FFCP PHASE1:Mm9::chr3:36348268..36348285,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=831|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:36348268..36348285,-|id=chr3:36348268..36348285,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002321,2.89e-12,70;CL:0000222,5.50e-12,7;CL:0000473,2.10e-10,7;CL:0000680,2.85e-10,6;CL:0000187,2.85e-10,6;CL:0000056,2.85e-10,6;CL:0002194,1.48e-08,4;CL:0000766,1.48e-08,4;CL:0000234,1.48e-08,4;CL:0000576,1.48e-08,4;CL:0000235,1.48e-08,4;CL:0000864,1.48e-08,4;CL:0002009,1.48e-08,4;CL:0000040,1.48e-08,4;CL:0000559,1.48e-08,4;CL:0000066,3.18e-07,25;CL:0000068,3.20e-07,3;CL:0002202,3.20e-07,3;CL:0000069,3.20e-07,3;CL:0002632,3.20e-07,3;CL:0002368,3.20e-07,3;CL:0000307,3.20e-07,3;CL:0000377,3.20e-07,3;CL:0000034,4.25e-07,97;CL:0000557,9.55e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0003126,3.20e-07,3;UBERON:0001005,3.20e-07,3;UBERON:0007196,3.20e-07,3;UBERON:0001558,3.20e-07,3;UBERON:0000010,4.26e-07,11;UBERON:0002204,7.44e-07,32|phase1_expression=0.640595388419176,1.74487703819681,1.81999695755814,0,0,1.00727563147134,1.86890112476421,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0.262261207256992,0,0,0,0.157731082679119,0,0.42438965179803,0.680346321208558,0.0992909512008853,0,3.83981814704176,2.75291137280604,0.57423196411502,4.73838195774982,3.66301095566011,0,0,1.99557459589774,0,0,0,0,0,0,0.837063261473815,0.7813353445238,0,0,0.683045484958446,0.485510353031154,2.01434908760924,1.82478476195126,1.10128051297009,0,0.218025156380447,1.09843091367236,0.388859798148567,1.1198913730029,1.43752564364972,0.167782606057736,0,0.336093799142464,2.31533492432352,1.43266719969378,1.03134418455488,0,0,0,1.0165335962074,0.889294796111139,1.3498495759221,1.97773272513395,0.7104801149461,1.49800055259202,1.92109152660777,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0.279182999001381,0,0.30559649555362,0.294628585473668,0.142371680799103,0,1.51452386666368,0.453429360640713,2.31891590961342,0,1.3599426674155,0,0,0.448026887097336,0,1.1930122580464,3.11743205523443,3.5333957451034,0.563373679106722,0,0,0,4.97929394325792,2.78695852022608,5.05524445014783,0.34255163915718,0,0.445326417194474,0.520455980298408,0.304465478312141,0.461230994512117,0.60289056221049,0.823120949949934,0.753999547978053,0.494389935468748,0.578397427679647,0.884610551949874,0.323533699894818,0,0.484875253135222,0,0.292780797011547,0,0.255457055208591,0.958520996047362,0.599902730993408,0.635351135365324,0.149790639404823,0,0.125654352112864,0.173824320192276,0,0,0,0.509196819251581,0.373220911830279,0.505445516867349,0.210441855886474,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,0.136072998302656,0,0.0937017245597288,0,0,0,0,0.219195732427575,0.278047249225598,0.348252166522167,0.205782136407943,0,0.702213187313235,1.02939162845886,0.568326998791185,0.828503090142008,0.234526059981096,0.720248245844059,0.23674473558521,0.196764231747404,0.154267112887378,0,0,0.116765342367169,0.493679549740441,0,0,0.584799949701329,0,0,0.210289948564127,0,0,0,0.639864751605702,0,0.257734922644187,0.201683524623343,0.444756087689741,0.190225626112559,0,0.329397909448022,1.00534083520108,0,0,0,0.216138049874694,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0.210407459670956,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0.296452627087149,0,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0,1.43768206527355,0,0.312037673114561,0,0,0.482443521363367,0.739012760666419,0.37898282354097,0.162964976442026,0.509235257325564,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0,0.664394068946325,0.159454768657487,0.327726629431476,0.172684981865896,0.723245292907558,6.03165135757089,14.6854534631052,0,0,0,0.234423373184406,0.655739781506702,0.757412781613119,1.57754109708128,1.17131623288992,1.29254038639679,1.91175038362042,1.33679204449436,0.283076530788832,0.404810701674894,2.33804686329049,0.395287777946524,0.321321316421807,0.425820255624806,0,0.488660878060728,0.494910368917606,0,0,0.302323556964751,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,0.680879211507576,0.18006109403131,0.388076051348264,0.214337035031592,1.06404140185364,0.535106452806212,0.164549020602121,0.608929898229199,0.469343416127421,2.1183207086382,0.220528398054962,0.32977250588296,0.968786560175433,0.120625849856312,0.477489376012546,0.656563598980245,0,0.370850604021019,0.170870880797853,0.412773735926445,0,0.188368457004691,0.136694227721025,0,0.679913719975421,0.419854356970974,0.552799895217695,0.954670618015114,0.158167996790568,0.406638934253697,0,0,0,0.539457385539283,0,0.785267825952089,0.129614973291793,0,0,0.598066184175915,0.165458490457098,0.194451188344048,1.6790777052105,0.168956125490778,0.234714477291508,0.2604087696879,0.104859344425711,0,0.288030006257865,0.316011120628178,0.405450430580328,1.129820528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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=831 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:36348268..36348285,- | |||
|id=chr3:36348268..36348285,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.89e-12,70;CL:0000222,5.50e-12,7;CL:0000473,2.10e-10,7;CL:0000680,2.85e-10,6;CL:0000187,2.85e-10,6;CL:0000056,2.85e-10,6;CL:0002194,1.48e-08,4;CL:0000766,1.48e-08,4;CL:0000234,1.48e-08,4;CL:0000576,1.48e-08,4;CL:0000235,1.48e-08,4;CL:0000864,1.48e-08,4;CL:0002009,1.48e-08,4;CL:0000040,1.48e-08,4;CL:0000559,1.48e-08,4;CL:0000066,3.18e-07,25;CL:0000068,3.20e-07,3;CL:0002202,3.20e-07,3;CL:0000069,3.20e-07,3;CL:0002632,3.20e-07,3;CL:0002368,3.20e-07,3;CL:0000307,3.20e-07,3;CL:0000377,3.20e-07,3;CL:0000034,4.25e-07,97;CL:0000557,9.55e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,3.20e-07,3;UBERON:0001005,3.20e-07,3;UBERON:0007196,3.20e-07,3;UBERON:0001558,3.20e-07,3;UBERON:0000010,4.26e-07,11;UBERON:0002204,7.44e-07,32 | |||
|phase1_expression=0.640595388419176,1.74487703819681,1.81999695755814,0,0,1.00727563147134,1.86890112476421,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0.262261207256992,0,0,0,0.157731082679119,0,0.42438965179803,0.680346321208558,0.0992909512008853,0,3.83981814704176,2.75291137280604,0.57423196411502,4.73838195774982,3.66301095566011,0,0,1.99557459589774,0,0,0,0,0,0,0.837063261473815,0.7813353445238,0,0,0.683045484958446,0.485510353031154,2.01434908760924,1.82478476195126,1.10128051297009,0,0.218025156380447,1.09843091367236,0.388859798148567,1.1198913730029,1.43752564364972,0.167782606057736,0,0.336093799142464,2.31533492432352,1.43266719969378,1.03134418455488,0,0,0,1.0165335962074,0.889294796111139,1.3498495759221,1.97773272513395,0.7104801149461,1.49800055259202,1.92109152660777,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0.279182999001381,0,0.30559649555362,0.294628585473668,0.142371680799103,0,1.51452386666368,0.453429360640713,2.31891590961342,0,1.3599426674155,0,0,0.448026887097336,0,1.1930122580464,3.11743205523443,3.5333957451034,0.563373679106722,0,0,0,4.97929394325792,2.78695852022608,5.05524445014783,0.34255163915718,0,0.445326417194474,0.520455980298408,0.304465478312141,0.461230994512117,0.60289056221049,0.823120949949934,0.753999547978053,0.494389935468748,0.578397427679647,0.884610551949874,0.323533699894818,0,0.484875253135222,0,0.292780797011547,0,0.255457055208591,0.958520996047362,0.599902730993408,0.635351135365324,0.149790639404823,0,0.125654352112864,0.173824320192276,0,0,0,0.509196819251581,0.373220911830279,0.505445516867349,0.210441855886474,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,0.136072998302656,0,0.0937017245597288,0,0,0,0,0.219195732427575,0.278047249225598,0.348252166522167,0.205782136407943,0,0.702213187313235,1.02939162845886,0.568326998791185,0.828503090142008,0.234526059981096,0.720248245844059,0.23674473558521,0.196764231747404,0.154267112887378,0,0,0.116765342367169,0.493679549740441,0,0,0.584799949701329,0,0,0.210289948564127,0,0,0,0.639864751605702,0,0.257734922644187,0.201683524623343,0.444756087689741,0.190225626112559,0,0.329397909448022,1.00534083520108,0,0,0,0.216138049874694,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0.210407459670956,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0.296452627087149,0,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0,1.43768206527355,0,0.312037673114561,0,0,0.482443521363367,0.739012760666419,0.37898282354097,0.162964976442026,0.509235257325564,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0,0.664394068946325,0.159454768657487,0.327726629431476,0.172684981865896,0.723245292907558,6.03165135757089,14.6854534631052,0,0,0,0.234423373184406,0.655739781506702,0.757412781613119,1.57754109708128,1.17131623288992,1.29254038639679,1.91175038362042,1.33679204449436,0.283076530788832,0.404810701674894,2.33804686329049,0.395287777946524,0.321321316421807,0.425820255624806,0,0.488660878060728,0.494910368917606,0,0,0.302323556964751,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,0.680879211507576,0.18006109403131,0.388076051348264,0.214337035031592,1.06404140185364,0.535106452806212,0.164549020602121,0.608929898229199,0.469343416127421,2.1183207086382,0.220528398054962,0.32977250588296,0.968786560175433,0.120625849856312,0.477489376012546,0.656563598980245,0,0.370850604021019,0.170870880797853,0.412773735926445,0,0.188368457004691,0.136694227721025,0,0.679913719975421,0.419854356970974,0.552799895217695,0.954670618015114,0.158167996790568,0.406638934253697,0,0,0,0.539457385539283,0,0.785267825952089,0.129614973291793,0,0,0.598066184175915,0.165458490457098,0.194451188344048,1.6790777052105,0.168956125490778,0.234714477291508,0.2604087696879,0.104859344425711,0,0.288030006257865,0.316011120628178,0.405450430580328,1.1298205288131,0.389762468933385,0.179026695667481,0.198681354781265,0.240390899039938,0,0.201932899896295,0.15241361331,0,0.292373642219257,0.288635524920988,0.350630706544707,0.453460767230423,0.665957860122194,1.07656627931371,2.85403847818933,0,0,0.549454872801795,0.428736758158132,0,0,0,0,0,0,0,0,0,0,1.03552062350364,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0.187283014939765,0.0640251524048693,0.17230640686684,0,0.115884325944855,0,0,0.294397840268795,0,0.177475806159338,0.238436189947321,0.436039249896986,0.376437521661322,0.169229215783353,0,0.526139422875686,0.679020569229309,0,0.118635018124174,0.197008964751127,0.818462086339379,0.154936841185966,0.192906610981141,0.249810577937946,0,0.214871054048298,0.956441660344217,0.220591419119515,1.39120701372253 | |||
|short_description=p@chr3:36348268..36348285,- | |||
}} |
Revision as of 02:10, 14 September 2013
Short description: | p@chr3:36348268..36348285, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:36348268..36348285, - |
Coexpression cluster: | MCL_coexpression_mm9:831 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.89e-12 | 70 |
mesodermal cell | 5.50e-12 | 7 |
defensive cell | 2.10e-10 | 7 |
muscle precursor cell | 2.85e-10 | 6 |
muscle cell | 2.85e-10 | 6 |
myoblast | 2.85e-10 | 6 |
monopoietic cell | 1.48e-08 | 4 |
myeloid leukocyte | 1.48e-08 | 4 |
phagocyte | 1.48e-08 | 4 |
monocyte | 1.48e-08 | 4 |
macrophage | 1.48e-08 | 4 |
tissue-resident macrophage | 1.48e-08 | 4 |
macrophage dendritic cell progenitor | 1.48e-08 | 4 |
monoblast | 1.48e-08 | 4 |
promonocyte | 1.48e-08 | 4 |
epithelial cell | 3.18e-07 | 25 |
duct epithelial cell | 3.20e-07 | 3 |
epithelial cell of tracheobronchial tree | 3.20e-07 | 3 |
branched duct epithelial cell | 3.20e-07 | 3 |
epithelial cell of lower respiratory tract | 3.20e-07 | 3 |
respiratory epithelial cell | 3.20e-07 | 3 |
tracheal epithelial cell | 3.20e-07 | 3 |
tracheoblast | 3.20e-07 | 3 |
stem cell | 4.25e-07 | 97 |
granulocyte monocyte progenitor cell | 9.55e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
trachea | 3.20e-07 | 3 |
respiratory airway | 3.20e-07 | 3 |
tracheobronchial tree | 3.20e-07 | 3 |
lower respiratory tract | 3.20e-07 | 3 |
peripheral nervous system | 4.26e-07 | 11 |
musculoskeletal system | 7.44e-07 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.