FFCP PHASE1:Hg19::chr16:2837553..2837568,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:2837553..2837568,- | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_at_chr16:2837553..2837568,- | |description=CAGE_peak_at_chr16:2837553..2837568,- | ||
|id=chr16:2837553..2837568,- | |id=chr16:2837553..2837568,- | ||
|ontology_enrichment_celltype=CL:0002586!1.21e-09!3;CL:0000775!2.33e-09!3;CL:0002322!5.34e-08!5;CL:0000149!2.69e-07!4 | |ontology_enrichment_celltype=CL:0002586!1.21e-09!3;CL:0000775!2.33e-09!3;CL:0002322!5.34e-08!5;CL:0000149!2.69e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002586;1.29e-26;3!CL:0000149;4.00e-20;4!CL:0000775;1.62e-12;3!CL:0000094;3.62e-10;8!CL:0000081;1.60e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.35e-26,3;CL:0000149,4.13e-20,4;CL:0000775,1.62e-12,3;CL:0000094,3.62e-10,8;CL:0000081,1.60e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0006242;2.17e-09;1!UBERON:0004161;3.89e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5662;2.17e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,2.67e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!4.63e-11!15;UBERON:0000179!4.63e-11!15;UBERON:0000463!4.63e-11!15;UBERON:0000966!9.22e-10!5;UBERON:0005388!9.22e-10!5;UBERON:0001802!9.22e-10!5;UBERON:0001781!1.21e-09!3;UBERON:0001782!1.21e-09!3;UBERON:0005424!1.21e-09!3;UBERON:0007023!2.85e-07!115;UBERON:0005743!3.79e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.02e-34;15!UBERON:0000179;1.02e-34;15!UBERON:0000463;1.02e-34;15!UBERON:0000966;8.18e-28;5!UBERON:0005388;8.18e-28;5!UBERON:0001802;8.18e-28;5!UBERON:0001781;1.29e-26;3!UBERON:0001782;1.29e-26;3!UBERON:0002390;6.25e-15;32!UBERON:0002193;1.17e-08;42!UBERON:0007625;1.21e-07;11!UBERON:0000019;1.89e-07;19!UBERON:0000047;1.89e-07;19!UBERON:0004088;1.89e-07;19!UBERON:0010230;1.89e-07;19!UBERON:0000970;4.42e-07;20!UBERON:0002104;9.51e-07;21!UBERON:0001456;9.51e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.52e-35,15;UBERON:0000179,9.52e-35,15;UBERON:0000463,9.52e-35,15;UBERON:0001782,1.35e-26,3;UBERON:0005424,1.35e-26,3;UBERON:0000966,3.24e-23,6;UBERON:0005388,3.24e-23,6;UBERON:0001802,3.24e-23,6;UBERON:0001781,4.13e-20,4;UBERON:0007625,1.22e-07,11;UBERON:0000019,4.45e-07,20;UBERON:0000047,4.45e-07,20;UBERON:0010312,4.45e-07,20;UBERON:0004088,4.45e-07,20;UBERON:0010230,4.45e-07,20;UBERON:0003072,4.45e-07,20;UBERON:0004128,4.45e-07,20;UBERON:0003071,4.45e-07,20;UBERON:0000970,9.58e-07,21;UBERON:0002104,9.58e-07,21 | |||
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| ||
|short_description=p@chr16:2837553..2837568,- | |short_description=p@chr16:2837553..2837568,- | ||
}} | }} |
Latest revision as of 07:38, 25 July 2015
Short description: | p@chr16:2837553..2837568, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:2837553..2837568, - |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.35e-26 | 3 |
visual pigment cell | 4.13e-20 | 4 |
neutrophil | 1.62e-12 | 3 |
granulocyte | 3.62e-10 | 8 |
blood cell | 1.60e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 9.52e-35 | 15 |
haemolymphatic fluid | 9.52e-35 | 15 |
organism substance | 9.52e-35 | 15 |
pigmented layer of retina | 1.35e-26 | 3 |
presumptive retinal pigmented epithelium | 1.35e-26 | 3 |
retina | 3.24e-23 | 6 |
photoreceptor array | 3.24e-23 | 6 |
posterior segment of eyeball | 3.24e-23 | 6 |
layer of retina | 4.13e-20 | 4 |
pigment epithelium of eye | 1.22e-07 | 11 |
camera-type eye | 4.45e-07 | 20 |
simple eye | 4.45e-07 | 20 |
immature eye | 4.45e-07 | 20 |
ocular region | 4.45e-07 | 20 |
eyeball of camera-type eye | 4.45e-07 | 20 |
optic cup | 4.45e-07 | 20 |
optic vesicle | 4.45e-07 | 20 |
eye primordium | 4.45e-07 | 20 |
eye | 9.58e-07 | 21 |
visual system | 9.58e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 2.67e-09 | 1 |