FFCP PHASE1:Hg19::chr19:56091598..56091612,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:56091598..56091612,- | |||
|id=chr19:56091598..56091612,- | |||
|ontology_enrichment_celltype=CL:0000095!1.33e-07!17;CL:0000123!1.33e-07!17;CL:0000243!3.09e-07!15;CL:0000125!3.09e-07!15;CL:0000030!3.09e-07!15;CL:0000339!3.09e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002097;5.04e-34;2!CL:0000174;3.27e-23;3!CL:0000138;2.19e-12;6!CL:0002540;2.74e-12;6!CL:0000153;1.04e-08;9!CL:0000447;1.04e-08;9!CL:0000150;1.12e-08;9!CL:0000163;1.12e-08;9!CL:0000151;5.42e-08;36!CL:0002092;6.56e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002097,5.04e-34,2;CL:0000174,3.27e-23,3;CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0002540,2.74e-12,6;CL:0000153,1.04e-08,9;CL:0000447,1.04e-08,9;CL:0000150,1.12e-08,9;CL:0000163,1.12e-08,9;CL:0000151,1.78e-08,36;CL:0002092,6.56e-08,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.23e-66;1!DOID:4549;1.23e-66;1!DOID:5861;1.23e-66;1!DOID:6496;1.23e-66;1!DOID:201;2.19e-12;6!DOID:0060100;2.19e-12;6!DOID:170;2.45e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6;DOID:170,2.45e-12,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.62e-23;3!UBERON:0004755;2.62e-23;3!UBERON:0002369;3.27e-23;3!UBERON:0001235;3.27e-23;3!UBERON:0006858;3.27e-23;3!UBERON:0001474;9.05e-16;18!UBERON:0004765;2.77e-11;26!UBERON:0001434;5.59e-08;36!UBERON:0002371;8.38e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0002369,3.27e-23,3;UBERON:0001235,3.27e-23,3;UBERON:0006858,3.27e-23,3 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0.730310090387373,0,0.123121058076788,0,0.313454721478088,0,0.136874425072884,0.502170558379211,0,0,0.0787107813136792,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0,0,0,0.221729397462564,0,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0.184099797284599,0.323292113637624,0,0.201504196455281,0,0,0,0.573609190778008,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0,0.285955987316295,0.542621605391443,0,0,0,0,0.904318131178758,0,0.299918973546171,0,0,0,0.718874566474748,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0,0.460385919864187,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0.241718899183244,0.40101294060657,0,0,0,0,0,0.231046011313244,0,0,0.316654886678627,0,0.170093705276516,0,0,0.812839312631559,0,0,0,0,0,0,0,0.984043937099117,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.294747123039363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0.347119476670262,0,0,0,0.51595809741485,0.0967563312890851,0,0,0,3.17722056089401,0,0,0,0,0.391102765469606,0,0,0,0,0.572682980829578,0,0,0,0,0.407712618220842,0.104602846312333,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0.0674035438541849,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0.26446520348538,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.221858103073705,0,0.138348634936231,0.124980407962107,0,0,0,0,0.144921028610825,0.298509605773748,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0.450772826991655,0.380805212168795,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,2.57329909649911,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0.3062454773532,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0.647428837187895,0,0,0,0,0,0.237840181555137,0,0.219881033490858,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr19:56091598..56091612,- | |||
}} |
Revision as of 01:14, 21 January 2014
Short description: | p@chr19:56091598..56091612, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:56091598..56091612, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cortical cell of adrenal gland | 5.04e-34 | 2 |
steroid hormone secreting cell | 3.27e-23 | 3 |
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
mesenchymal stem cell of the bone marrow | 2.74e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
glandular epithelial cell | 1.12e-08 | 9 |
endocrine cell | 1.12e-08 | 9 |
secretory cell | 1.78e-08 | 36 |
bone marrow cell | 6.56e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
adrenal gland | 3.27e-23 | 3 |
adrenal cortex | 3.27e-23 | 3 |
adrenal/interrenal gland | 3.27e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |
endocrine gland cancer | 2.45e-12 | 6 |