FFCP PHASE1:Hg19::chr15:50716576..50716624,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9101 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12631 | |||
|TSSclassifier=strong | |||
|UniProt=P40818,B4DKA8,B3KRK3,Q05DF5 | |||
|association_with_transcript=0bp_to_ENST00000307179,ENST00000396444,ENST00000425032,ENST00000433963,ENST00000558892,ENST00000559329,ENST00000560297,ENST00000560730,ENST00000560885,ENST00000560954,NM_001128610,NM_001128611,NM_005154,uc001zyk.1,uc001zyl.3,uc001zym.3,uc001zyn.3,uc010ufh.1_5end | |||
|coexpression_cluster_id=C176 | |||
|description=CAGE_peak_1_at_USP8_5end | |||
|id=chr15:50716576..50716624,+ | |||
|ontology_enrichment_celltype=CL:0000738!8.12e-46!140;CL:0000037!1.80e-38!172;CL:0000566!1.80e-38!172;CL:0002031!2.81e-38!124;CL:0002032!2.14e-36!165;CL:0000837!2.14e-36!165;CL:0002087!9.60e-36!119;CL:0000988!2.79e-33!182;CL:0000766!5.20e-31!76;CL:0000839!1.85e-27!70;CL:0000557!3.50e-27!71;CL:0002009!8.73e-25!65;CL:0000763!1.28e-24!112;CL:0000049!1.28e-24!112;CL:0002194!2.64e-24!63;CL:0000576!2.64e-24!63;CL:0000040!2.64e-24!63;CL:0000559!2.64e-24!63;CL:0002057!6.35e-24!42;CL:0000860!9.23e-24!45;CL:0000838!1.18e-10!52;CL:0000542!1.22e-10!53;CL:0000051!1.22e-10!53;CL:0000134!9.22e-09!358;CL:0002320!9.68e-08!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.60e-18;33!CL:0002057;1.60e-18;33!CL:0000576;2.28e-16;48!CL:0000473;3.19e-15;39!CL:0000234;3.19e-15;39!CL:0000766;2.12e-13;69!CL:0002087;1.44e-11;104!CL:0000738;2.71e-10;136!CL:0000236;1.76e-07;13!CL:0000542;5.17e-07;53!CL:0000988;8.44e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.02e-45,136;CL:0002031,3.42e-38,120;CL:0000037,3.55e-38,168;CL:0002032,4.12e-36,161;CL:0000837,4.12e-36,161;CL:0002087,1.17e-35,115;CL:0000988,8.06e-34,177;CL:0000766,3.19e-31,72;CL:0000839,1.19e-27,66;CL:0000557,2.37e-27,67;CL:0002009,5.79e-25,61;CL:0002194,1.70e-24,59;CL:0000576,1.70e-24,59;CL:0000040,1.70e-24,59;CL:0000559,1.70e-24,59;CL:0000763,1.98e-24,108;CL:0000049,1.98e-24,108;CL:0000860,6.35e-24,42;CL:0002057,6.35e-24,42;CL:0000473,2.02e-23,48;CL:0000234,2.02e-23,48;CL:0000838,1.18e-10,52;CL:0000542,1.22e-10,53;CL:0000051,1.22e-10,53;CL:0000134,9.24e-09,354;CL:0002320,9.77e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.05e-17;42!CL:0000049;3.82e-07;108!CL:0000051;5.17e-07;53 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.28e-28!102;UBERON:0003061!2.28e-28!102;UBERON:0002193!3.68e-24!112;UBERON:0002371!3.27e-22!80;UBERON:0001474!2.13e-20!86;UBERON:0004765!4.25e-17!101;UBERON:0001434!4.25e-17!101;UBERON:0002405!6.86e-16!115;UBERON:0007023!7.81e-10!115;UBERON:0002384!6.41e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.79e-28,98;UBERON:0003061,2.79e-28,98;UBERON:0002193,5.76e-24,108;UBERON:0002371,3.67e-22,76;UBERON:0001474,2.86e-20,82;UBERON:0002405,2.04e-19,93;UBERON:0004765,2.36e-17,90;UBERON:0001434,7.18e-16,100;UBERON:0007023,1.33e-09,114;UBERON:0002384,6.52e-07,371 | |||
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| |||
|short_description=p1@USP8 | |||
}} |
Revision as of 23:30, 11 January 2014
Short description: | p1@USP8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USP8_5end |
Coexpression cluster: | C176_Eosinophils_Neutrophils_Mast_CD14_CD4_Basophils_CD19 |
Association with transcript: | 0bp_to_ENST00000307179, ENST00000396444, ENST00000425032, ENST00000433963, ENST00000558892, ENST00000559329, ENST00000560297, ENST00000560730, ENST00000560885, ENST00000560954, NM_001128610, NM_001128611, NM_005154, uc001zyk.1, uc001zyl.3, uc001zym.3, uc001zyn.3, uc010ufh.1_5end |
EntrezGene: | USP8 |
HGNC: | 12631 |
UniProt: | P40818B4DKA8B3KRK3Q05DF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.02e-45 | 136 |
hematopoietic lineage restricted progenitor cell | 3.42e-38 | 120 |
hematopoietic stem cell | 3.55e-38 | 168 |
hematopoietic oligopotent progenitor cell | 4.12e-36 | 161 |
hematopoietic multipotent progenitor cell | 4.12e-36 | 161 |
nongranular leukocyte | 1.17e-35 | 115 |
hematopoietic cell | 8.06e-34 | 177 |
myeloid leukocyte | 3.19e-31 | 72 |
myeloid lineage restricted progenitor cell | 1.19e-27 | 66 |
granulocyte monocyte progenitor cell | 2.37e-27 | 67 |
macrophage dendritic cell progenitor | 5.79e-25 | 61 |
monopoietic cell | 1.70e-24 | 59 |
monocyte | 1.70e-24 | 59 |
monoblast | 1.70e-24 | 59 |
promonocyte | 1.70e-24 | 59 |
myeloid cell | 1.98e-24 | 108 |
common myeloid progenitor | 1.98e-24 | 108 |
classical monocyte | 6.35e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.35e-24 | 42 |
defensive cell | 2.02e-23 | 48 |
phagocyte | 2.02e-23 | 48 |
lymphoid lineage restricted progenitor cell | 1.18e-10 | 52 |
lymphocyte | 1.22e-10 | 53 |
common lymphoid progenitor | 1.22e-10 | 53 |
mesenchymal cell | 9.24e-09 | 354 |
connective tissue cell | 9.77e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.79e-28 | 98 |
blood island | 2.79e-28 | 98 |
hemolymphoid system | 5.76e-24 | 108 |
bone marrow | 3.67e-22 | 76 |
bone element | 2.86e-20 | 82 |
immune system | 2.04e-19 | 93 |
skeletal element | 2.36e-17 | 90 |
skeletal system | 7.18e-16 | 100 |
adult organism | 1.33e-09 | 114 |
connective tissue | 6.52e-07 | 371 |