FFCP PHASE1:Mm9::chr4:44180452..44180480,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=73469|HGNC=|MCL_coexpression_id=0|UniProt=Q8BI21|association_with_transcript=0bp_to_ENSMUST00000098098_5end|description=CAGE_peak_12_at_Rnf38_5end|id=chr4:44180452..44180480,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.21e-10,29;UBERON:0005057,2.21e-10,29;UBERON:0002370,4.39e-10,23;UBERON:0000974,4.39e-10,23;UBERON:0004807,4.39e-10,23;UBERON:0005058,4.39e-10,23;UBERON:0003351,4.39e-10,23;UBERON:0009113,4.39e-10,23;UBERON:0003295,4.39e-10,23;UBERON:0009722,4.39e-10,23;UBERON:0005562,4.39e-10,23;UBERON:0007690,4.39e-10,23;UBERON:0000072,1.48e-09,27;UBERON:0006562,1.57e-09,24;UBERON:0003408,1.57e-09,24;UBERON:0001557,1.57e-09,24;UBERON:0001042,1.57e-09,24;UBERON:0008814,1.57e-09,24;UBERON:0009145,1.57e-09,24;UBERON:0000077,3.80e-09,35;UBERON:0002193,4.82e-09,48;UBERON:0002405,4.82e-09,48;UBERON:0002390,1.08e-08,45;UBERON:0003061,1.08e-08,45|phase1_expression=0,0,0,0,0,0.503637815735669,0.467225281191051,0.387369970324729,0.140788722151667,0.234064526321993,0.171217968225505,0.159544317990673,2.05440875917447,0.786783621770977,3.33109761815663,0.809901069559304,2.79824751251259,0.157731082679119,0.274228867211478,0,9.43980520676875,2.18440092641948,1.56719873483361,0.159992422793407,0.22940928106717,0.57423196411502,0,0.215471232685889,0,0.504060259519861,0.221730510655305,0,0.61506478758457,0,0.577703239502549,0.498703936075477,0.408338712524738,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0.485510353031154,0.125896817975577,0.304130793658544,0.367093504323363,0,0.218025156380447,0,0,0,0,0.167782606057736,0,2.35265659399725,0,0,0.515672092277442,0.404632921719196,0,0.633831403506179,0.677689064138264,0,0,0,0.7104801149461,0,0,1.24427534770173,0.810035629990144,0.420649922702764,0,0,0.367472397644862,0.862609239164127,1.83843757322004,0,0.127687338085188,0,0.131886287730194,0.365950574409639,0.52091337055676,0,0,0.30559649555362,0,0.142371680799103,0,0.151452386666368,0.226714680320357,0,0,0,0,0,0,1.82577746171277,0.170430322578058,0,0,0.14084341977668,0,0,0,0.216491041011214,0.760079596425296,1.51657333504435,1.7127581957859,2.33044095282455,0.148442139064825,0.173485326766136,0,0,0,0,0.251333182659351,0,0.289198713839823,0.884610551949874,0.161766849947409,1.10420759230197,0.969750506270444,1.86391761218122,0,0,0.766371165625774,0.958520996047362,0.599902730993408,1.27070227073065,0.149790639404823,0,0.125654352112864,0,0,0,0.162241263067758,0.305518091550949,0.746441823660558,1.76905930903572,0.210441855886474,0.910843100738926,0.459804208866946,0.360124259610698,0.60281927134286,0.612328492361951,0.12811372028485,0.187403449119458,0.258703370739016,0.215567992932842,1.32374256117473,0.703804496655795,0.219195732427575,0.834141747676794,1.0447564995665,0,0.199034266818493,0,2.31613116403244,0.568326998791185,0.414251545071004,0.469052119962192,0.540186184383045,0.23674473558521,0,0.617068451549513,0,0.268273401399619,0.233530684734339,0.16455984991348,0,0.0810688095458557,0,0,0.268412837520744,0,0.205809224758569,0.330418782983798,0.264450566663544,0.426576501070468,0.696710015581316,0.515469845288373,0,0.22237804384487,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,0,0,0.648414149624083,0,0.379335801906163,0.913988100877831,1.1270773567308,0.203651327845314,0.581857461502877,0.911765658574141,0.252946148497029,0.147610147979602,0,0.370191491765402,0,1.33476084572875,0.786235980452812,0.899448449539415,1.01430060694251,1.20588579876208,0.25462585178142,1.15078454980324,0.486405680325106,0.549122826376163,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0.554259570499814,0.568474235311454,0.488894929326078,0.509235257325564,0.469380496577004,0.502518772325447,0.238043640886014,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0.518054945597687,0,0,0,0.491764273019036,0.275936746304732,0,0,0,0,0.94652465824877,2.34263246577983,1.07711698866399,1.43381278771531,1.11399337041197,0.283076530788832,1.21443210502468,0,0.395287777946524,0,0.709700426041343,0,0.162886959353576,0.659880491890142,0,0.728341908464944,0,0.188605079755898,0.295301892880773,0,0,1.09060118843252,1.06949213515416,0.316036757935816,0,0,0.340439605753788,0.36012218806262,0.258717367565509,1.28602221018955,0.886701168211368,0.356737635204141,0.164549020602121,0,0.704015124191131,1.27099242518292,0.220528398054962,1.15420377059036,0.645857706783622,0.663442174209714,0.238744688006273,1.47726809770555,0.582961673259701,0,2.05045056957423,0.619160603889667,0.925972636848558,0.753473828018764,2.87057878214153,0.915112692826091,1.5298058699447,0.559805809294632,0.690999869022119,0,0.949007980743406,0.609958401380546,0.432021363287205,0.836353184057875,0.87345025498471,0.539457385539283,0.826534557253359,0.523511883968059,0.259229946583586,0,76.0985467223657,0.598066184175915,0.827292452285488,0.19445118834404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| ||
|EntrezGene=73469 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q8BI21 | |||
|association_with_transcript=0bp_to_ENSMUST00000098098_5end | |||
|description=CAGE_peak_12_at_Rnf38_5end | |||
|id=chr4:44180452..44180480,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.21e-10,29;UBERON:0005057,2.21e-10,29;UBERON:0002370,4.39e-10,23;UBERON:0000974,4.39e-10,23;UBERON:0004807,4.39e-10,23;UBERON:0005058,4.39e-10,23;UBERON:0003351,4.39e-10,23;UBERON:0009113,4.39e-10,23;UBERON:0003295,4.39e-10,23;UBERON:0009722,4.39e-10,23;UBERON:0005562,4.39e-10,23;UBERON:0007690,4.39e-10,23;UBERON:0000072,1.48e-09,27;UBERON:0006562,1.57e-09,24;UBERON:0003408,1.57e-09,24;UBERON:0001557,1.57e-09,24;UBERON:0001042,1.57e-09,24;UBERON:0008814,1.57e-09,24;UBERON:0009145,1.57e-09,24;UBERON:0000077,3.80e-09,35;UBERON:0002193,4.82e-09,48;UBERON:0002405,4.82e-09,48;UBERON:0002390,1.08e-08,45;UBERON:0003061,1.08e-08,45 | |||
|phase1_expression=0,0,0,0,0,0.503637815735669,0.467225281191051,0.387369970324729,0.140788722151667,0.234064526321993,0.171217968225505,0.159544317990673,2.05440875917447,0.786783621770977,3.33109761815663,0.809901069559304,2.79824751251259,0.157731082679119,0.274228867211478,0,9.43980520676875,2.18440092641948,1.56719873483361,0.159992422793407,0.22940928106717,0.57423196411502,0,0.215471232685889,0,0.504060259519861,0.221730510655305,0,0.61506478758457,0,0.577703239502549,0.498703936075477,0.408338712524738,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0.485510353031154,0.125896817975577,0.304130793658544,0.367093504323363,0,0.218025156380447,0,0,0,0,0.167782606057736,0,2.35265659399725,0,0,0.515672092277442,0.404632921719196,0,0.633831403506179,0.677689064138264,0,0,0,0.7104801149461,0,0,1.24427534770173,0.810035629990144,0.420649922702764,0,0,0.367472397644862,0.862609239164127,1.83843757322004,0,0.127687338085188,0,0.131886287730194,0.365950574409639,0.52091337055676,0,0,0.30559649555362,0,0.142371680799103,0,0.151452386666368,0.226714680320357,0,0,0,0,0,0,1.82577746171277,0.170430322578058,0,0,0.14084341977668,0,0,0,0.216491041011214,0.760079596425296,1.51657333504435,1.7127581957859,2.33044095282455,0.148442139064825,0.173485326766136,0,0,0,0,0.251333182659351,0,0.289198713839823,0.884610551949874,0.161766849947409,1.10420759230197,0.969750506270444,1.86391761218122,0,0,0.766371165625774,0.958520996047362,0.599902730993408,1.27070227073065,0.149790639404823,0,0.125654352112864,0,0,0,0.162241263067758,0.305518091550949,0.746441823660558,1.76905930903572,0.210441855886474,0.910843100738926,0.459804208866946,0.360124259610698,0.60281927134286,0.612328492361951,0.12811372028485,0.187403449119458,0.258703370739016,0.215567992932842,1.32374256117473,0.703804496655795,0.219195732427575,0.834141747676794,1.0447564995665,0,0.199034266818493,0,2.31613116403244,0.568326998791185,0.414251545071004,0.469052119962192,0.540186184383045,0.23674473558521,0,0.617068451549513,0,0.268273401399619,0.233530684734339,0.16455984991348,0,0.0810688095458557,0,0,0.268412837520744,0,0.205809224758569,0.330418782983798,0.264450566663544,0.426576501070468,0.696710015581316,0.515469845288373,0,0.22237804384487,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,0,0,0.648414149624083,0,0.379335801906163,0.913988100877831,1.1270773567308,0.203651327845314,0.581857461502877,0.911765658574141,0.252946148497029,0.147610147979602,0,0.370191491765402,0,1.33476084572875,0.786235980452812,0.899448449539415,1.01430060694251,1.20588579876208,0.25462585178142,1.15078454980324,0.486405680325106,0.549122826376163,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0.554259570499814,0.568474235311454,0.488894929326078,0.509235257325564,0.469380496577004,0.502518772325447,0.238043640886014,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0.518054945597687,0,0,0,0.491764273019036,0.275936746304732,0,0,0,0,0.94652465824877,2.34263246577983,1.07711698866399,1.43381278771531,1.11399337041197,0.283076530788832,1.21443210502468,0,0.395287777946524,0,0.709700426041343,0,0.162886959353576,0.659880491890142,0,0.728341908464944,0,0.188605079755898,0.295301892880773,0,0,1.09060118843252,1.06949213515416,0.316036757935816,0,0,0.340439605753788,0.36012218806262,0.258717367565509,1.28602221018955,0.886701168211368,0.356737635204141,0.164549020602121,0,0.704015124191131,1.27099242518292,0.220528398054962,1.15420377059036,0.645857706783622,0.663442174209714,0.238744688006273,1.47726809770555,0.582961673259701,0,2.05045056957423,0.619160603889667,0.925972636848558,0.753473828018764,2.87057878214153,0.915112692826091,1.5298058699447,0.559805809294632,0.690999869022119,0,0.949007980743406,0.609958401380546,0.432021363287205,0.836353184057875,0.87345025498471,0.539457385539283,0.826534557253359,0.523511883968059,0.259229946583586,0,76.0985467223657,0.598066184175915,0.827292452285488,0.194451188344048,0.387479470433193,0.844780627453891,0.352071715937262,0.13020438484395,0.524296722128554,1.69108884578204,12.0972602628303,2.8441000856536,0.608175645870493,0.821687657318618,1.29920822977795,1.79026695667481,2.38417625737518,1.56254084375959,1.18151621739662,1.51449674922221,1.752756553065,2.11734988787365,1.16949456887703,1.34696578296461,1.8700304349051,0,0.665957860122194,0.269141569828427,0.671538465456314,0.772758376128762,0.375364950902364,0.183151624267265,0.428736758158132,1.00314420807073,0.564751842617067,0.460325236507177,0.572895513439397,0,0.685082519770642,0,0,0,0,0,0.518936737920883,0.798049746802062,0.853668028770671,0.729320151204882,0.628839487883947,0.551530525350042,0,0.412070114477788,0,0.252697211763798,0.760437899670719,0.565879024158229,0.187283014939765,0.384150914429216,0.34461281373368,0.952587382566147,0.347652977834566,0.192909220463705,0,0.441596760403192,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.0941093804153306,0.338458431566706,0.365855945745545,0.78920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| |||
|short_description=p12@Rnf38 | |||
}} |
Revision as of 05:03, 14 September 2013
Short description: | p12@Rnf38 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Rnf38_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000098098_5end |
EntrezGene: | Rnf38 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.21e-10 | 29 |
immune organ | 2.21e-10 | 29 |
thymus | 4.39e-10 | 23 |
neck | 4.39e-10 | 23 |
respiratory system epithelium | 4.39e-10 | 23 |
hemolymphoid system gland | 4.39e-10 | 23 |
pharyngeal epithelium | 4.39e-10 | 23 |
thymic region | 4.39e-10 | 23 |
pharyngeal gland | 4.39e-10 | 23 |
entire pharyngeal arch endoderm | 4.39e-10 | 23 |
thymus primordium | 4.39e-10 | 23 |
early pharyngeal endoderm | 4.39e-10 | 23 |
segment of respiratory tract | 1.48e-09 | 27 |
pharynx | 1.57e-09 | 24 |
gland of gut | 1.57e-09 | 24 |
upper respiratory tract | 1.57e-09 | 24 |
chordate pharynx | 1.57e-09 | 24 |
pharyngeal arch system | 1.57e-09 | 24 |
pharyngeal region of foregut | 1.57e-09 | 24 |
mixed endoderm/mesoderm-derived structure | 3.80e-09 | 35 |
hemolymphoid system | 4.82e-09 | 48 |
immune system | 4.82e-09 | 48 |
hematopoietic system | 1.08e-08 | 45 |
blood island | 1.08e-08 | 45 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.