FFCP PHASE1:Hg19::chr6:30654107..30654124,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=170954 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=29413 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-312bp_to_ENST00000376424_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_6_at_PPP1R18_5end | |||
|id=chr6:30654107..30654124,- | |||
|ontology_enrichment_celltype=CL:0002371!6.42e-23!591;CL:0000003!2.41e-21!722;CL:0000144!5.08e-21!625;CL:0002057!1.88e-18!42;CL:0000723!5.61e-17!436;CL:0000048!1.21e-16!430;CL:0000860!1.68e-16!45;CL:0000548!2.37e-16!679;CL:0000004!2.37e-16!679;CL:0000255!2.37e-16!679;CL:0000012!1.87e-15!682;CL:0000034!3.91e-15!444;CL:0000063!7.17e-13!578;CL:0000134!7.23e-13!358;CL:0002320!1.53e-12!365;CL:0000766!1.26e-11!76;CL:0002009!4.69e-11!65;CL:0002194!8.25e-11!63;CL:0000576!8.25e-11!63;CL:0000040!8.25e-11!63;CL:0000559!8.25e-11!63;CL:0000219!4.44e-10!390;CL:0000738!1.07e-09!140;CL:0002087!4.40e-09!119;CL:0000557!4.66e-09!71;CL:0000839!3.24e-08!70;CL:0002031!1.78e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.67e-17;33!CL:0002057;2.67e-17;33!CL:0000473;4.00e-14;39!CL:0000234;4.00e-14;39!CL:0000576;2.47e-09;48!CL:0000766;6.97e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.32e-18,48;CL:0000234,1.32e-18,48;CL:0000860,1.43e-18,42;CL:0002057,1.43e-18,42;CL:0000723,2.75e-18,433;CL:0000048,5.94e-18,427;CL:0000034,2.43e-16,441;CL:0000134,1.08e-13,354;CL:0000766,2.37e-13,72;CL:0002320,2.81e-13,361;CL:0002009,6.64e-13,61;CL:0002194,1.15e-12,59;CL:0000576,1.15e-12,59;CL:0000040,1.15e-12,59;CL:0000559,1.15e-12,59;CL:0000219,1.00e-10,386;CL:0000738,1.04e-10,136;CL:0000557,1.20e-10,67;CL:0002087,4.18e-10,115;CL:0000839,8.58e-10,66;CL:0002031,1.84e-08,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!7.16e-17!216;UBERON:0002384!3.51e-11!375;UBERON:0002193!2.88e-10!112;UBERON:0002390!5.17e-10!102;UBERON:0003061!5.17e-10!102;UBERON:0002204!4.13e-09!167;UBERON:0002371!1.82e-08!80;UBERON:0004535!2.09e-07!110;UBERON:0004765!2.30e-07!101;UBERON:0001434!2.30e-07!101;UBERON:0001474!2.74e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,3.30e-16,203;UBERON:0002384,7.12e-12,371;UBERON:0000926,1.03e-11,315;UBERON:0004120,1.03e-11,315;UBERON:0006603,1.03e-11,315;UBERON:0002193,1.72e-11,108;UBERON:0002390,2.76e-11,98;UBERON:0003061,2.76e-11,98;UBERON:0002371,8.86e-10,76;UBERON:0002204,1.05e-09,167;UBERON:0002405,2.03e-08,93;UBERON:0001474,2.08e-08,82;UBERON:0001434,8.38e-08,100;UBERON:0004765,1.00e-07,90;UBERON:0004535,1.30e-07,109 | |||
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| |||
|short_description=p6@PPP1R18 | |||
}} |
Revision as of 10:51, 22 January 2014
Short description: | p6@PPP1R18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PPP1R18_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -312bp_to_ENST00000376424_5end |
EntrezGene: | PPP1R18 |
HGNC: | 29413 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.32e-18 | 48 |
phagocyte | 1.32e-18 | 48 |
classical monocyte | 1.43e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.43e-18 | 42 |
somatic stem cell | 2.75e-18 | 433 |
multi fate stem cell | 5.94e-18 | 427 |
stem cell | 2.43e-16 | 441 |
mesenchymal cell | 1.08e-13 | 354 |
myeloid leukocyte | 2.37e-13 | 72 |
connective tissue cell | 2.81e-13 | 361 |
macrophage dendritic cell progenitor | 6.64e-13 | 61 |
monopoietic cell | 1.15e-12 | 59 |
monocyte | 1.15e-12 | 59 |
monoblast | 1.15e-12 | 59 |
promonocyte | 1.15e-12 | 59 |
motile cell | 1.00e-10 | 386 |
leukocyte | 1.04e-10 | 136 |
granulocyte monocyte progenitor cell | 1.20e-10 | 67 |
nongranular leukocyte | 4.18e-10 | 115 |
myeloid lineage restricted progenitor cell | 8.58e-10 | 66 |
hematopoietic lineage restricted progenitor cell | 1.84e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 3.30e-16 | 203 |
connective tissue | 7.12e-12 | 371 |
mesoderm | 1.03e-11 | 315 |
mesoderm-derived structure | 1.03e-11 | 315 |
presumptive mesoderm | 1.03e-11 | 315 |
hemolymphoid system | 1.72e-11 | 108 |
hematopoietic system | 2.76e-11 | 98 |
blood island | 2.76e-11 | 98 |
bone marrow | 8.86e-10 | 76 |
musculoskeletal system | 1.05e-09 | 167 |
immune system | 2.03e-08 | 93 |
bone element | 2.08e-08 | 82 |
skeletal system | 8.38e-08 | 100 |
skeletal element | 1.00e-07 | 90 |
cardiovascular system | 1.30e-07 | 109 |