FFCP PHASE1:Mm9::chr6:118105351..118105370,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=114|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:118105351..118105370,-|id=chr6:118105351..118105370,-|ontology_enrichment_celltype=CL:0000540!1.48e-14!33;CL:0000047!1.48e-14!33;CL:0000031!1.48e-14!33;CL:0000404!1.48e-14!33;CL:0000393!7.20e-12!39;CL:0000211!7.20e-12!39;CL:0000107!5.91e-10!9;CL:0002319!1.36e-09!43;CL:0000221!3.65e-09!44;CL:0000133!3.65e-09!44;CL:0000117!8.04e-08!23;CL:0000337!8.04e-08!23;CL:0000055!9.60e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.66e-32,33;CL:0000047,4.66e-32,33;CL:0000031,4.66e-32,33;CL:0000404,4.66e-32,33;CL:0000107,1.90e-27,9;CL:0000393,8.16e-27,39;CL:0000211,8.16e-27,39;CL:0002319,3.95e-24,43;CL:0000221,1.56e-23,44;CL:0000133,1.56e-23,44;CL:0002610,6.25e-15,3;CL:0002321,5.36e-14,70;CL:0000117,1.11e-12,23;CL:0000337,1.11e-12,23;CL:0002611,9.72e-11,2;CL:0000723,2.99e-10,91;CL:0000048,2.99e-10,91;CL:0000034,1.79e-09,97;CL:0002614,9.02e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002410!5.91e-10!9;UBERON:0001017!7.65e-09!73;UBERON:0005743!7.65e-09!73;UBERON:0000073!9.23e-09!75;UBERON:0001016!9.23e-09!75;UBERON:0000010!1.21e-08!11;UBERON:0004121!7.76e-08!102;UBERON:0000924!7.76e-08!102;UBERON:0006601!7.76e-08!102|ontology_enrichment_uberon_v019_2=UBERON:0002410,1.90e-27,9;UBERON:0000010,2.41e-22,11;UBERON:0000013,2.30e-16,3;UBERON:0010313,5.82e-16,3;UBERON:0002342,5.82e-16,3;UBERON:0002005,5.82e-16,3;UBERON:0005428,5.82e-16,3;UBERON:0005062,5.82e-16,3;UBERON:0004684,6.25e-15,3;UBERON:0002275,6.25e-15,3;UBERON:0001017,2.48e-13,73;UBERON:0001016,6.45e-13,75;UBERON:0002256,9.72e-11,2;UBERON:0004121,1.01e-09,95;UBERON:0000924,1.01e-09,95;UBERON:0006601,1.01e-09,95;UBERON:0001948,2.70e-09,5;UBERON:0002315,2.70e-09,5;UBERON:0002240,7.92e-08,6;UBERON:0005174,7.92e-08,6;UBERON:0001137,7.92e-08,6;UBERON:0002038,9.02e-08,3;UBERON:0009663,9.02e-08,3;UBERON:0009661,9.02e-08,3;UBERON:0000125,9.02e-08,3;UBERON:0002308,9.02e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0.22940928106717,0,0,0,0.380046838912748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,2.28520787523043,1.10434270475807,0,0,0,1.10115880999389,1.40456071893706,1.38245879930619,0.131886287730194,0.640413505216868,0,1.95428099300967,0.56276261003168,3.0559649555362,0.883885756421003,1.28134512719193,0.559198337475902,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693941307064543,0,0,0,0,0,0,0,0,0,0.220841518460394,0.484875253135222,0,0,0,0,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0.20778804455956,0.324482526135515,0,0,0,0,0,0.229902104433473,0.180062129805349,0.452114453507145,0.136072998302656,0,0.281105173679186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492502392237286,0.0810688095458557,0.438599962275997,0,0,0,0,0,0.264450566663544,0.213288250535234,0.464473343720877,0.257734922644187,0.201683524623343,0.22237804384487,0.380451252225118,0,0.658795818896044,1.00534083520108,0.198956472041151,0.779856348476481,0,0.216138049874694,0,0.379335801906163,0.342745537829186,1.1270773567308,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289298117163023,0,0,0.983528546038072,0,0.80275294993896,0.586058432961016,0,0.252470927204373,1.89304931649754,2.34263246577983,2.80050417052639,2.15071918157297,0.891194696329576,0.566153061577665,3.23848561339915,3.79932615284705,1.97643888973262,0.321321316421807,0,0,0,0.164970122972535,1.32745138339963,0.485561272309963,0.906970670894253,0.565815239267694,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0.632073515871632,0,0,0,0.18006109403131,0,0,0,0.891844088010353,0.658196082408484,0.304464949114599,0,0,0,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0.874442509889552,0.927126510052548,0,0.412773735926445,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0.203319467126849,0.324016022465404,0.627264888043406,0,0.269728692769641,0.0826534557253359,0,0.259229946583586,0,0,0,0.165458490457098,0,0,0,0.117357238645754,0.2604087696879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0,0,0.341467211508268,0,0,0,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.128050304809739,0.114870937911227,0.476293691283074,0,0,0,0.441596760403192,0.342869252385415,0.177475806159338,0.476872379894642,0,0.0941093804153306,0.25384382367503,0,0,0,0,0.593175090620871,0,0.409231043169689,0,0,0,0,0.214871054048298,0,0.220591419119515,0|short_description=p@chr6:118105351..118105370,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=114 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:118105351..118105370,- | |||
|id=chr6:118105351..118105370,- | |||
|ontology_enrichment_celltype=CL:0000540!1.48e-14!33;CL:0000047!1.48e-14!33;CL:0000031!1.48e-14!33;CL:0000404!1.48e-14!33;CL:0000393!7.20e-12!39;CL:0000211!7.20e-12!39;CL:0000107!5.91e-10!9;CL:0002319!1.36e-09!43;CL:0000221!3.65e-09!44;CL:0000133!3.65e-09!44;CL:0000117!8.04e-08!23;CL:0000337!8.04e-08!23;CL:0000055!9.60e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.66e-32,33;CL:0000047,4.66e-32,33;CL:0000031,4.66e-32,33;CL:0000404,4.66e-32,33;CL:0000107,1.90e-27,9;CL:0000393,8.16e-27,39;CL:0000211,8.16e-27,39;CL:0002319,3.95e-24,43;CL:0000221,1.56e-23,44;CL:0000133,1.56e-23,44;CL:0002610,6.25e-15,3;CL:0002321,5.36e-14,70;CL:0000117,1.11e-12,23;CL:0000337,1.11e-12,23;CL:0002611,9.72e-11,2;CL:0000723,2.99e-10,91;CL:0000048,2.99e-10,91;CL:0000034,1.79e-09,97;CL:0002614,9.02e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002410!5.91e-10!9;UBERON:0001017!7.65e-09!73;UBERON:0005743!7.65e-09!73;UBERON:0000073!9.23e-09!75;UBERON:0001016!9.23e-09!75;UBERON:0000010!1.21e-08!11;UBERON:0004121!7.76e-08!102;UBERON:0000924!7.76e-08!102;UBERON:0006601!7.76e-08!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002410,1.90e-27,9;UBERON:0000010,2.41e-22,11;UBERON:0000013,2.30e-16,3;UBERON:0010313,5.82e-16,3;UBERON:0002342,5.82e-16,3;UBERON:0002005,5.82e-16,3;UBERON:0005428,5.82e-16,3;UBERON:0005062,5.82e-16,3;UBERON:0004684,6.25e-15,3;UBERON:0002275,6.25e-15,3;UBERON:0001017,2.48e-13,73;UBERON:0001016,6.45e-13,75;UBERON:0002256,9.72e-11,2;UBERON:0004121,1.01e-09,95;UBERON:0000924,1.01e-09,95;UBERON:0006601,1.01e-09,95;UBERON:0001948,2.70e-09,5;UBERON:0002315,2.70e-09,5;UBERON:0002240,7.92e-08,6;UBERON:0005174,7.92e-08,6;UBERON:0001137,7.92e-08,6;UBERON:0002038,9.02e-08,3;UBERON:0009663,9.02e-08,3;UBERON:0009661,9.02e-08,3;UBERON:0000125,9.02e-08,3;UBERON:0002308,9.02e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0.22940928106717,0,0,0,0.380046838912748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,2.28520787523043,1.10434270475807,0,0,0,1.10115880999389,1.40456071893706,1.38245879930619,0.131886287730194,0.640413505216868,0,1.95428099300967,0.56276261003168,3.0559649555362,0.883885756421003,1.28134512719193,0.559198337475902,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693941307064543,0,0,0,0,0,0,0,0,0,0.220841518460394,0.484875253135222,0,0,0,0,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0.20778804455956,0.324482526135515,0,0,0,0,0,0.229902104433473,0.180062129805349,0.452114453507145,0.136072998302656,0,0.281105173679186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492502392237286,0.0810688095458557,0.438599962275997,0,0,0,0,0,0.264450566663544,0.213288250535234,0.464473343720877,0.257734922644187,0.201683524623343,0.22237804384487,0.380451252225118,0,0.658795818896044,1.00534083520108,0.198956472041151,0.779856348476481,0,0.216138049874694,0,0.379335801906163,0.342745537829186,1.1270773567308,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289298117163023,0,0,0.983528546038072,0,0.80275294993896,0.586058432961016,0,0.252470927204373,1.89304931649754,2.34263246577983,2.80050417052639,2.15071918157297,0.891194696329576,0.566153061577665,3.23848561339915,3.79932615284705,1.97643888973262,0.321321316421807,0,0,0,0.164970122972535,1.32745138339963,0.485561272309963,0.906970670894253,0.565815239267694,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0.632073515871632,0,0,0,0.18006109403131,0,0,0,0.891844088010353,0.658196082408484,0.304464949114599,0,0,0,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0.874442509889552,0.927126510052548,0,0.412773735926445,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0.203319467126849,0.324016022465404,0.627264888043406,0,0.269728692769641,0.0826534557253359,0,0.259229946583586,0,0,0,0.165458490457098,0,0,0,0.117357238645754,0.2604087696879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0,0,0.341467211508268,0,0,0,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.128050304809739,0.114870937911227,0.476293691283074,0,0,0,0.441596760403192,0.342869252385415,0.177475806159338,0.476872379894642,0,0.0941093804153306,0.25384382367503,0,0,0,0,0.593175090620871,0,0.409231043169689,0,0,0,0,0.214871054048298,0,0.220591419119515,0 | |||
|short_description=p@chr6:118105351..118105370,- | |||
}} |
Revision as of 08:40, 14 September 2013
Short description: | p@chr6:118105351..118105370, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:118105351..118105370, - |
Coexpression cluster: | MCL_coexpression_mm9:114 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.66e-32 | 33 |
neuronal stem cell | 4.66e-32 | 33 |
neuroblast | 4.66e-32 | 33 |
electrically signaling cell | 4.66e-32 | 33 |
autonomic neuron | 1.90e-27 | 9 |
electrically responsive cell | 8.16e-27 | 39 |
electrically active cell | 8.16e-27 | 39 |
neural cell | 3.95e-24 | 43 |
ectodermal cell | 1.56e-23 | 44 |
neurectodermal cell | 1.56e-23 | 44 |
raphe nuclei neuron | 6.25e-15 | 3 |
embryonic cell | 5.36e-14 | 70 |
CNS neuron (sensu Vertebrata) | 1.11e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.11e-12 | 23 |
neuron of the dorsal spinal cord | 9.72e-11 | 2 |
somatic stem cell | 2.99e-10 | 91 |
multi fate stem cell | 2.99e-10 | 91 |
stem cell | 1.79e-09 | 97 |
neuron of the substantia nigra | 9.02e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
autonomic nervous system | 1.90e-27 | 9 |
peripheral nervous system | 2.41e-22 | 11 |
sympathetic nervous system | 2.30e-16 | 3 |
neural crest-derived structure | 5.82e-16 | 3 |
neural crest | 5.82e-16 | 3 |
enteric nervous system | 5.82e-16 | 3 |
vagal neural crest | 5.82e-16 | 3 |
neural fold | 5.82e-16 | 3 |
raphe nuclei | 6.25e-15 | 3 |
reticular formation | 6.25e-15 | 3 |
central nervous system | 2.48e-13 | 73 |
nervous system | 6.45e-13 | 75 |
dorsal horn of spinal cord | 9.72e-11 | 2 |
ectoderm-derived structure | 1.01e-09 | 95 |
ectoderm | 1.01e-09 | 95 |
presumptive ectoderm | 1.01e-09 | 95 |
regional part of spinal cord | 2.70e-09 | 5 |
gray matter of spinal cord | 2.70e-09 | 5 |
spinal cord | 7.92e-08 | 6 |
dorsal region element | 7.92e-08 | 6 |
dorsum | 7.92e-08 | 6 |
substantia nigra | 9.02e-08 | 3 |
telencephalic nucleus | 9.02e-08 | 3 |
midbrain nucleus | 9.02e-08 | 3 |
neural nucleus | 9.02e-08 | 3 |
nucleus of brain | 9.02e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.