FFCP PHASE1:Mm9::chr4:86221644..86221655,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68441|HGNC=|UniProt=Q80X95|association_with_transcript=67bp_to_ENSMUST00000091064,NM_178376,uc008tlw.2_5end|description=CAGE_peak_4_at_Rraga_5end|id=chr4:86221644..86221655,+|ontology_enrichment_celltype=CL:0000548!5.25e-21!115;CL:0000004!5.25e-21!115;CL:0000255!5.25e-21!115;CL:0000144!1.44e-20!121;CL:0000012!1.44e-20!121;CL:0002371!2.08e-20!118;CL:0000034!4.58e-20!97;CL:0000723!8.26e-19!91;CL:0000048!8.26e-19!91;CL:0000055!2.09e-14!50;CL:0002321!1.83e-12!70;CL:0000220!1.83e-12!70;CL:0002319!1.89e-12!43;CL:0000221!2.73e-12!44;CL:0000133!2.73e-12!44;CL:0000393!3.43e-12!39;CL:0000211!3.43e-12!39;CL:0000219!2.56e-10!54;CL:0000540!3.59e-10!33;CL:0000047!3.59e-10!33;CL:0000031!3.59e-10!33;CL:0000404!3.59e-10!33;CL:0002320!2.75e-08!46;CL:0000134!2.75e-08!46|ontology_enrichment_celltype_v019_2=CL:0000034,3.63e-20,97;CL:0000723,6.81e-19,91;CL:0000048,6.81e-19,91;CL:0002321,1.73e-12,70;CL:0002319,1.77e-12,43;CL:0000221,2.56e-12,44;CL:0000133,2.56e-12,44;CL:0000393,3.28e-12,39;CL:0000211,3.28e-12,39;CL:0000219,1.28e-10,54;CL:0000540,3.67e-10,33;CL:0000047,3.67e-10,33;CL:0000031,3.67e-10,33;CL:0000404,3.67e-10,33;CL:0002320,1.50e-08,46;CL:0000134,1.50e-08,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.50e-12!75;UBERON:0001016!3.50e-12!75;UBERON:0001017!8.46e-12!73;UBERON:0005743!8.46e-12!73;UBERON:0002384!2.75e-08!46;UBERON:0004121!7.17e-08!102;UBERON:0000924!7.17e-08!102;UBERON:0006601!7.17e-08!102|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.51e-12,75;UBERON:0001017,8.58e-12,73;UBERON:0004121,1.10e-08,95;UBERON:0000924,1.10e-08,95;UBERON:0006601,1.10e-08,95;UBERON:0002384,1.50e-08,46;UBERON:0002346,8.96e-07,64;UBERON:0003075,8.96e-07,64;UBERON:0007284,8.96e-07,64|phase1_expression=3.84357233051505,1.04692622291808,1.81999695755814,0.90739263392049,1.50268718983904,0.839396359559449,2.56973904655078,1.54947988129892,4.92760527530834,5.61754863172784,3.25314139628459,1.35612670292072,1.02720437958723,1.22388563386596,2.99798785634096,3.44207954562704,3.49780939064073,5.0473946457318,5.21034847701807,5.51706547337439,1.53077922271926,3.57447424323187,2.87319768052829,1.75991665072747,1.83527424853736,1.14846392823004,1.29228598847722,1.07735616342945,0.380046838912748,0.756090389279792,1.33038306393183,1.27006134691926,6.1506478758457,0,2.02196133825892,1.16364251750945,0.816677425049476,0.837063261473815,3.1253413780952,1.0470474879476,1.76469446409304,3.41522742479223,0.485510353031154,3.39921408534059,2.73717714292689,1.65192076945513,2.34717403304412,4.36050312760893,3.07560655828261,3.88859798148567,2.65974201088189,2.87505128729943,5.03347818173209,6.5282592781021,1.00828139742739,7.71778308107841,3.72493471920384,6.18806510732931,3.64169629547276,4.23192783417626,2.53532561402472,3.04960078862219,2.66788438833342,2.2497492932035,3.9554654502679,3.5524005747305,2.99600110518405,1.92109152660777,1.76272340924412,2.70011876663381,0.841299845405528,6.85562362569129,8.1721360152097,1.10241719293459,1.34183659425531,2.75765635983006,3.30347642998166,3.19218345212969,3.84016333140609,3.42904348098504,4.94033275453012,2.6045668527838,3.07101298901519,2.25105044012672,2.59757021220577,5.59794312399969,3.55929201997757,2.98239113320481,2.87759534666099,2.26714680320357,3.47837386442013,1.72084775396277,7.47968467078526,3.77792234146472,1.29955283489534,1.34408066129201,0.842666520790511,2.21559419351475,1.81850203222008,2.12003744706204,1.69012103732017,2.56652954828636,0,0,5.84525810730278,5.06719730950197,8.59391556525132,1.02765491747154,1.29468941823586,1.1875371125186,1.56136794089522,1.52232739156071,2.53677046981664,2.26083960828934,1.41106448562846,1.13099932196708,1.73036477414062,1.44599356919912,1.76922110389975,0.323533699894818,1.10420759230197,2.42437626567611,0,1.17112318804619,1.67557365450764,0.510914110417183,4.43315960671905,4.79922184794726,3.43089613097275,1.64769703345305,1.37250180845588,1.00523481690292,1.39059456153821,0.255715457330331,3.1168206683934,1.1356888414743,1.52759045775474,1.11966273549084,0.505445516867349,0.210441855886474,1.56144531555244,2.5289231487682,1.44049703844279,1.05493372485001,1.97305847538851,3.20284300712124,3.09215691047105,2.06962696591213,3.01795190105979,1.89106080167819,2.46331573829528,1.31517439456545,1.66828349535359,1.74126083261083,0.61734640922383,2.18937693500343,1.40442637462647,3.86021860672073,2.84163499395593,3.93538967817454,2.11073453982987,1.62055855314913,3.07768156260773,0.590292695242212,1.23413690309903,0.697601834251224,0.804820204198858,0.583826711835847,0.987359099480883,0.656669856316381,0.405344047729279,0.584799949701329,0.439100230582101,1.07365135008297,1.68231958851302,0.720332286654991,1.32167513193519,0.793351699990633,2.34617075588757,2.78684006232526,3.35055399437443,3.02525286935014,2.44615848229357,1.33157938278791,1.89811624617805,1.4822905925161,1.00534083520108,0.596869416123452,0.779856348476481,1.79763881730844,0.432276099749388,1.194847639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| ||
|EntrezGene=68441 | |||
|HGNC= | |||
|UniProt=Q80X95 | |||
|association_with_transcript=67bp_to_ENSMUST00000091064,NM_178376,uc008tlw.2_5end | |||
|description=CAGE_peak_4_at_Rraga_5end | |||
|id=chr4:86221644..86221655,+ | |||
|ontology_enrichment_celltype=CL:0000548!5.25e-21!115;CL:0000004!5.25e-21!115;CL:0000255!5.25e-21!115;CL:0000144!1.44e-20!121;CL:0000012!1.44e-20!121;CL:0002371!2.08e-20!118;CL:0000034!4.58e-20!97;CL:0000723!8.26e-19!91;CL:0000048!8.26e-19!91;CL:0000055!2.09e-14!50;CL:0002321!1.83e-12!70;CL:0000220!1.83e-12!70;CL:0002319!1.89e-12!43;CL:0000221!2.73e-12!44;CL:0000133!2.73e-12!44;CL:0000393!3.43e-12!39;CL:0000211!3.43e-12!39;CL:0000219!2.56e-10!54;CL:0000540!3.59e-10!33;CL:0000047!3.59e-10!33;CL:0000031!3.59e-10!33;CL:0000404!3.59e-10!33;CL:0002320!2.75e-08!46;CL:0000134!2.75e-08!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,3.63e-20,97;CL:0000723,6.81e-19,91;CL:0000048,6.81e-19,91;CL:0002321,1.73e-12,70;CL:0002319,1.77e-12,43;CL:0000221,2.56e-12,44;CL:0000133,2.56e-12,44;CL:0000393,3.28e-12,39;CL:0000211,3.28e-12,39;CL:0000219,1.28e-10,54;CL:0000540,3.67e-10,33;CL:0000047,3.67e-10,33;CL:0000031,3.67e-10,33;CL:0000404,3.67e-10,33;CL:0002320,1.50e-08,46;CL:0000134,1.50e-08,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.50e-12!75;UBERON:0001016!3.50e-12!75;UBERON:0001017!8.46e-12!73;UBERON:0005743!8.46e-12!73;UBERON:0002384!2.75e-08!46;UBERON:0004121!7.17e-08!102;UBERON:0000924!7.17e-08!102;UBERON:0006601!7.17e-08!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.51e-12,75;UBERON:0001017,8.58e-12,73;UBERON:0004121,1.10e-08,95;UBERON:0000924,1.10e-08,95;UBERON:0006601,1.10e-08,95;UBERON:0002384,1.50e-08,46;UBERON:0002346,8.96e-07,64;UBERON:0003075,8.96e-07,64;UBERON:0007284,8.96e-07,64 | |||
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| |||
|short_description=p4@Rraga | |||
}} |
Revision as of 05:32, 14 September 2013
Short description: | p4@Rraga |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rraga_5end |
Coexpression cluster: | NA |
Association with transcript: | 67bp_to_ENSMUST00000091064, NM_178376, uc008tlw.2_5end |
EntrezGene: | Rraga |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 3.63e-20 | 97 |
somatic stem cell | 6.81e-19 | 91 |
multi fate stem cell | 6.81e-19 | 91 |
embryonic cell | 1.73e-12 | 70 |
neural cell | 1.77e-12 | 43 |
ectodermal cell | 2.56e-12 | 44 |
neurectodermal cell | 2.56e-12 | 44 |
electrically responsive cell | 3.28e-12 | 39 |
electrically active cell | 3.28e-12 | 39 |
motile cell | 1.28e-10 | 54 |
neuron | 3.67e-10 | 33 |
neuronal stem cell | 3.67e-10 | 33 |
neuroblast | 3.67e-10 | 33 |
electrically signaling cell | 3.67e-10 | 33 |
connective tissue cell | 1.50e-08 | 46 |
mesenchymal cell | 1.50e-08 | 46 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.51e-12 | 75 |
central nervous system | 8.58e-12 | 73 |
ectoderm-derived structure | 1.10e-08 | 95 |
ectoderm | 1.10e-08 | 95 |
presumptive ectoderm | 1.10e-08 | 95 |
connective tissue | 1.50e-08 | 46 |
neurectoderm | 8.96e-07 | 64 |
neural plate | 8.96e-07 | 64 |
presumptive neural plate | 8.96e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.