FFCP PHASE1:Hg19::chr20:6034241..6034256,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C548 | |||
|description=CAGE_peak_at_chr20:6034241..6034256,- | |||
|id=chr20:6034241..6034256,- | |||
|ontology_enrichment_celltype=CL:1000507!7.82e-38!12;CL:1000494!7.82e-38!12;CL:1000449!4.06e-28!16;CL:1000497!7.08e-25!18;CL:0002518!7.08e-25!18;CL:0000077!6.62e-18!19;CL:0002681!7.83e-14!13;CL:0002584!7.83e-14!13;CL:0000239!9.10e-11!3;CL:1000615!9.10e-11!3;CL:0002306!9.10e-11!3;CL:0000650!1.11e-10!3;CL:1000618!1.11e-10!3;CL:1001318!1.11e-10!3;CL:0002173!1.11e-10!3;CL:1000500!1.11e-10!3;CL:0000669!9.70e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:1000507;7.73e-45;10!CL:1000494;7.73e-45;10!CL:1000449;5.32e-30;15!CL:1000497;1.67e-26;17!CL:0002518;1.67e-26;17!CL:0000239;1.01e-24;3!CL:1000615;1.01e-24;3!CL:0002306;1.01e-24;3!CL:0002681;4.83e-14;12!CL:0002584;4.83e-14;12!CL:0000650;2.85e-10;2!CL:1000500;2.85e-10;2!CL:1000618;2.85e-10;2!CL:1001318;2.85e-10;2!CL:0002173;2.85e-10;2!CL:0000077;2.97e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.39e-45,10;CL:1000494,7.39e-45,10;CL:1000449,5.16e-30,15;CL:1000497,1.63e-26,17;CL:0002518,1.63e-26,17;CL:0000239,1.29e-24,3;CL:1000615,1.29e-24,3;CL:0002306,1.29e-24,3;CL:0002681,4.94e-14,12;CL:0002584,4.94e-14,12;CL:0000650,2.49e-10,2;CL:1000500,2.49e-10,2;CL:1000618,2.49e-10,2;CL:1001318,2.49e-10,2;CL:0002173,2.49e-10,2;CL:0000077,3.15e-09,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.09e-13!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.25e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.07e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0009773!7.82e-38!12;UBERON:0001231!7.82e-38!12;UBERON:0004810!7.82e-38!12;UBERON:0004211!4.06e-28!16;UBERON:0001285!4.06e-28!16;UBERON:0007684!4.06e-28!16;UBERON:0003220!4.06e-28!16;UBERON:0004208!4.06e-28!16;UBERON:0006555!2.11e-26!17;UBERON:0005103!2.11e-26!17;UBERON:0000083!2.11e-26!17;UBERON:0009201!2.11e-26!17;UBERON:0004819!2.11e-26!17;UBERON:0006553!2.11e-26!17;UBERON:0003074!2.11e-26!17;UBERON:0003060!2.11e-26!17;UBERON:0000080!7.08e-25!18;UBERON:0002120!7.08e-25!18;UBERON:0004875!7.08e-25!18;UBERON:0005721!7.08e-25!18;UBERON:0005754!7.08e-25!18;UBERON:0007297!7.08e-25!18;UBERON:0004876!2.78e-22!20;UBERON:0003887!3.61e-21!21;UBERON:0002113!2.46e-20!27;UBERON:0003918!2.46e-20!27;UBERON:0005095!2.46e-20!27;UBERON:0007687!2.46e-20!27;UBERON:0000489!6.08e-17!32;UBERON:0000058!6.90e-17!26;UBERON:0001851!9.76e-16!16;UBERON:0003064!1.68e-14!37;UBERON:0005172!6.55e-14!55;UBERON:0005173!6.55e-14!55;UBERON:0001225!7.83e-14!13;UBERON:0008987!7.83e-14!13;UBERON:0002417!2.36e-12!61;UBERON:0000916!2.36e-12!61;UBERON:0003886!5.14e-12!63;UBERON:0006554!6.09e-12!44;UBERON:0001008!1.20e-11!45;UBERON:0006853!9.10e-11!3;UBERON:0007685!9.10e-11!3;UBERON:0004134!9.10e-11!3;UBERON:0003567!1.11e-10!3;UBERON:0003838!1.11e-10!3;UBERON:0005169!1.11e-10!3;UBERON:0002321!1.11e-10!3;UBERON:0005215!1.11e-10!3;UBERON:0002303!1.11e-10!3;UBERON:0002319!1.11e-10!3;UBERON:0002553!1.27e-10!70;UBERON:0000353!1.56e-10!17;UBERON:0002119!5.24e-08!4;UBERON:0004531!5.24e-08!4;UBERON:0003103!4.11e-07!69;UBERON:0003891!9.70e-07!5;UBERON:0003586!9.70e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;7.73e-45;10!UBERON:0009773;7.73e-45;10!UBERON:0001231;7.73e-45;10!UBERON:0004810;7.73e-45;10!UBERON:0006555;5.32e-30;15!UBERON:0004819;5.32e-30;15!UBERON:0001285;5.32e-30;15!UBERON:0007684;5.32e-30;15!UBERON:0006853;1.01e-24;3!UBERON:0007685;1.01e-24;3!UBERON:0004134;1.01e-24;3!UBERON:0002113;7.74e-19;24!UBERON:0011143;7.74e-19;24!UBERON:0000489;1.28e-15;29!UBERON:0006554;4.20e-15;30!UBERON:0001008;4.20e-15;30!UBERON:0001225;4.83e-14;12!UBERON:0008987;4.83e-14;12!UBERON:0001851;2.30e-11;15!UBERON:0000353;2.30e-11;15!UBERON:0003567;2.85e-10;2!UBERON:0003838;2.85e-10;2!UBERON:0003586;2.85e-10;2!UBERON:0005169;2.85e-10;2!UBERON:0002321;2.85e-10;2!UBERON:0005215;2.85e-10;2!UBERON:0002303;2.85e-10;2!UBERON:0002319;2.85e-10;2!UBERON:0005172;3.16e-08;52!UBERON:0005173;3.16e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,7.39e-45,10;UBERON:0004211,5.16e-30,15;UBERON:0009773,5.16e-30,15;UBERON:0001231,5.16e-30,15;UBERON:0001285,5.16e-30,15;UBERON:0007684,5.16e-30,15;UBERON:0004208,5.16e-30,15;UBERON:0006555,3.73e-28,16;UBERON:0004819,3.73e-28,16;UBERON:0006853,1.29e-24,3;UBERON:0007685,1.29e-24,3;UBERON:0004134,1.29e-24,3;UBERON:0002113,2.07e-17,26;UBERON:0003918,2.07e-17,26;UBERON:0011143,2.07e-17,26;UBERON:0005095,2.07e-17,26;UBERON:0007687,2.07e-17,26;UBERON:0000489,1.26e-14,31;UBERON:0001225,4.94e-14,12;UBERON:0008987,4.94e-14,12;UBERON:0001851,2.34e-11,15;UBERON:0000353,2.34e-11,15;UBERON:0003567,2.49e-10,2;UBERON:0003838,2.49e-10,2;UBERON:0003586,2.49e-10,2;UBERON:0005169,2.49e-10,2;UBERON:0002321,2.49e-10,2;UBERON:0005215,2.49e-10,2;UBERON:0002303,2.49e-10,2;UBERON:0002319,2.49e-10,2;UBERON:0006554,1.12e-09,47;UBERON:0001008,1.78e-09,48;UBERON:0005172,1.99e-08,54;UBERON:0005173,1.99e-08,54;UBERON:0002417,1.38e-07,60;UBERON:0000916,1.38e-07,60 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41151501647669,0.871533458600294,5.69846049737725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385076685522074,2.35304930753057,2.92278449306521,0.527758144464379,0,0,0,0,1.35473218771926,0.501689773854853,1.27438136522519,0,1.34324852833307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0.310525913752519,0,0,0,1.35231848097497,1.52322084867518,0,0,2.14821114084977,0,0,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,1.23520578864389,0.877136198314828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:6034241..6034256,- | |||
}} |
Revision as of 10:10, 21 January 2014
Short description: | p@chr20:6034241..6034256, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:6034241..6034256, - |
Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.39e-45 | 10 |
nephron tubule epithelial cell | 7.39e-45 | 10 |
epithelial cell of nephron | 5.16e-30 | 15 |
kidney cell | 1.63e-26 | 17 |
kidney epithelial cell | 1.63e-26 | 17 |
brush border epithelial cell | 1.29e-24 | 3 |
kidney cortex tubule cell | 1.29e-24 | 3 |
epithelial cell of proximal tubule | 1.29e-24 | 3 |
kidney cortical cell | 4.94e-14 | 12 |
renal cortical epithelial cell | 4.94e-14 | 12 |
mesangial cell | 2.49e-10 | 2 |
kidney interstitial cell | 2.49e-10 | 2 |
juxtaglomerular complex cell | 2.49e-10 | 2 |
renal interstitial pericyte | 2.49e-10 | 2 |
extraglomerular mesangial cell | 2.49e-10 | 2 |
mesothelial cell | 3.15e-09 | 19 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.07e-12 | 14 |