FFCP PHASE1:Hg19::chr6:29855505..29855508,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3136|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=4965|TSSclassifier=S|UniProt=|association_with_transcript=-20bp_to_ENST00000383620,uc003nod.2_5end|description=CAGE_peak_1_at_HLA-H_5end|id=chr6:29855505..29855508,+|ontology_enrichment_celltype=CL:0000738!1.90e-15!140;CL:0002087!7.26e-15!119;CL:0002031!8.32e-15!124;CL:0000860!2.23e-13!45;CL:0002009!2.98e-13!65;CL:0000766!9.19e-13!76;CL:0000557!1.15e-12!71;CL:0002057!1.21e-12!42;CL:0002194!1.40e-12!63;CL:0000576!1.40e-12!63;CL:0000040!1.40e-12!63;CL:0000559!1.40e-12!63;CL:0000839!7.19e-12!70;CL:0000988!6.45e-08!182;CL:0002032!1.90e-07!165;CL:0000837!1.90e-07!165;CL:0000037!2.17e-07!172;CL:0000566!2.17e-07!172|ontology_enrichment_celltype_v019=CL:0000860;2.73e-19;33!CL:0002057;2.73e-19;33!CL:0000473;5.02e-16;39!CL:0000234;5.02e-16;39!CL:0000576;3.56e-10;48!CL:0000766;1.10e-08;69|ontology_enrichment_celltype_v019_2=CL:0000738,1.85e-20,136;CL:0000473,2.78e-19,48;CL:0000234,2.78e-19,48;CL:0000860,7.67e-19,42;CL:0002057,7.67e-19,42;CL:0002087,8.09e-18,115;CL:0002031,1.71e-17,120;CL:0000766,1.29e-16,72;CL:0002009,5.97e-15,61;CL:0000557,1.16e-14,67;CL:0002194,1.48e-14,59;CL:0000576,1.48e-14,59;CL:0000040,1.48e-14,59;CL:0000559,1.48e-14,59;CL:0000839,7.02e-14,66;CL:0000988,4.75e-13,177;CL:0002032,5.55e-13,161;CL:0000837,5.55e-13,161;CL:0000037,7.07e-13,168;CL:0000763,4.61e-09,108;CL:0000049,4.61e-09,108|ontology_enrichment_development_v019=CL:0002057;5.66e-14;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.02e-11!102;UBERON:0003061!1.02e-11!102;UBERON:0002193!2.93e-11!112;UBERON:0002371!1.69e-10!80;UBERON:0001474!5.63e-10!86;UBERON:0002405!2.86e-09!115;UBERON:0004765!5.40e-08!101;UBERON:0001434!5.40e-08!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.61e-12,76;UBERON:0001474,8.45e-11,82;UBERON:0002390,6.98e-10,98;UBERON:0003061,6.98e-10,98;UBERON:0002405,1.11e-09,93;UBERON:0004765,6.58e-09,90;UBERON:0002193,6.03e-08,108;UBERON:0001434,4.88e-07,100|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.893922188854576,0,0,0,0,0,0,0.218441372130172,0.791300934685361,0,0,0.672325146451775,0,0,0.487932798790507,0.246242116153576,0,0,0.286235987131057,0.136874425072884,0,1.29902789771517,1.06730766284929,1.02324015707783,1.18009283054671,1.15148819429164,1.54816123316076,1.83884244895785,0.30120591877825,0.369754010166788,0.0774672005803016,0.142169232487422,0.880801318004542,1.66198622559563,1.40381113229099,0.651032612147555,0.447830948479849,0.971680998056939,0.77272670290256,1.45398238779565,0,1.21292030593908,1.62700325833979,2.46700732813095,2.16794459626573,3.45230870786581,1.7931249457037,1.6553756092201,1.37898272294647,1.93645405075148,0,2.44715041405386,1.63743690034707,1.12361742222542,3.36692281607993,0.320929027076094,3.19668562899521,2.96866170168044,2.19410023383795,0.426224750532694,2.03146467040009,1.70215567407342,1.86846674698672,2.00998932205395,1.0429658368404,2.38907729175628,3.63239701580021,1.10483290796269,3.48108626184973,0.633765858935825,0.425208599930087,1.04829322754188,1.79725809834392,2.10247649978109,0.16072558669708,0,0.99458338599545,0.91332076882317,5.27988733383968,1.63841583378639,0.889509253863555,0.426730222566507,0,1.14950487990897,1.32208974556972,1.90810750907073,0,0,2.29363936875137,0,0,0.526768169550154,0.786839080455332,0,1.23360899399706,1.33749196312542,0,0.946895611469467,1.94826728407911,0.891283655081389,0.589211814949674,1.77227115666897,0.812411591295047,1.0247305578054,2.47112760363769,1.64437904603676,0.829050053357545,0.869409257205157,2.22429844743091,1.07016331235885,4.18142095219907,0.906474741580529,0.383220493601921,2.74901956386104,0.759059076058509,1.59282707162048,0.651083453856419,0.950452044448374,0.150575119077773,0.127986611154418,2.49861453104692,0.473554504088034,1.64225599384209,2.82249440514625,1.87208137048455,1.59306844271079,2.43806866313962,0.670700859703636,0.511450247374121,0.722878304769133,0.50133791063589,6.22840031531542,0,3.40644409211845,0.567208902984407,0.221729397462564,0.263504357079378,1.44076983047484,0,0.370784442784429,0.649094787309367,0.522389211897802,0.398873881556595,0.238490624305342,0,0,0,0.860234595106124,0,0.56530794192401,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.397227542439656,0.286836620748814,0,0,0,0.49333509683432,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0.206651562351531,0,0.989067717114227,0.910161361938026,0,0.336672227908132,0,0.277064115484183,0,0.612975591598039,0.901428353439581,0.226864366320042,0.179389635688862,0.213557388818567,0.211931901159562,0,0.206105058476878,0,0,0.337552664482532,0.0974370051611986,0.252433774244115,0.0920498986422993,0.969876340912871,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=4965 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-20bp_to_ENST00000383620,uc003nod.2_5end | |||
|description=CAGE_peak_1_at_HLA-H_5end | |||
|id=chr6:29855505..29855508,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.90e-15!140;CL:0002087!7.26e-15!119;CL:0002031!8.32e-15!124;CL:0000860!2.23e-13!45;CL:0002009!2.98e-13!65;CL:0000766!9.19e-13!76;CL:0000557!1.15e-12!71;CL:0002057!1.21e-12!42;CL:0002194!1.40e-12!63;CL:0000576!1.40e-12!63;CL:0000040!1.40e-12!63;CL:0000559!1.40e-12!63;CL:0000839!7.19e-12!70;CL:0000988!6.45e-08!182;CL:0002032!1.90e-07!165;CL:0000837!1.90e-07!165;CL:0000037!2.17e-07!172;CL:0000566!2.17e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-19;33!CL:0002057;2.73e-19;33!CL:0000473;5.02e-16;39!CL:0000234;5.02e-16;39!CL:0000576;3.56e-10;48!CL:0000766;1.10e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.85e-20,136;CL:0000473,2.78e-19,48;CL:0000234,2.78e-19,48;CL:0000860,7.67e-19,42;CL:0002057,7.67e-19,42;CL:0002087,8.09e-18,115;CL:0002031,1.71e-17,120;CL:0000766,1.29e-16,72;CL:0002009,5.97e-15,61;CL:0000557,1.16e-14,67;CL:0002194,1.48e-14,59;CL:0000576,1.48e-14,59;CL:0000040,1.48e-14,59;CL:0000559,1.48e-14,59;CL:0000839,7.02e-14,66;CL:0000988,4.75e-13,177;CL:0002032,5.55e-13,161;CL:0000837,5.55e-13,161;CL:0000037,7.07e-13,168;CL:0000763,4.61e-09,108;CL:0000049,4.61e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;5.66e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.02e-11!102;UBERON:0003061!1.02e-11!102;UBERON:0002193!2.93e-11!112;UBERON:0002371!1.69e-10!80;UBERON:0001474!5.63e-10!86;UBERON:0002405!2.86e-09!115;UBERON:0004765!5.40e-08!101;UBERON:0001434!5.40e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.61e-12,76;UBERON:0001474,8.45e-11,82;UBERON:0002390,6.98e-10,98;UBERON:0003061,6.98e-10,98;UBERON:0002405,1.11e-09,93;UBERON:0004765,6.58e-09,90;UBERON:0002193,6.03e-08,108;UBERON:0001434,4.88e-07,100 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.893922188854576,0,0,0,0,0,0,0.218441372130172,0.791300934685361,0,0,0.672325146451775,0,0,0.487932798790507,0.246242116153576,0,0,0.286235987131057,0.136874425072884,0,1.29902789771517,1.06730766284929,1.02324015707783,1.18009283054671,1.15148819429164,1.54816123316076,1.83884244895785,0.30120591877825,0.369754010166788,0.0774672005803016,0.142169232487422,0.880801318004542,1.66198622559563,1.40381113229099,0.651032612147555,0.447830948479849,0.971680998056939,0.77272670290256,1.45398238779565,0,1.21292030593908,1.62700325833979,2.46700732813095,2.16794459626573,3.45230870786581,1.7931249457037,1.6553756092201,1.37898272294647,1.93645405075148,0,2.44715041405386,1.63743690034707,1.12361742222542,3.36692281607993,0.320929027076094,3.19668562899521,2.96866170168044,2.19410023383795,0.426224750532694,2.03146467040009,1.70215567407342,1.86846674698672,2.00998932205395,1.0429658368404,2.38907729175628,3.63239701580021,1.10483290796269,3.48108626184973,0.633765858935825,0.425208599930087,1.04829322754188,1.79725809834392,2.10247649978109,0.16072558669708,0,0.99458338599545,0.91332076882317,5.27988733383968,1.63841583378639,0.889509253863555,0.426730222566507,0,1.14950487990897,1.32208974556972,1.90810750907073,0,0,2.29363936875137,0,0,0.526768169550154,0.786839080455332,0,1.23360899399706,1.33749196312542,0,0.946895611469467,1.94826728407911,0.891283655081389,0.589211814949674,1.77227115666897,0.812411591295047,1.0247305578054,2.47112760363769,1.64437904603676,0.829050053357545,0.869409257205157,2.22429844743091,1.07016331235885,4.18142095219907,0.906474741580529,0.383220493601921,2.74901956386104,0.759059076058509,1.59282707162048,0.651083453856419,0.950452044448374,0.150575119077773,0.127986611154418,2.49861453104692,0.473554504088034,1.64225599384209,2.82249440514625,1.87208137048455,1.59306844271079,2.43806866313962,0.670700859703636,0.511450247374121,0.722878304769133,0.50133791063589,6.22840031531542,0,3.40644409211845,0.567208902984407,0.221729397462564,0.263504357079378,1.44076983047484,0,0.370784442784429,0.649094787309367,0.522389211897802,0.398873881556595,0.238490624305342,0,0,0,0.860234595106124,0,0.56530794192401,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.397227542439656,0.286836620748814,0,0,0,0.49333509683432,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0.206651562351531,0,0.989067717114227,0.910161361938026,0,0.336672227908132,0,0.277064115484183,0,0.612975591598039,0.901428353439581,0.226864366320042,0.179389635688862,0.213557388818567,0.211931901159562,0,0.206105058476878,0,0,0.337552664482532,0.0974370051611986,0.252433774244115,0.0920498986422993,0.969876340912871,0,0,0.508681776931463,0.386521706326594,0.272746120590835,0.286804595389004,0.487894824518382,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0.643240938192885,1.38134921352481,0,0,0,0.168584690078102,0,0.441175890929576,0.217879444092406,0.237270619111097,0,0.196221465125346,0,0,0,0,0,7.60530208930985,1.96565443335525,0.590789906681404,0,1.72183813960359,0.171567810298526,0,0,0.904760751704678,0.462942225792648,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0.144366447761074,0.925971025153221,0.761016608938393,1.58040879591855,0.858486162094873,0.738651018262192,0.702012795417713,0.297262324577456,0,0,0.567100388969546,0.358234090811393,0.581267877027924,0,0,0.088048434013226,1.65862492432618,0.720599767084807,1.8936365013957,0.380987365753014,0,0,0,0.411309970813294,0.600686115687835,0.857479297891735,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0.823240336780769,0,0,0,0.602878754119172,0,0,4.86495122564762,1.00451418286425,2.10833939483032,0.479249710983165,1.14861935834114,0,0.144781306667579,0,0,0.112085143993527,2.36436912242313,2.58753089831421,1.54011643535698,0.508189248444927,0,0,0.167516265334349,0.637938751653163,2.24702107184155,0,2.48649308061621,0.49076596687656,0,0.271265023699736,1.24782516918484,1.96271887676878,0.946214490203608,1.17141414992713,0,0,0,0,0,3.5622281931914,0.391602314925481,0,1.86091223510599,0.647142602455851,1.06727557803444,2.12189300012382,0,0,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0,0.177561725313127,0.164254312027618,0.519254429183621,0.581051892299796,2.41718899183244,0.40101294060657,0.552485933615378,0.68888668898764,0,0.786746489756545,0.451199612907412,0.462092022626489,0,0,0.316654886678627,0,0.170093705276516,0,1.54227252690289,1.08378575017541,2.50844886927427,0,0,0.223874754722178,0,0.261435451024901,0.512900250232778,0,0,1.13345112812495,0.640986253728404,0.495056999523528,0.574265537996172,0,0,0.386682873168488,0.154048617114644,0,0.137836572484531,0.107420244868274,0.145016693914229,0.426133137080504,0.0890320356467374,0,0.384380134730212,2.80747967488085,1.21389337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| |||
|short_description=p1@HLA-H | |||
}} |
Revision as of 19:57, 13 September 2013
Short description: | p1@HLA-H |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HLA-H_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000383620, uc003nod.2_5end |
EntrezGene: | HLA-H |
HGNC: | 4965 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.85e-20 | 136 |
defensive cell | 2.78e-19 | 48 |
phagocyte | 2.78e-19 | 48 |
classical monocyte | 7.67e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.67e-19 | 42 |
nongranular leukocyte | 8.09e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 1.71e-17 | 120 |
myeloid leukocyte | 1.29e-16 | 72 |
macrophage dendritic cell progenitor | 5.97e-15 | 61 |
granulocyte monocyte progenitor cell | 1.16e-14 | 67 |
monopoietic cell | 1.48e-14 | 59 |
monocyte | 1.48e-14 | 59 |
monoblast | 1.48e-14 | 59 |
promonocyte | 1.48e-14 | 59 |
myeloid lineage restricted progenitor cell | 7.02e-14 | 66 |
hematopoietic cell | 4.75e-13 | 177 |
hematopoietic oligopotent progenitor cell | 5.55e-13 | 161 |
hematopoietic multipotent progenitor cell | 5.55e-13 | 161 |
hematopoietic stem cell | 7.07e-13 | 168 |
myeloid cell | 4.61e-09 | 108 |
common myeloid progenitor | 4.61e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.61e-12 | 76 |
bone element | 8.45e-11 | 82 |
hematopoietic system | 6.98e-10 | 98 |
blood island | 6.98e-10 | 98 |
immune system | 1.11e-09 | 93 |
skeletal element | 6.58e-09 | 90 |
hemolymphoid system | 6.03e-08 | 108 |
skeletal system | 4.88e-07 | 100 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.