FFCP PHASE1:Hg19::chr6:55956449..55956468,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81578 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17025 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000467045,uc003pcr.2_5end | |||
|coexpression_cluster_id=C56 | |||
|description=CAGE_peak_3_at_COL21A1_5end | |||
|id=chr6:55956449..55956468,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;2.57e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,2.71e-11,3 | |||
|ontology_enrichment_development_v019=UBERON:0004140;7.97e-10;1!UBERON:0010226;1.03e-09;1!UBERON:0010227;1.43e-09;1!UBERON:0000358;1.83e-09;1!UBERON:0005062;2.66e-09;4!UBERON:0007284;2.66e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;1.26e-17;2!DOID:178;1.32e-09;1!DOID:326;1.32e-09;1!DOID:3978;1.32e-09;1!DOID:3394;1.32e-09;1!DOID:5844;1.32e-09;1!DOID:5662;2.25e-09;1!DOID:1287;2.89e-09;4!DOID:2513;4.15e-09;1!DOID:3369;4.15e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.26e-17,2;DOID:178,1.32e-09,1;DOID:326,1.32e-09,1;DOID:3978,1.32e-09,1;DOID:3394,1.32e-09,1;DOID:5844,1.32e-09,1;DOID:5662,2.35e-09,1;DOID:1287,2.89e-09,4;DOID:3369,3.00e-09,1;DOID:2513,3.53e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007100!1.10e-10!27;UBERON:0003978!1.66e-08!3;UBERON:0009751!1.66e-08!3;UBERON:0000946!1.66e-08!3;UBERON:0002523!1.66e-08!3;UBERON:0005983!1.66e-08!3;UBERON:0002165!1.66e-08!3;UBERON:0002062!1.66e-08!3;UBERON:0007280!1.66e-08!3;UBERON:0004151!1.83e-08!3;UBERON:0007023!3.89e-08!115;UBERON:0003103!1.76e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.28e-20;25!UBERON:0003688;3.12e-12;6!UBERON:0002358;3.12e-12;6!UBERON:0003684;3.12e-12;6!UBERON:0001178;3.12e-12;6!UBERON:0003978;4.12e-12;3!UBERON:0000946;4.12e-12;3!UBERON:0004151;5.13e-12;3!UBERON:0001723;1.73e-11;3!UBERON:0001033;1.73e-11;3!UBERON:0002146;8.67e-10;1!UBERON:0005623;8.67e-10;1!UBERON:0002084;1.03e-09;1!UBERON:0002082;1.03e-09;1!UBERON:0002135;1.21e-09;1!UBERON:0002079;1.43e-09;1!UBERON:0000948;2.53e-09;22!UBERON:0004457;2.50e-08;9!UBERON:0000042;2.50e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,1.24e-18,27;UBERON:0003688,3.25e-12,6;UBERON:0002358,3.25e-12,6;UBERON:0003684,3.25e-12,6;UBERON:0001178,3.25e-12,6;UBERON:0003978,4.12e-12,3;UBERON:0009751,4.12e-12,3;UBERON:0000946,4.12e-12,3;UBERON:0002523,4.12e-12,3;UBERON:0005983,4.12e-12,3;UBERON:0002165,4.12e-12,3;UBERON:0002062,4.12e-12,3;UBERON:0007280,4.12e-12,3;UBERON:0004151,5.13e-12,3;UBERON:0001723,1.87e-11,3;UBERON:0001033,1.87e-11,3;UBERON:0010056,1.87e-11,3;UBERON:0003103,1.83e-10,68;UBERON:0002146,8.68e-10,1;UBERON:0005623,8.68e-10,1;UBERON:0002084,1.03e-09,1;UBERON:0002082,1.03e-09,1;UBERON:0010226,1.03e-09,1;UBERON:0002135,1.21e-09,1;UBERON:0002079,1.43e-09,1;UBERON:0000948,1.58e-08,24;UBERON:0005498,1.58e-08,24;UBERON:0004140,1.58e-08,24;UBERON:0009881,1.58e-08,24;UBERON:0004141,1.58e-08,24;UBERON:0003084,1.58e-08,24;UBERON:0007005,1.58e-08,24;UBERON:0004139,1.58e-08,24;UBERON:0004291,1.58e-08,24 | |||
|phase1_expression=0,0.214100523890983,1.55049844505568,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.25326102332916,0,0,0,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0.300091096084402,0,0.257640540045629,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0.664225598535437,0,0,0,0,0,0,0,0,0,0,1.24053903909388,0,0.280660094433074,1.15325234330131,0,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0.366277859273374,0.330037999682352,0,0,0,0.096670718292122,0.154048617114644,0,0,0,0,0,0.267096106940212,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,7.57142355354065,0,0,0,0,1.24415835064723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,2.48578814858586,0,0,0.0633107959558787,0,0.240476460754601,0.426905989478705,0,0,0,0,0.14405479798815,0,0,0,0.104602846312333,0,0,0,0,0,0,0,12.2884256559792,38.0406303859395,0.717873024576814,11.5813820289415,23.6074326475114,15.1756591060473,76.9922594697883,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,9.29103924285377,19.8627591109629,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0.762764190934334,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0,0,0,0,0,0,0,3.08678416987353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0.647428837187895,2.15591894398119,4.6392577253528,0.971421986118279,0,0,0,0,0,0.150962843566674,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,4.04709533488359,0,0,0,0,0,1.08858373948481,3.76456631193809,0.0673520530145875,0.0717222053926763,0.332660356546013,0.0814032686109745,0,0,0,4.69281884806909,0.244482888365733,0,0,0.603821380773079,0 | |||
|short_description=p3@COL21A1 | |||
}} |
Revision as of 12:22, 22 January 2014
Short description: | p3@COL21A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL21A1_5end |
Coexpression cluster: | C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue |
Association with transcript: | 0bp_to_ENST00000467045, uc003pcr.2_5end |
EntrezGene: | COL21A1 |
HGNC: | 17025 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 2.71e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 1.24e-18 | 27 |
omentum | 3.25e-12 | 6 |
peritoneum | 3.25e-12 | 6 |
abdominal cavity | 3.25e-12 | 6 |
visceral peritoneum | 3.25e-12 | 6 |
valve | 4.12e-12 | 3 |
cardiac mesenchyme | 4.12e-12 | 3 |
cardial valve | 4.12e-12 | 3 |
tunica intima | 4.12e-12 | 3 |
heart layer | 4.12e-12 | 3 |
endocardium | 4.12e-12 | 3 |
endocardial cushion | 4.12e-12 | 3 |
presumptive endocardium | 4.12e-12 | 3 |
cardiac chamber | 5.13e-12 | 3 |
tongue | 1.87e-11 | 3 |
gustatory system | 1.87e-11 | 3 |
future tongue | 1.87e-11 | 3 |
compound organ | 1.83e-10 | 68 |
pulmonary valve | 8.68e-10 | 1 |
semi-lunar valve | 8.68e-10 | 1 |
heart left ventricle | 1.03e-09 | 1 |
cardiac ventricle | 1.03e-09 | 1 |
future cardiac ventricle | 1.03e-09 | 1 |
mitral valve | 1.21e-09 | 1 |
left cardiac atrium | 1.43e-09 | 1 |
heart | 1.58e-08 | 24 |
primitive heart tube | 1.58e-08 | 24 |
primary heart field | 1.58e-08 | 24 |
anterior lateral plate mesoderm | 1.58e-08 | 24 |
heart tube | 1.58e-08 | 24 |
heart primordium | 1.58e-08 | 24 |
cardiac mesoderm | 1.58e-08 | 24 |
cardiogenic plate | 1.58e-08 | 24 |
heart rudiment | 1.58e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.26e-17 | 2 |
vascular disease | 1.32e-09 | 1 |
ischemia | 1.32e-09 | 1 |
extrinsic cardiomyopathy | 1.32e-09 | 1 |
myocardial ischemia | 1.32e-09 | 1 |
myocardial infarction | 1.32e-09 | 1 |
pleomorphic carcinoma | 2.35e-09 | 1 |
cardiovascular system disease | 2.89e-09 | 4 |
peripheral primitive neuroectodermal tumor | 3.00e-09 | 1 |
basal cell carcinoma | 3.53e-09 | 1 |