FFCP PHASE1:Hg19::chr19:45281215..45281224,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=27bp_to_CU688574_5end | |||
|coexpression_cluster_id=C1455 | |||
|description=CAGE_peak_2_at_CU688574_5end | |||
|id=chr19:45281215..45281224,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.83e-28!254;CL:0002076!5.28e-26!43;CL:0000223!2.71e-20!59;CL:0002368!3.39e-14!13;CL:0002251!3.26e-13!21;CL:0002159!2.55e-11!13;CL:0002202!2.70e-09!9;CL:0002632!2.70e-09!9;CL:0002077!2.79e-09!33;CL:0000244!6.89e-07!4;CL:0000731!6.89e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.81e-26;42!CL:0002368;2.03e-22;13!CL:0002202;1.41e-20;9!CL:0002632;1.41e-20;9!CL:0002159;3.69e-16;14!CL:0002328;1.78e-12;3!CL:0000307;1.85e-12;3!CL:0002231;1.04e-11;3!CL:0002251;1.01e-10;20!CL:0000362;3.30e-10;9!CL:0000575;2.98e-09;2!CL:0000244;5.49e-09;4!CL:0000731;5.49e-09;4!CL:0002077;2.10e-08;34!CL:0000317;4.04e-08;2!CL:1000448;4.04e-08;2!CL:0002308;4.04e-08;2!CL:0002140;4.04e-08;2!CL:0000312;1.74e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.42e-34,42;CL:0000066,9.64e-27,253;CL:0000223,7.88e-26,58;CL:0002368,1.02e-22,13;CL:0002202,9.35e-21,9;CL:0002632,9.35e-21,9;CL:0002159,2.45e-16,14;CL:0002328,9.50e-13,3;CL:0000068,1.63e-12,3;CL:0000069,1.63e-12,3;CL:0000307,1.63e-12,3;CL:0000377,1.63e-12,3;CL:0002231,1.24e-11,3;CL:0002251,1.23e-10,20;CL:0000362,2.92e-10,9;CL:0002077,2.21e-09,34;CL:0000575,3.18e-09,2;CL:0000244,4.49e-09,4;CL:0000731,4.49e-09,4;CL:0000317,3.14e-08,2;CL:1000448,3.14e-08,2;CL:0002308,3.14e-08,2;CL:0002140,3.14e-08,2;CL:0002321,1.20e-07,250;CL:0000312,1.77e-07,5;CL:0000076,3.78e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;1.60e-14;58!CL:0000377;1.85e-12;3 | |||
|ontology_enrichment_disease=DOID:1749!2.32e-11!14;DOID:305!2.31e-10!106;DOID:0050687!2.78e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.33e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.18e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.87e-18!169;UBERON:0000925!2.87e-18!169;UBERON:0006595!2.87e-18!169;UBERON:0001007!1.96e-13!155;UBERON:0001555!1.96e-13!155;UBERON:0007026!1.96e-13!155;UBERON:0000344!2.20e-11!12;UBERON:0004921!9.46e-10!129;UBERON:0004185!9.46e-10!129;UBERON:0005911!2.78e-09!82;UBERON:0000161!4.05e-09!35;UBERON:0006554!4.35e-09!44;UBERON:0001008!9.21e-09!45;UBERON:0000464!1.63e-08!104;UBERON:0007196!1.82e-08!14;UBERON:0001558!1.82e-08!14;UBERON:0000077!2.09e-08!130;UBERON:0000466!3.77e-08!126;UBERON:0000365!3.84e-08!5;UBERON:0003729!1.05e-07!5;UBERON:0001004!1.62e-07!72;UBERON:0002294!3.45e-07!7;UBERON:0001173!3.45e-07!7;UBERON:0004912!3.45e-07!7;UBERON:0005153!5.51e-07!37;UBERON:0000062!8.20e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000485;2.15e-13;7!UBERON:0004815;1.78e-12;3!UBERON:0002031;1.78e-12;3!UBERON:0007196;6.44e-12;15!UBERON:0001558;6.44e-12;15!UBERON:0005911;1.97e-11;36!UBERON:0003929;1.16e-08;7!UBERON:0000344;3.93e-08;20!UBERON:0002419;4.04e-08;2!UBERON:0007771;4.04e-08;2!UBERON:0003297;4.04e-08;2!UBERON:0001821;4.04e-08;2!UBERON:0003487;4.04e-08;2!UBERON:0001820;4.04e-08;2!UBERON:0004807;9.82e-08;22!UBERON:0000486;1.19e-07;12!UBERON:0002185;1.22e-07;5!UBERON:0003350;1.40e-07;8!UBERON:0005178;2.55e-07;34!UBERON:0002224;2.55e-07;34!UBERON:0000365;2.88e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,9.50e-13,3;UBERON:0002031,9.50e-13,3;UBERON:0007196,5.09e-12,15;UBERON:0001558,5.09e-12,15;UBERON:0000485,1.70e-10,9;UBERON:0004119,2.52e-09,160;UBERON:0000925,2.52e-09,160;UBERON:0006595,2.52e-09,160;UBERON:0005157,4.19e-09,47;UBERON:0005153,2.97e-08,37;UBERON:0002419,3.14e-08,2;UBERON:0007771,3.14e-08,2;UBERON:0003297,3.14e-08,2;UBERON:0001821,3.14e-08,2;UBERON:0003487,3.14e-08,2;UBERON:0001820,3.14e-08,2;UBERON:0005089,3.14e-08,2;UBERON:0005088,3.14e-08,2;UBERON:0000344,3.70e-08,20;UBERON:0005911,4.94e-08,82;UBERON:0002185,8.45e-08,5;UBERON:0005178,8.91e-08,34;UBERON:0002224,8.91e-08,34;UBERON:0003350,1.12e-07,8;UBERON:0005181,1.66e-07,35;UBERON:0000365,2.45e-07,5;UBERON:0001004,5.40e-07,74 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0.154816123316076,4.59710612239464,4.2168828628955,1.84877005083394,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.261958150995425,3.27865759463288,5.19098219898201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73934767846967,0.818238361772504,4.30206893083506,0,0,0.232387885739037,0.10366105501537,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59884970106048,0,2.41450627898976,3.37205259772859,1.3068766413512,0.833296006426766,0,0,1.44331342025273,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,1.84307626415102,1.25381931783988,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1754700926492,1.60405176242628,1.19705285616665,0,0,0,1.35359883872224,0.0770153371044148,0,1.46139224653261,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0,0,1.72279661398852,1.30012049207304,0,0,0,0,0,0,0,0,0,0.495854746082934,1.34533047155574,1.78657797492418,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21310859268678,2.68120910214315,2.17781969722645,0.0941438007767792,1.72202149068492,3.36942951335251,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269605053441981,0.895105873378046,0,0.0986434056369336,0,0,0,0,0,0,0.699679999969566,0.724999575434793,1.365521379426,2.03402920234213,2.12748913591143,0,0,0,0,0,0,0,0,0,0,1.39423744278603,0.230850775511391,0,0.23056390438806,0.987334088507493,1.08647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0.353830258013357,0,0,0,0,0.067401132980677,0,0,0,2.15231080825299,0,0.394584402849391,1.20990716048664,0,0,0,0,0,0,0,0,0,0,1.04135843001079,2.54780233277382,0.522355239482415,0,0,0,0,0,0.290967049465258,0,0,0,0,0,1.75996244461323,0.881747022766871,0.213452994739353,0,1.00863292007874,0,0.171594997861965,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0.275078873194468,0,0,1.5476039091159,0.0607495566580247,0.670869375198532,0.236417121897595,0.472091293214983,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47918486351039,0,0,0,0,0,2.23807212351111,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25739752552359,1.06172751012966,0.183428598521679,0.924205329202706,0,0,0,0,0,0.781514011233092,0.523813388962845,0,0.739280431085226,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0,0.354809480650555,0,0,0,0.0657727735628491,0.945550727071746,0.222462803784138,0.078493092850514,0,0.560544326627578,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,1.23040974977572,0.196300467230486,0.365753774946808,0,0,0,0,0,0,0,0,0,0,1.00326405540328,0.655678681511872,3.76253837089218,0,0.942706188406504,0,0,0,0,0,0,0,1.07132363163395,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.203977659483963,0.534434810531121,0,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,0,0,0.224263725161227,0,0,0.217716747896961,0,0.5388164241167,0.645499848534087,0.332660356546013,0.976839223331694,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p2@CU688574 | |||
}} |
Revision as of 23:48, 20 January 2014
Short description: | p2@CU688574 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CU688574_5end |
Coexpression cluster: | C1455_Tracheal_Corneal_Keratinocyte_Mammary_Urothelial_Bronchial_Esophageal |
Association with transcript: | 27bp_to_CU688574_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.42e-34 | 42 |
epithelial cell | 9.64e-27 | 253 |
endodermal cell | 7.88e-26 | 58 |
respiratory epithelial cell | 1.02e-22 | 13 |
epithelial cell of tracheobronchial tree | 9.35e-21 | 9 |
epithelial cell of lower respiratory tract | 9.35e-21 | 9 |
general ecto-epithelial cell | 2.45e-16 | 14 |
bronchial epithelial cell | 9.50e-13 | 3 |
duct epithelial cell | 1.63e-12 | 3 |
branched duct epithelial cell | 1.63e-12 | 3 |
tracheal epithelial cell | 1.63e-12 | 3 |
tracheoblast | 1.63e-12 | 3 |
epithelial cell of prostate | 1.24e-11 | 3 |
epithelial cell of alimentary canal | 1.23e-10 | 20 |
epidermal cell | 2.92e-10 | 9 |
ecto-epithelial cell | 2.21e-09 | 34 |
corneal epithelial cell | 3.18e-09 | 2 |
transitional epithelial cell | 4.49e-09 | 4 |
urothelial cell | 4.49e-09 | 4 |
sebum secreting cell | 3.14e-08 | 2 |
epithelial cell of sweat gland | 3.14e-08 | 2 |
epithelial cell of skin gland | 3.14e-08 | 2 |
acinar cell of sebaceous gland | 3.14e-08 | 2 |
embryonic cell | 1.20e-07 | 250 |
keratinocyte | 1.77e-07 | 5 |
squamous epithelial cell | 3.78e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 9.50e-13 | 3 |
epithelium of bronchus | 9.50e-13 | 3 |
tracheobronchial tree | 5.09e-12 | 15 |
lower respiratory tract | 5.09e-12 | 15 |
simple columnar epithelium | 1.70e-10 | 9 |
endoderm-derived structure | 2.52e-09 | 160 |
endoderm | 2.52e-09 | 160 |
presumptive endoderm | 2.52e-09 | 160 |
epithelial fold | 4.19e-09 | 47 |
epithelial bud | 2.97e-08 | 37 |
skin gland | 3.14e-08 | 2 |
epidermis gland | 3.14e-08 | 2 |
gland of integumental system | 3.14e-08 | 2 |
sebaceous gland | 3.14e-08 | 2 |
skin sebaceous gland | 3.14e-08 | 2 |
sweat gland | 3.14e-08 | 2 |
sweat gland placode | 3.14e-08 | 2 |
sebaceous gland placode | 3.14e-08 | 2 |
mucosa | 3.70e-08 | 20 |
endo-epithelium | 4.94e-08 | 82 |
bronchus | 8.45e-08 | 5 |
thoracic cavity element | 8.91e-08 | 34 |
thoracic cavity | 8.91e-08 | 34 |
epithelium of mucosa | 1.12e-07 | 8 |
thoracic segment organ | 1.66e-07 | 35 |
urothelium | 2.45e-07 | 5 |
respiratory system | 5.40e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.18e-09 | 14 |