FFCP PHASE1:Mm9::chrX:98516253..98516269,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2228|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chrX:98516253..98516269,+|id=chrX:98516253..98516269,+|ontology_enrichment_celltype=CL:0000117!1.06e-37!23;CL:0000337!1.06e-37!23;CL:0000540!1.32e-27!33;CL:0000047!1.32e-27!33;CL:0000031!1.32e-27!33;CL:0000404!1.32e-27!33;CL:0002319!6.80e-25!43;CL:0000221!3.28e-24!44;CL:0000133!3.28e-24!44;CL:0000393!1.25e-22!39;CL:0000211!1.25e-22!39;CL:0000055!1.09e-20!50;CL:0002321!8.97e-15!70;CL:0000220!8.97e-15!70;CL:0002609!3.29e-10!6;CL:0002612!2.05e-09!3;CL:0000120!1.18e-08!3;CL:0000723!5.33e-08!91;CL:0000048!5.33e-08!91;CL:0000034!3.23e-07!97;CL:0000548!5.87e-07!115;CL:0000004!5.87e-07!115;CL:0000255!5.87e-07!115|ontology_enrichment_celltype_v019_2=CL:0002612,2.06e-27,3;CL:0000117,4.79e-24,23;CL:0000337,4.79e-24,23;CL:0000540,1.12e-16,33;CL:0000047,1.12e-16,33;CL:0000031,1.12e-16,33;CL:0000404,1.12e-16,33;CL:0002319,3.98e-16,43;CL:0000221,9.45e-16,44;CL:0000133,9.45e-16,44;CL:0000393,4.63e-14,39;CL:0000211,4.63e-14,39;CL:0000120,1.42e-12,3;CL:0002610,1.42e-12,3;CL:0002321,1.01e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.30e-26!34;UBERON:0001017!1.89e-24!73;UBERON:0005743!1.89e-24!73;UBERON:0000073!1.25e-23!75;UBERON:0001016!1.25e-23!75;UBERON:0001049!2.10e-19!52;UBERON:0005068!2.10e-19!52;UBERON:0006241!2.10e-19!52;UBERON:0007135!2.10e-19!52;UBERON:0002791!1.04e-16!29;UBERON:0003528!1.04e-16!29;UBERON:0001893!1.04e-16!29;UBERON:0004121!1.06e-15!102;UBERON:0000924!1.06e-15!102;UBERON:0006601!1.06e-15!102;UBERON:0002616!9.93e-15!49;UBERON:0000955!2.39e-14!50;UBERON:0006238!2.39e-14!50;UBERON:0001948!4.98e-14!5;UBERON:0002315!4.98e-14!5;UBERON:0002346!7.51e-13!71;UBERON:0003075!7.51e-13!71;UBERON:0007284!7.51e-13!71;UBERON:0000956!1.08e-12!21;UBERON:0001869!1.08e-12!21;UBERON:0000203!1.08e-12!21;UBERON:0000033!9.02e-12!63;UBERON:0002240!1.27e-11!6;UBERON:0005174!1.27e-11!6;UBERON:0001137!1.27e-11!6;UBERON:0002780!1.47e-11!39;UBERON:0001890!1.47e-11!39;UBERON:0006240!1.47e-11!39;UBERON:0003080!3.47e-11!40;UBERON:0003076!4.72e-10!12;UBERON:0003057!4.72e-10!12;UBERON:0002257!2.05e-09!3;UBERON:0002021!5.11e-09!10;UBERON:0000411!5.11e-09!10;UBERON:0001950!5.11e-09!10;UBERON:0002619!8.93e-09!17;UBERON:0003056!1.58e-08!49;UBERON:0007811!1.97e-07!86;UBERON:0000025!6.09e-07!114;UBERON:0004111!6.69e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0002257,2.06e-27,3;UBERON:0001948,9.48e-17,5;UBERON:0002315,9.48e-17,5;UBERON:0002240,4.51e-14,6;UBERON:0005174,4.51e-14,6;UBERON:0001137,4.51e-14,6;UBERON:0004684,1.42e-12,3;UBERON:0002275,1.42e-12,3;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0000073,1.01e-07,54;UBERON:0003076,2.48e-07,12;UBERON:0003057,2.48e-07,12|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0,0,0.202316460859598,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0,0.103689612308478,0.405017814995072,0.210324961351382,0.571301968807607,0.883474163806454,0,0.575072826109418,0.919218786610021,0,1.65993539510744,1.0752457327937,0,1.18933936683133,0.52091337055676,0.279182999001381,0,0.30559649555362,3.53554302568401,2.70506193518296,1.1183966749518,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,0,0.515559547031063,1.37016503954128,0,0.675022500231806,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chrX:98516253..98516269,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2228 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chrX:98516253..98516269,+ | |||
|id=chrX:98516253..98516269,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.06e-37!23;CL:0000337!1.06e-37!23;CL:0000540!1.32e-27!33;CL:0000047!1.32e-27!33;CL:0000031!1.32e-27!33;CL:0000404!1.32e-27!33;CL:0002319!6.80e-25!43;CL:0000221!3.28e-24!44;CL:0000133!3.28e-24!44;CL:0000393!1.25e-22!39;CL:0000211!1.25e-22!39;CL:0000055!1.09e-20!50;CL:0002321!8.97e-15!70;CL:0000220!8.97e-15!70;CL:0002609!3.29e-10!6;CL:0002612!2.05e-09!3;CL:0000120!1.18e-08!3;CL:0000723!5.33e-08!91;CL:0000048!5.33e-08!91;CL:0000034!3.23e-07!97;CL:0000548!5.87e-07!115;CL:0000004!5.87e-07!115;CL:0000255!5.87e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,2.06e-27,3;CL:0000117,4.79e-24,23;CL:0000337,4.79e-24,23;CL:0000540,1.12e-16,33;CL:0000047,1.12e-16,33;CL:0000031,1.12e-16,33;CL:0000404,1.12e-16,33;CL:0002319,3.98e-16,43;CL:0000221,9.45e-16,44;CL:0000133,9.45e-16,44;CL:0000393,4.63e-14,39;CL:0000211,4.63e-14,39;CL:0000120,1.42e-12,3;CL:0002610,1.42e-12,3;CL:0002321,1.01e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.30e-26!34;UBERON:0001017!1.89e-24!73;UBERON:0005743!1.89e-24!73;UBERON:0000073!1.25e-23!75;UBERON:0001016!1.25e-23!75;UBERON:0001049!2.10e-19!52;UBERON:0005068!2.10e-19!52;UBERON:0006241!2.10e-19!52;UBERON:0007135!2.10e-19!52;UBERON:0002791!1.04e-16!29;UBERON:0003528!1.04e-16!29;UBERON:0001893!1.04e-16!29;UBERON:0004121!1.06e-15!102;UBERON:0000924!1.06e-15!102;UBERON:0006601!1.06e-15!102;UBERON:0002616!9.93e-15!49;UBERON:0000955!2.39e-14!50;UBERON:0006238!2.39e-14!50;UBERON:0001948!4.98e-14!5;UBERON:0002315!4.98e-14!5;UBERON:0002346!7.51e-13!71;UBERON:0003075!7.51e-13!71;UBERON:0007284!7.51e-13!71;UBERON:0000956!1.08e-12!21;UBERON:0001869!1.08e-12!21;UBERON:0000203!1.08e-12!21;UBERON:0000033!9.02e-12!63;UBERON:0002240!1.27e-11!6;UBERON:0005174!1.27e-11!6;UBERON:0001137!1.27e-11!6;UBERON:0002780!1.47e-11!39;UBERON:0001890!1.47e-11!39;UBERON:0006240!1.47e-11!39;UBERON:0003080!3.47e-11!40;UBERON:0003076!4.72e-10!12;UBERON:0003057!4.72e-10!12;UBERON:0002257!2.05e-09!3;UBERON:0002021!5.11e-09!10;UBERON:0000411!5.11e-09!10;UBERON:0001950!5.11e-09!10;UBERON:0002619!8.93e-09!17;UBERON:0003056!1.58e-08!49;UBERON:0007811!1.97e-07!86;UBERON:0000025!6.09e-07!114;UBERON:0004111!6.69e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002257,2.06e-27,3;UBERON:0001948,9.48e-17,5;UBERON:0002315,9.48e-17,5;UBERON:0002240,4.51e-14,6;UBERON:0005174,4.51e-14,6;UBERON:0001137,4.51e-14,6;UBERON:0004684,1.42e-12,3;UBERON:0002275,1.42e-12,3;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0000073,1.01e-07,54;UBERON:0003076,2.48e-07,12;UBERON:0003057,2.48e-07,12 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0,0,0.202316460859598,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0,0.103689612308478,0.405017814995072,0.210324961351382,0.571301968807607,0.883474163806454,0,0.575072826109418,0.919218786610021,0,1.65993539510744,1.0752457327937,0,1.18933936683133,0.52091337055676,0.279182999001381,0,0.30559649555362,3.53554302568401,2.70506193518296,1.1183966749518,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,0,0.515559547031063,1.37016503954128,0,0.675022500231806,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chrX:98516253..98516269,+ | |||
}} |
Revision as of 20:20, 14 September 2013
Short description: | p@chrX:98516253..98516269, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:98516253..98516269, + |
Coexpression cluster: | MCL_coexpression_mm9:2228 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 2.06e-27 | 3 |
CNS neuron (sensu Vertebrata) | 4.79e-24 | 23 |
neuroblast (sensu Vertebrata) | 4.79e-24 | 23 |
neuron | 1.12e-16 | 33 |
neuronal stem cell | 1.12e-16 | 33 |
neuroblast | 1.12e-16 | 33 |
electrically signaling cell | 1.12e-16 | 33 |
neural cell | 3.98e-16 | 43 |
ectodermal cell | 9.45e-16 | 44 |
neurectodermal cell | 9.45e-16 | 44 |
electrically responsive cell | 4.63e-14 | 39 |
electrically active cell | 4.63e-14 | 39 |
granule cell | 1.42e-12 | 3 |
raphe nuclei neuron | 1.42e-12 | 3 |
embryonic cell | 1.01e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
ventral horn of spinal cord | 2.06e-27 | 3 |
regional part of spinal cord | 9.48e-17 | 5 |
gray matter of spinal cord | 9.48e-17 | 5 |
spinal cord | 4.51e-14 | 6 |
dorsal region element | 4.51e-14 | 6 |
dorsum | 4.51e-14 | 6 |
raphe nuclei | 1.42e-12 | 3 |
reticular formation | 1.42e-12 | 3 |
central nervous system | 1.42e-11 | 73 |
nervous system | 2.99e-11 | 75 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
regional part of nervous system | 1.01e-07 | 54 |
posterior neural tube | 2.48e-07 | 12 |
chordal neural plate | 2.48e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.