FFCP PHASE1:Hg19::chr14:89479733..89479748,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr14:89479733..89479748,+ | |||
|id=chr14:89479733..89479748,+ | |||
|ontology_enrichment_celltype=CL:0002178!1.39e-11!3;CL:0000223!3.42e-10!59;CL:0000066!2.56e-09!254 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.11e-14;4!CL:0000182;1.73e-10;12!CL:0002535;3.81e-08;2!CL:0002262;6.57e-08;2!CL:1000398;6.57e-08;2!CL:0002253;6.57e-08;2!CL:0002076;3.36e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.76e-14,4;CL:0000223,7.15e-14,58;CL:0000182,2.32e-10,12;CL:0000066,1.01e-08,253;CL:0002535,3.82e-08,2;CL:0002076,5.84e-08,42;CL:0002262,7.03e-08,2;CL:1000398,7.03e-08,2;CL:0002253,8.60e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000223;2.15e-09;58!UBERON:0001041;2.47e-07;30 | |||
|ontology_enrichment_disease=DOID:0050687!3.95e-26!143;DOID:305!2.19e-22!106;DOID:162!1.00e-20!235;DOID:14566!4.49e-20!239;DOID:3119!1.82e-19!14;DOID:299!2.24e-12!25;DOID:0050686!1.40e-09!137;DOID:4929!1.01e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3119;2.48e-15;14!DOID:3910;4.23e-08;2!DOID:305;5.08e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,2.58e-15,14;DOID:305,8.01e-14,106;DOID:0050687,6.56e-10,143;DOID:3910,4.38e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!1.14e-13!35;UBERON:0004921!1.21e-10!129;UBERON:0004185!1.21e-10!129;UBERON:0000160!1.32e-10!27;UBERON:0001007!1.26e-09!155;UBERON:0001555!1.26e-09!155;UBERON:0007026!1.26e-09!155;UBERON:0004119!2.56e-08!169;UBERON:0000925!2.56e-08!169;UBERON:0006595!2.56e-08!169;UBERON:0005911!2.50e-07!82;UBERON:0003929!5.81e-07!54;UBERON:0000077!8.63e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;2.11e-14;4!UBERON:0001262;2.11e-14;4!UBERON:0004786;2.11e-14;4!UBERON:0004808;2.11e-14;4!UBERON:0001277;2.11e-14;4!UBERON:0005911;9.13e-09;36!UBERON:0000485;1.27e-08;7!UBERON:0003929;1.27e-08;7!UBERON:0006955;3.81e-08;2!UBERON:0004801;3.81e-08;2!UBERON:0004903;4.23e-08;2!UBERON:0002173;4.23e-08;2!UBERON:0002186;4.23e-08;2!UBERON:0001281;6.57e-08;2!UBERON:0003497;6.57e-08;2!UBERON:0003909;6.57e-08;2!UBERON:0003835;6.57e-08;2!UBERON:0003350;1.19e-07;8!UBERON:0002107;8.12e-07;19!UBERON:0006925;8.12e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.76e-14,4;UBERON:0001262,2.76e-14,4;UBERON:0004786,2.76e-14,4;UBERON:0004808,2.76e-14,4;UBERON:0001277,2.76e-14,4;UBERON:0005911,1.39e-09,82;UBERON:0007499,1.12e-08,25;UBERON:0003929,1.68e-08,54;UBERON:0009856,2.37e-08,26;UBERON:0006955,3.82e-08,2;UBERON:0004801,3.82e-08,2;UBERON:0004903,4.38e-08,2;UBERON:0002173,4.38e-08,2;UBERON:0002186,4.38e-08,2;UBERON:0004921,4.56e-08,118;UBERON:0001281,7.03e-08,2;UBERON:0003497,7.03e-08,2;UBERON:0003909,7.03e-08,2;UBERON:0003835,7.03e-08,2;UBERON:0003350,1.35e-07,8;UBERON:0000485,7.64e-07,9;UBERON:0002107,9.74e-07,19;UBERON:0006925,9.74e-07,19;UBERON:0008836,9.74e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,5.28850285735388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65890789101569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0,0.557216921387392,0,0,0,0,0,0,0.333926115068718,0,0,0,0,4.78672220923124,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,2.03402920234213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0.353830258013357,0.611030144933625,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685209623233754,0,0,0,0.160317640503067,0,1.9980960958213,0.72045208577053,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3393140992228,0.824158583811665,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643324774124777,0,0,0,0.734210113519403,0,0,0,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0.983091635014877,0,0,0,0.172214979660816,0,0.552317850755522,0,0,0.511577485214607,0,0,0.109209638192014,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0.40341013740704,1.56302802246618,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0.215927591218621,0,0,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0.392600934460972,0,0,0,0,0,0,0.596852325484105,0,0,0,0.301925687133347,0.154348316215889,0,1.41095188908457,0,0,0,0,0,0,0,0,0,0.178553938605658,1.41157948686277,1.92579280054004,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr14:89479733..89479748,+ | |||
}} |
Revision as of 21:24, 11 January 2014
Short description: | p@chr14:89479733..89479748, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:89479733..89479748, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.76e-14 | 4 |
endodermal cell | 7.15e-14 | 58 |
hepatocyte | 2.32e-10 | 12 |
epithelial cell | 1.01e-08 | 253 |
epithelial cell of cervix | 3.82e-08 | 2 |
endo-epithelial cell | 5.84e-08 | 42 |
endothelial cell of sinusoid | 7.03e-08 | 2 |
endothelial cell of hepatic sinusoid | 7.03e-08 | 2 |
epithelial cell of large intestine | 8.60e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.76e-14 | 4 |
wall of intestine | 2.76e-14 | 4 |
gastrointestinal system mucosa | 2.76e-14 | 4 |
gastrointestinal system epithelium | 2.76e-14 | 4 |
intestinal epithelium | 2.76e-14 | 4 |
endo-epithelium | 1.39e-09 | 82 |
epithelial sac | 1.12e-08 | 25 |
gut epithelium | 1.68e-08 | 54 |
sac | 2.37e-08 | 26 |
uterine epithelium | 3.82e-08 | 2 |
cervix epithelium | 3.82e-08 | 2 |
bronchoalveolar duct junction | 4.38e-08 | 2 |
alveolar duct | 4.38e-08 | 2 |
bronchiole | 4.38e-08 | 2 |
subdivision of digestive tract | 4.56e-08 | 118 |
hepatic sinusoid | 7.03e-08 | 2 |
abdomen blood vessel | 7.03e-08 | 2 |
sinusoid | 7.03e-08 | 2 |
abdominal segment blood vessel | 7.03e-08 | 2 |
epithelium of mucosa | 1.35e-07 | 8 |
simple columnar epithelium | 7.64e-07 | 9 |
liver | 9.74e-07 | 19 |
digestive gland | 9.74e-07 | 19 |
liver bud | 9.74e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 2.58e-15 | 14 |
carcinoma | 8.01e-14 | 106 |
cell type cancer | 6.56e-10 | 143 |
lung adenocarcinoma | 4.38e-08 | 2 |