FFCP PHASE1:Hg19::chr9:3526360..3526421,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5991 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9984 | |||
|TSSclassifier=strong | |||
|UniProt=F6XM74 | |||
|association_with_transcript=-356bp_to_ENST00000449190_5end | |||
|coexpression_cluster_id=C290 | |||
|description=CAGE_peak_5_at_RFX3_5end | |||
|id=chr9:3526360..3526421,- | |||
|ontology_enrichment_celltype=CL:0000738!1.58e-25!140;CL:0000860!5.65e-25!45;CL:0002057!2.21e-24!42;CL:0000037!2.69e-23!172;CL:0000566!2.69e-23!172;CL:0000988!7.33e-23!182;CL:0002031!1.40e-22!124;CL:0002032!1.28e-21!165;CL:0000837!1.28e-21!165;CL:0002087!4.65e-21!119;CL:0000766!8.78e-17!76;CL:0000557!3.62e-16!71;CL:0002009!8.87e-14!65;CL:0000763!9.32e-14!112;CL:0000049!9.32e-14!112;CL:0000839!1.40e-13!70;CL:0002194!7.41e-13!63;CL:0000576!7.41e-13!63;CL:0000040!7.41e-13!63;CL:0000559!7.41e-13!63;CL:0000838!1.81e-08!52;CL:0000542!7.60e-08!53;CL:0000051!7.60e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.33e-22;33!CL:0002057;1.33e-22;33!CL:0000576;4.83e-16;48!CL:0000473;4.98e-14;39!CL:0000234;4.98e-14;39!CL:0000766;6.32e-12;69!CL:0002087;4.76e-09;104!CL:0000738;1.73e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.10e-30,42;CL:0002057,4.10e-30,42;CL:0000738,5.32e-29,136;CL:0002031,1.03e-25,120;CL:0000037,1.06e-25,168;CL:0000988,9.95e-25,177;CL:0002032,2.62e-24,161;CL:0000837,2.62e-24,161;CL:0002087,7.14e-24,115;CL:0000473,1.42e-23,48;CL:0000234,1.42e-23,48;CL:0000766,2.42e-22,72;CL:0000557,3.62e-21,67;CL:0000839,3.98e-18,66;CL:0002009,4.33e-18,61;CL:0000763,3.33e-17,108;CL:0000049,3.33e-17,108;CL:0002194,6.85e-17,59;CL:0000576,6.85e-17,59;CL:0000040,6.85e-17,59;CL:0000559,6.85e-17,59;CL:0000838,2.07e-07,52;CL:0000542,4.68e-07,53;CL:0000051,4.68e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;7.61e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.22e-18!102;UBERON:0003061!9.22e-18!102;UBERON:0001474!1.51e-17!86;UBERON:0002371!7.34e-17!80;UBERON:0002193!3.51e-16!112;UBERON:0002405!8.80e-15!115;UBERON:0004765!1.28e-14!101;UBERON:0001434!1.28e-14!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.12e-21,82;UBERON:0002371,1.25e-21,76;UBERON:0002390,1.11e-20,98;UBERON:0003061,1.11e-20,98;UBERON:0004765,4.03e-20,90;UBERON:0002193,1.07e-17,108;UBERON:0002405,3.25e-17,93;UBERON:0001434,1.13e-16,100;UBERON:0003081,1.42e-08,203 | |||
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| |||
|short_description=p5@RFX3 | |||
}} |
Revision as of 00:37, 23 January 2014
Short description: | p5@RFX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RFX3_5end |
Coexpression cluster: | C290_Eosinophils_CD14_Basophils_Mast_CD4_CD8_immature |
Association with transcript: | -356bp_to_ENST00000449190_5end |
EntrezGene: | RFX3 |
HGNC: | 9984 |
UniProt: | F6XM74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.10e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.10e-30 | 42 |
leukocyte | 5.32e-29 | 136 |
hematopoietic lineage restricted progenitor cell | 1.03e-25 | 120 |
hematopoietic stem cell | 1.06e-25 | 168 |
hematopoietic cell | 9.95e-25 | 177 |
hematopoietic oligopotent progenitor cell | 2.62e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.62e-24 | 161 |
nongranular leukocyte | 7.14e-24 | 115 |
defensive cell | 1.42e-23 | 48 |
phagocyte | 1.42e-23 | 48 |
myeloid leukocyte | 2.42e-22 | 72 |
granulocyte monocyte progenitor cell | 3.62e-21 | 67 |
myeloid lineage restricted progenitor cell | 3.98e-18 | 66 |
macrophage dendritic cell progenitor | 4.33e-18 | 61 |
myeloid cell | 3.33e-17 | 108 |
common myeloid progenitor | 3.33e-17 | 108 |
monopoietic cell | 6.85e-17 | 59 |
monocyte | 6.85e-17 | 59 |
monoblast | 6.85e-17 | 59 |
promonocyte | 6.85e-17 | 59 |
lymphoid lineage restricted progenitor cell | 2.07e-07 | 52 |
lymphocyte | 4.68e-07 | 53 |
common lymphoid progenitor | 4.68e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.12e-21 | 82 |
bone marrow | 1.25e-21 | 76 |
hematopoietic system | 1.11e-20 | 98 |
blood island | 1.11e-20 | 98 |
skeletal element | 4.03e-20 | 90 |
hemolymphoid system | 1.07e-17 | 108 |
immune system | 3.25e-17 | 93 |
skeletal system | 1.13e-16 | 100 |
lateral plate mesoderm | 1.42e-08 | 203 |