FFCP PHASE1:Hg19::chr19:3568988..3569004,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:3568988..3569004,+ | |||
|id=chr19:3568988..3569004,+ | |||
|ontology_enrichment_celltype=CL:0002150!8.98e-11!3;CL:0000861!8.98e-11!3;CL:0000990!1.01e-10!8;CL:0000453!2.28e-09!5;CL:0000875!2.88e-09!3;CL:0002396!2.88e-09!3;CL:0000451!1.19e-08!10;CL:0000763!1.30e-08!112;CL:0000049!1.30e-08!112;CL:0000766!7.74e-08!76;CL:0000235!1.17e-07!10;CL:0000557!1.60e-07!71 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.23e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.56e-28;29 | |||
|ontology_enrichment_disease=DOID:305!9.08e-13!106;DOID:0050687!8.44e-08!143;DOID:1749!3.58e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.72e-10;14!DOID:3151;8.99e-10;1!DOID:3149;8.99e-10;1!DOID:4362;3.13e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.45e-23,106;DOID:0050687,1.07e-16,143;DOID:162,1.40e-14,235;DOID:14566,3.30e-14,239;DOID:1749,6.04e-10,14;DOID:3151,8.24e-10,1;DOID:3149,8.24e-10,1;DOID:4362,3.13e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.86e-28!9;UBERON:0001557!3.39e-15!19;UBERON:0003729!6.05e-10!5;UBERON:0008947!2.84e-09!38;UBERON:0003258!2.84e-09!38;UBERON:0000072!1.42e-08!46;UBERON:0003343!9.50e-08!4;UBERON:0004785!9.50e-08!4;UBERON:0000065!4.70e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.66e-77;9!UBERON:0001557;2.66e-77;9!UBERON:0000072;3.36e-20;37!UBERON:0003343;1.18e-19;4!UBERON:0004785;1.18e-19;4!UBERON:0000065;1.19e-16;44!UBERON:0000974;2.61e-13;6!UBERON:0001004;1.10e-12;65!UBERON:0000997;8.99e-10;1!UBERON:0005056;8.99e-10;1!UBERON:0004176;8.99e-10;1!UBERON:0000002;5.42e-07;6!UBERON:0001560;5.42e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.67e-77,9;UBERON:0001557,2.34e-44,19;UBERON:0008947,2.13e-21,38;UBERON:0003258,2.13e-21,38;UBERON:0000072,1.30e-20,47;UBERON:0003343,1.00e-19,4;UBERON:0004785,1.00e-19,4;UBERON:0000065,1.03e-17,54;UBERON:0001004,1.41e-17,74;UBERON:0001041,2.21e-12,87;UBERON:0000997,7.55e-10,1;UBERON:0005056,7.55e-10,1;UBERON:0001007,3.18e-09,145;UBERON:0001555,3.18e-09,145;UBERON:0007026,3.18e-09,145;UBERON:0004921,1.62e-08,118;UBERON:0000974,3.17e-08,10;UBERON:0004119,3.86e-08,160;UBERON:0000925,3.86e-08,160;UBERON:0006595,3.86e-08,160;UBERON:0000002,5.42e-07,6;UBERON:0001560,5.42e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08719240171329,4.55178663210875,3.37415441836875,5.73528658208448,6.75426276686459,4.50814176311084,7.82021587328954,7.2601942096378,5.00171304030308,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0.148631162288728,0,0.335964256397719,0,0,0,0,0.492663237895943,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,16.8854618454435,29.4184100427853,0,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0.37950746544837,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17398771359254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46988596121566,0,0,0,13.2556173866047,14.2524168318062,11.0855867021832,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,1.34173875039706,0,0,0,1.07572403599707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.531459361253452,0.163565394255844,0,0,0.633936370075881,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25739752552359,1.29766695682514,0,1.84841065840541,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09876427442351,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0,0.112131862580613,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:3568988..3569004,+ | |||
}} |
Revision as of 20:32, 20 January 2014
Short description: | p@chr19:3568988..3569004, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:3568988..3569004, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.23e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.67e-77 | 9 |
upper respiratory tract | 2.34e-44 | 19 |
respiratory primordium | 2.13e-21 | 38 |
endoderm of foregut | 2.13e-21 | 38 |
segment of respiratory tract | 1.30e-20 | 47 |
mucosa of oral region | 1.00e-19 | 4 |
respiratory system mucosa | 1.00e-19 | 4 |
respiratory tract | 1.03e-17 | 54 |
respiratory system | 1.41e-17 | 74 |
foregut | 2.21e-12 | 87 |
mammalian vulva | 7.55e-10 | 1 |
external female genitalia | 7.55e-10 | 1 |
digestive system | 3.18e-09 | 145 |
digestive tract | 3.18e-09 | 145 |
primitive gut | 3.18e-09 | 145 |
subdivision of digestive tract | 1.62e-08 | 118 |
neck | 3.17e-08 | 10 |
endoderm-derived structure | 3.86e-08 | 160 |
endoderm | 3.86e-08 | 160 |
presumptive endoderm | 3.86e-08 | 160 |
uterine cervix | 5.42e-07 | 6 |
neck of organ | 5.42e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.45e-23 | 106 |
cell type cancer | 1.07e-16 | 143 |
cancer | 1.40e-14 | 235 |
disease of cellular proliferation | 3.30e-14 | 239 |
squamous cell carcinoma | 6.04e-10 | 14 |
skin squamous cell carcinoma | 8.24e-10 | 1 |
keratoacanthoma | 8.24e-10 | 1 |
cervical cancer | 3.13e-08 | 5 |