FFCP PHASE1:Hg19::chr13:78109854..78109865,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8796 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10573 | |||
|TSSclassifier=strong | |||
|UniProt=F2Z2X8 | |||
|association_with_transcript=0bp_to_ENST00000471491_5end | |||
|coexpression_cluster_id=C629 | |||
|description=CAGE_peak_3_at_SCEL_5end | |||
|id=chr13:78109854..78109865,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.16e-28!43;CL:0000066!5.09e-22!254;CL:0000223!1.21e-19!59;CL:0002251!2.65e-15!21;CL:0002368!1.11e-12!13;CL:0002202!2.82e-07!9;CL:0002632!2.82e-07!9;CL:0000349!4.23e-07!3;CL:0002577!4.23e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.81e-14;19!CL:0002577;7.48e-12;3!CL:0002076;3.60e-10;42!CL:0002368;2.26e-09;13!CL:0002536;5.23e-08;2!CL:0000312;6.99e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.51e-14,19;CL:0002076,1.19e-13,42;CL:0000066,7.15e-13,253;CL:0002577,5.27e-12,3;CL:0002368,2.78e-09,13;CL:0000223,4.84e-09,58;CL:0002536,3.51e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.69e-13!14;DOID:305!8.02e-12!106;DOID:0050687!3.81e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:4468;4.43e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,4.36e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.77e-18!14;UBERON:0000158!2.77e-18!14;UBERON:0004119!4.12e-18!169;UBERON:0000925!4.12e-18!169;UBERON:0006595!4.12e-18!169;UBERON:0001004!9.52e-18!72;UBERON:0000344!1.18e-13!12;UBERON:0003124!5.40e-13!7;UBERON:0000065!9.65e-13!53;UBERON:0000166!1.34e-12!21;UBERON:0001007!1.01e-11!155;UBERON:0001555!1.01e-11!155;UBERON:0007026!1.01e-11!155;UBERON:0000161!1.37e-11!35;UBERON:0000077!2.16e-11!130;UBERON:0004923!2.21e-10!57;UBERON:0005178!2.48e-10!34;UBERON:0002224!2.48e-10!34;UBERON:0000064!2.88e-10!219;UBERON:0005795!3.00e-10!22;UBERON:0005911!3.78e-10!82;UBERON:0000165!4.80e-10!28;UBERON:0000930!4.80e-10!28;UBERON:0005181!6.42e-10!35;UBERON:0000478!2.38e-09!24;UBERON:0000995!6.32e-09!21;UBERON:0003729!8.98e-09!5;UBERON:0003975!2.11e-08!22;UBERON:0001987!2.22e-08!4;UBERON:0004340!2.22e-08!4;UBERON:0002048!4.05e-08!22;UBERON:0000117!4.05e-08!22;UBERON:0000171!4.05e-08!22;UBERON:0000170!4.05e-08!22;UBERON:0005597!4.05e-08!22;UBERON:0000118!4.05e-08!22;UBERON:0004921!4.41e-08!129;UBERON:0004185!4.41e-08!129;UBERON:0001041!1.39e-07!98;UBERON:0007196!1.54e-07!14;UBERON:0001558!1.54e-07!14;UBERON:0008947!1.82e-07!38;UBERON:0003258!1.82e-07!38;UBERON:0003343!2.07e-07!4;UBERON:0004785!2.07e-07!4;UBERON:0000305!2.19e-07!7;UBERON:0001444!3.83e-07!48;UBERON:0001723!4.06e-07!3;UBERON:0001033!4.06e-07!3;UBERON:0010056!4.06e-07!3;UBERON:0004175!4.31e-07!25;UBERON:0002294!5.67e-07!7;UBERON:0001173!5.67e-07!7;UBERON:0004912!5.67e-07!7;UBERON:0000072!9.11e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.93e-13;10!UBERON:0000158;3.93e-13;10!UBERON:0000478;4.20e-11;24!UBERON:0001987;5.36e-09;4!UBERON:0000305;6.37e-09;7!UBERON:0000474;5.65e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.35e-20,14;UBERON:0000158,2.35e-20,14;UBERON:0003124,3.25e-13,7;UBERON:0005795,3.85e-12,22;UBERON:0000478,3.66e-11,24;UBERON:0001004,2.67e-10,74;UBERON:0004119,3.74e-10,160;UBERON:0000925,3.74e-10,160;UBERON:0006595,3.74e-10,160;UBERON:0000995,4.82e-10,21;UBERON:0003975,1.58e-09,22;UBERON:0004923,2.27e-09,66;UBERON:0001987,4.13e-09,4;UBERON:0004340,4.13e-09,4;UBERON:0000305,5.13e-09,7;UBERON:0000065,1.03e-08,54;UBERON:0004175,3.16e-08,25;UBERON:0003134,4.10e-08,37;UBERON:0000474,4.10e-08,37;UBERON:0004871,6.88e-08,8;UBERON:0000166,1.54e-07,22;UBERON:0005178,3.22e-07,34;UBERON:0002224,3.22e-07,34;UBERON:0003100,3.86e-07,41;UBERON:0000161,5.40e-07,36;UBERON:0005181,5.73e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0.697801167972428,1.96597234917155,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,1.83884244895785,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702678285545008,0.523916301990851,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,1.90922284413584,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,8.0636870840307,1.09750285408626,1.1240175325762,1.00528972411631,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0.425325291727159,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72814814301633,3.32870879020994,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.91896504848708,0,0,0,0,0.231046011313244,0,0,0.73886140225013,0,0,0,0,0,0,1.01950509218015,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65284915360978,0.384380134730212,1.02090169995667,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,1.05844323998063,0.670302275535787,0,0.941438007767792,0,0,0.443430153536676,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0,28.8880826532605,0.890894042497916,27.0301417847324,0,0,0,0,0,0,0,0,0,0,0,2.3365771298305,0.895105873378046,0,0,0,0,0,0,0,0,0,0,0.341380344856499,3.55955110409873,0,0,0,0,0,0,0,0,0,0,0,1.95193241990045,2.23155749661011,0,0,0,0,4.46601623624687,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,9.07291677470516,5.06021705293358,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,1.10939738410511,5.0332324117188,1.7638631534588,0.261177619741208,0,0,0,0,0,30.8425072433174,0,0.677942222341597,0,0,0,2.34661659281764,0.881747022766871,0,0,0,0,0,2.88109595976299,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0.739202355635845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,1.40963004463334,3.31040978959853,0.157204305099666,2.07119527673598,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,3.80361822045529,0,0,0,0,0,2.65771064666944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.471878893390961,1.83428598521679,0.924205329202706,0,0,0,0,0,0,0,0,1.47856086217045,0,0,0,0,0,0,0.496211178389294,0,0.383287282918786,0,0,0,0,0.354809480650555,0,0,0,0,0.945550727071746,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.51215543128185,1.38251932362818,0,0,0,0,1.3746412112643,0,0,0,0.196300467230486,0,0.647428837187895,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0.352894871715692,0.722172300202514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.0807157014246,0.952257725854961,0,0,0.112131862580613,0,0,11.538987638539,16.4271984520935,7.74548609667757,2.22338836717297,0.332660356546013,3.09332420721703,0,0,0,0,0.244482888365733,3.66206560484165,0,0,0 | |||
|short_description=p3@SCEL | |||
}} |
Revision as of 18:08, 11 January 2014
Short description: | p3@SCEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCEL_5end |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | 0bp_to_ENST00000471491_5end |
EntrezGene: | SCEL |
HGNC: | 10573 |
UniProt: | F2Z2X8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.51e-14 | 19 |
endo-epithelial cell | 1.19e-13 | 42 |
epithelial cell | 7.15e-13 | 253 |
placental epithelial cell | 5.27e-12 | 3 |
respiratory epithelial cell | 2.78e-09 | 13 |
endodermal cell | 4.84e-09 | 58 |
amniotic epithelial cell | 3.51e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.35e-20 | 14 |
membranous layer | 2.35e-20 | 14 |
chorion | 3.25e-13 | 7 |
embryonic uterus | 3.85e-12 | 22 |
extraembryonic structure | 3.66e-11 | 24 |
respiratory system | 2.67e-10 | 74 |
endoderm-derived structure | 3.74e-10 | 160 |
endoderm | 3.74e-10 | 160 |
presumptive endoderm | 3.74e-10 | 160 |
uterus | 4.82e-10 | 21 |
internal female genitalia | 1.58e-09 | 22 |
organ component layer | 2.27e-09 | 66 |
placenta | 4.13e-09 | 4 |
allantois | 4.13e-09 | 4 |
amnion | 5.13e-09 | 7 |
respiratory tract | 1.03e-08 | 54 |
internal genitalia | 3.16e-08 | 25 |
female reproductive organ | 4.10e-08 | 37 |
female reproductive system | 4.10e-08 | 37 |
somatic layer of lateral plate mesoderm | 6.88e-08 | 8 |
oral opening | 1.54e-07 | 22 |
thoracic cavity element | 3.22e-07 | 34 |
thoracic cavity | 3.22e-07 | 34 |
female organism | 3.86e-07 | 41 |
orifice | 5.40e-07 | 36 |
thoracic segment organ | 5.73e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 4.36e-09 | 2 |