FFCP PHASE1:Hg19::chr9:139640662..139640673,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=158062|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17337|TSSclassifier=N|UniProt=|association_with_transcript=-188bp_to_ENST00000476567_5end|description=CAGE_peak_7_at_LCN6_5end|id=chr9:139640662..139640673,-|ontology_enrichment_celltype=CL:0002274!4.22e-07!5;CL:0000457!4.22e-07!5;CL:0002191!4.22e-07!5;CL:0000097!4.22e-07!5;CL:0000831!4.22e-07!5;CL:0002028!4.22e-07!5|ontology_enrichment_celltype_v019=CL:0000097;3.46e-45;5!CL:0000163;1.63e-25;9!CL:0000151;5.64e-07;36|ontology_enrichment_celltype_v019_2=CL:0000097,2.20e-45,5;CL:0002028,2.20e-45,5;CL:0000163,1.27e-25,9;CL:0000151,6.39e-07,36|ontology_enrichment_development_v019=UBERON:0010226;7.62e-26;1!UBERON:0005062;1.40e-07;4!UBERON:0007284;1.40e-07;4|ontology_enrichment_disease=DOID:114!7.82e-08!2|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.13e-48!115;UBERON:0003978!3.72e-11!3;UBERON:0009751!3.72e-11!3;UBERON:0000946!3.72e-11!3;UBERON:0002523!3.72e-11!3;UBERON:0005983!3.72e-11!3;UBERON:0002165!3.72e-11!3;UBERON:0002062!3.72e-11!3;UBERON:0007280!3.72e-11!3;UBERON:0003075!2.71e-08!86;UBERON:0007284!2.71e-08!86;UBERON:0002133!5.98e-08!2;UBERON:0002346!9.62e-08!90;UBERON:0001049!3.17e-07!57;UBERON:0005068!3.17e-07!57;UBERON:0006241!3.17e-07!57;UBERON:0007135!3.17e-07!57;UBERON:0007100!9.83e-07!27|ontology_enrichment_uberon_v019=UBERON:0004151;6.51e-34;3!UBERON:0002134;2.78e-26;1!UBERON:0005208;2.78e-26;1!UBERON:0004145;2.78e-26;1!UBERON:0005946;2.78e-26;1!UBERON:0005965;2.78e-26;1!UBERON:0002078;2.78e-26;1!UBERON:0002084;7.62e-26;1!UBERON:0002082;7.62e-26;1!UBERON:0002081;7.30e-14;2!UBERON:0002133;7.30e-14;2!UBERON:0003978;1.10e-09;3!UBERON:0000946;1.10e-09;3!UBERON:0007100;1.31e-09;25|ontology_enrichment_uberon_v019_2=UBERON:0004151,7.70e-34,3;UBERON:0002134,3.58e-26,1;UBERON:0005208,3.58e-26,1;UBERON:0005946,3.58e-26,1;UBERON:0005965,3.58e-26,1;UBERON:0002078,3.58e-26,1;UBERON:0002084,7.62e-26,1;UBERON:0002082,7.62e-26,1;UBERON:0010226,7.62e-26,1;UBERON:0002081,8.28e-14,2;UBERON:0002133,8.28e-14,2;UBERON:0010227,8.28e-14,2;UBERON:0003978,1.19e-09,3;UBERON:0009751,1.19e-09,3;UBERON:0000946,1.19e-09,3;UBERON:0002523,1.19e-09,3;UBERON:0005983,1.19e-09,3;UBERON:0004145,1.19e-09,3;UBERON:0002165,1.19e-09,3;UBERON:0002062,1.19e-09,3;UBERON:0007280,1.19e-09,3;UBERON:0007100,6.58e-09,27|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4512968087854,2.45003920808834,2.39860623510122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,1.15425387755696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.687481272035051,2.15361907373044,0.399358000997982,0.429226048136571,1.11585728720936,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.244052529803926,0.1251909307065,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.0644578879735772,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=158062 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17337 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-188bp_to_ENST00000476567_5end | |||
|description=CAGE_peak_7_at_LCN6_5end | |||
|id=chr9:139640662..139640673,- | |||
|ontology_enrichment_celltype=CL:0002274!4.22e-07!5;CL:0000457!4.22e-07!5;CL:0002191!4.22e-07!5;CL:0000097!4.22e-07!5;CL:0000831!4.22e-07!5;CL:0002028!4.22e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000097;3.46e-45;5!CL:0000163;1.63e-25;9!CL:0000151;5.64e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.20e-45,5;CL:0002028,2.20e-45,5;CL:0000163,1.27e-25,9;CL:0000151,6.39e-07,36 | |||
|ontology_enrichment_development_v019=UBERON:0010226;7.62e-26;1!UBERON:0005062;1.40e-07;4!UBERON:0007284;1.40e-07;4 | |||
|ontology_enrichment_disease=DOID:114!7.82e-08!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.13e-48!115;UBERON:0003978!3.72e-11!3;UBERON:0009751!3.72e-11!3;UBERON:0000946!3.72e-11!3;UBERON:0002523!3.72e-11!3;UBERON:0005983!3.72e-11!3;UBERON:0002165!3.72e-11!3;UBERON:0002062!3.72e-11!3;UBERON:0007280!3.72e-11!3;UBERON:0003075!2.71e-08!86;UBERON:0007284!2.71e-08!86;UBERON:0002133!5.98e-08!2;UBERON:0002346!9.62e-08!90;UBERON:0001049!3.17e-07!57;UBERON:0005068!3.17e-07!57;UBERON:0006241!3.17e-07!57;UBERON:0007135!3.17e-07!57;UBERON:0007100!9.83e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;6.51e-34;3!UBERON:0002134;2.78e-26;1!UBERON:0005208;2.78e-26;1!UBERON:0004145;2.78e-26;1!UBERON:0005946;2.78e-26;1!UBERON:0005965;2.78e-26;1!UBERON:0002078;2.78e-26;1!UBERON:0002084;7.62e-26;1!UBERON:0002082;7.62e-26;1!UBERON:0002081;7.30e-14;2!UBERON:0002133;7.30e-14;2!UBERON:0003978;1.10e-09;3!UBERON:0000946;1.10e-09;3!UBERON:0007100;1.31e-09;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,7.70e-34,3;UBERON:0002134,3.58e-26,1;UBERON:0005208,3.58e-26,1;UBERON:0005946,3.58e-26,1;UBERON:0005965,3.58e-26,1;UBERON:0002078,3.58e-26,1;UBERON:0002084,7.62e-26,1;UBERON:0002082,7.62e-26,1;UBERON:0010226,7.62e-26,1;UBERON:0002081,8.28e-14,2;UBERON:0002133,8.28e-14,2;UBERON:0010227,8.28e-14,2;UBERON:0003978,1.19e-09,3;UBERON:0009751,1.19e-09,3;UBERON:0000946,1.19e-09,3;UBERON:0002523,1.19e-09,3;UBERON:0005983,1.19e-09,3;UBERON:0004145,1.19e-09,3;UBERON:0002165,1.19e-09,3;UBERON:0002062,1.19e-09,3;UBERON:0007280,1.19e-09,3;UBERON:0007100,6.58e-09,27 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4512968087854,2.45003920808834,2.39860623510122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,1.15425387755696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.687481272035051,2.15361907373044,0.399358000997982,0.429226048136571,1.11585728720936,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.244052529803926,0.1251909307065,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0.103432995861895,0.426467963801962,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | |||
|short_description=p7@LCN6 | |||
}} |
Revision as of 08:14, 14 September 2013
Short description: | p7@LCN6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_LCN6_5end |
Coexpression cluster: | NA |
Association with transcript: | -188bp_to_ENST00000476567_5end |
EntrezGene: | LCN6 |
HGNC: | 17337 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.20e-45 | 5 |
basophil mast progenitor cell | 2.20e-45 | 5 |
endocrine cell | 1.27e-25 | 9 |
secretory cell | 6.39e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 7.70e-34 | 3 |
tricuspid valve | 3.58e-26 | 1 |
right atrium valve | 3.58e-26 | 1 |
outflow tract of atrium | 3.58e-26 | 1 |
outflow part of right atrium | 3.58e-26 | 1 |
right cardiac atrium | 3.58e-26 | 1 |
heart left ventricle | 7.62e-26 | 1 |
cardiac ventricle | 7.62e-26 | 1 |
future cardiac ventricle | 7.62e-26 | 1 |
cardiac atrium | 8.28e-14 | 2 |
atrioventricular valve | 8.28e-14 | 2 |
future cardiac atrium | 8.28e-14 | 2 |
valve | 1.19e-09 | 3 |
cardiac mesenchyme | 1.19e-09 | 3 |
cardial valve | 1.19e-09 | 3 |
tunica intima | 1.19e-09 | 3 |
heart layer | 1.19e-09 | 3 |
outflow tract | 1.19e-09 | 3 |
endocardium | 1.19e-09 | 3 |
endocardial cushion | 1.19e-09 | 3 |
presumptive endocardium | 1.19e-09 | 3 |
primary circulatory organ | 6.58e-09 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.