endoderm | 3.58e-10 | 23 |
pharynx | 1.17e-09 | 24 |
gland of gut | 1.17e-09 | 24 |
upper respiratory tract | 1.17e-09 | 24 |
chordate pharynx | 1.17e-09 | 24 |
pharyngeal arch system | 1.17e-09 | 24 |
pharyngeal region of foregut | 1.17e-09 | 24 |
hemopoietic organ | 3.44e-09 | 29 |
immune organ | 3.44e-09 | 29 |
segment of respiratory tract | 2.41e-08 | 27 |
mixed endoderm/mesoderm-derived structure | 3.35e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 8.57e-09 | 3 |
muscle cancer | 8.57e-09 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.