FFCP PHASE1:Hg19::chr17:27438880..27438901,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:27438880..27438901,- | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_at_chr17:27438880..27438901,- | |description=CAGE_peak_at_chr17:27438880..27438901,- | ||
|id=chr17:27438880..27438901,- | |id=chr17:27438880..27438901,- | ||
|ontology_enrichment_celltype=CL:0000128!7.97e-17!7;CL:0000126!7.97e-17!7;CL:0000127!7.97e-17!7;CL:0002453!7.97e-17!7;CL:0002319!8.17e-11!25;CL:0000243!2.25e-10!15;CL:0000125!2.25e-10!15;CL:0000030!2.25e-10!15;CL:0000339!2.25e-10!15;CL:0000095!4.49e-09!17;CL:0000123!4.49e-09!17;CL:0000133!1.97e-08!59;CL:0002603!3.16e-08!3;CL:0002605!4.01e-08!3;CL:0000221!3.02e-07!71 | |ontology_enrichment_celltype=CL:0000128!7.97e-17!7;CL:0000126!7.97e-17!7;CL:0000127!7.97e-17!7;CL:0002453!7.97e-17!7;CL:0002319!8.17e-11!25;CL:0000243!2.25e-10!15;CL:0000125!2.25e-10!15;CL:0000030!2.25e-10!15;CL:0000339!2.25e-10!15;CL:0000095!4.49e-09!17;CL:0000123!4.49e-09!17;CL:0000133!1.97e-08!59;CL:0002603!3.16e-08!3;CL:0002605!4.01e-08!3;CL:0000221!3.02e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002319;2.21e-15;25!CL:0000333;2.58e-14;5!CL:0000128;2.24e-10;7!CL:0000126;2.24e-10;7!CL:0000127;2.24e-10;7!CL:0000047;1.44e-09;2!CL:0000243;1.98e-09;15!CL:0000125;1.98e-09;15!CL:0000095;1.70e-08;17!CL:0002605;8.62e-07;3!CL:0002603;8.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.27e-15,25;CL:0000133,6.38e-13,59;CL:0000221,1.39e-10,72;CL:0000128,2.24e-10,7;CL:0000126,2.24e-10,7;CL:0000127,2.24e-10,7;CL:0002453,2.24e-10,7;CL:0000333,1.01e-09,41;CL:0000243,1.98e-09,15;CL:0000125,1.98e-09,15;CL:0000030,1.98e-09,15;CL:0000339,1.98e-09,15;CL:0000047,3.55e-09,8;CL:0000095,1.70e-08,17;CL:0000123,1.70e-08,17;CL:0002603,6.88e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000339;1.98e-09;15!CL:0000133;1.11e-07;59!UBERON:0006238;4.43e-07;10 | |||
|ontology_enrichment_disease=DOID:171!4.75e-11!10;DOID:3095!1.38e-08!22;DOID:2994!1.38e-08!22 | |ontology_enrichment_disease=DOID:171!4.75e-11!10;DOID:3095!1.38e-08!22;DOID:2994!1.38e-08!22 | ||
|ontology_enrichment_disease_v019=DOID:5409;2.02e-17;4!DOID:171;1.42e-15;10!DOID:169;4.30e-12;6!DOID:1325;2.24e-10;7!DOID:3904;2.24e-10;7!DOID:3905;2.85e-08;9!DOID:3095;2.12e-07;22!DOID:2994;2.12e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.19e-17,4;DOID:171,1.50e-15,10;DOID:169,4.55e-12,6;DOID:1325,2.35e-10,7;DOID:3904,2.35e-10,7;DOID:3905,2.96e-08,9;DOID:3095,2.16e-07,22;DOID:2994,2.16e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.36e-12!94;UBERON:0001016!1.36e-12!94;UBERON:0001017!6.21e-12!82;UBERON:0005743!4.45e-11!86;UBERON:0000955!3.38e-10!69;UBERON:0006238!3.38e-10!69;UBERON:0002346!3.00e-09!90;UBERON:0000924!2.00e-08!173;UBERON:0006601!2.00e-08!173;UBERON:0002616!6.68e-08!59;UBERON:0006947!1.02e-07!3;UBERON:0004054!1.02e-07!3;UBERON:0001049!2.59e-07!57;UBERON:0005068!2.59e-07!57;UBERON:0006241!2.59e-07!57;UBERON:0007135!2.59e-07!57 | |ontology_enrichment_uberon=UBERON:0000073!1.36e-12!94;UBERON:0001016!1.36e-12!94;UBERON:0001017!6.21e-12!82;UBERON:0005743!4.45e-11!86;UBERON:0000955!3.38e-10!69;UBERON:0006238!3.38e-10!69;UBERON:0002346!3.00e-09!90;UBERON:0000924!2.00e-08!173;UBERON:0006601!2.00e-08!173;UBERON:0002616!6.68e-08!59;UBERON:0006947!1.02e-07!3;UBERON:0004054!1.02e-07!3;UBERON:0001049!2.59e-07!57;UBERON:0005068!2.59e-07!57;UBERON:0006241!2.59e-07!57;UBERON:0007135!2.59e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.58e-14;5!UBERON:0002410;2.58e-14;5!UBERON:0000010;2.29e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.76e-14,5;UBERON:0002410,2.76e-14,5;UBERON:0001016,5.51e-11,89;UBERON:0000010,2.37e-08,8;UBERON:0001017,5.44e-07,81;UBERON:0004121,5.50e-07,171;UBERON:0000924,5.50e-07,171;UBERON:0006601,5.50e-07,171 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60057375499824,0.612002073732759,0.313454721478088,1.14494394852423,0.273748850145768,0.627713197974014,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567208902984407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,1.17261385734044,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0.356128142586949,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.144269212976445,0,0,0,0,0,0,0,0.912938716132769,0.313359791546046,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613612095012929,0,0,0,0,0,0,0,0,0,0,5.98841394003583,0,0,0,0,0,0,0,0.291604613383254,0,0,0.361789315876224,0,0,0,0,0,0,0.0769502585037971,0,0.23056390438806,0,0,0,0,0,0,0.627921025580099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.394584402849391,0,0.91821828489147,0.063186579628488,0,0,0,0,0.313932918407225,0,0,0,0.347119476670262,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0.686379991447858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.0620964029413835,16.8785334622202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0,0,0,0,0,0.139879507719444,0,1.27894371303652,0.107824811396682,6.91970144165944,0,0.169732529954025,0.212574920101683,0.619678821295011,0,0,0.0788617450012534,0,0,0,0.256916900385838,0,0,0,0.756215088665154,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,1.56302802246618,0,0.163771917510097,0,0,0,0,0.126831620387814,0,0,0,1.40696995487696,0,0,0,0,0,0,0,0,0,0,0,0,0,0.942693539496011,0,0,0,0,0,0.632054446930906,0,0.347716544605159,0,0,0,0,0,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,1.42922671769058,1.20770274853339,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr17:27438880..27438901,- | |short_description=p@chr17:27438880..27438901,- | ||
}} | }} |
Latest revision as of 15:08, 25 July 2015
Short description: | p@chr17:27438880..27438901, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:27438880..27438901, - |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.27e-15 | 25 |
neurectodermal cell | 6.38e-13 | 59 |
ectodermal cell | 1.39e-10 | 72 |
oligodendrocyte | 2.24e-10 | 7 |
macroglial cell | 2.24e-10 | 7 |
astrocyte | 2.24e-10 | 7 |
oligodendrocyte precursor cell | 2.24e-10 | 7 |
migratory neural crest cell | 1.01e-09 | 41 |
glial cell (sensu Vertebrata) | 1.98e-09 | 15 |
glial cell | 1.98e-09 | 15 |
glioblast | 1.98e-09 | 15 |
glioblast (sensu Vertebrata) | 1.98e-09 | 15 |
neuronal stem cell | 3.55e-09 | 8 |
neuron associated cell | 1.70e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 1.70e-08 | 17 |
astrocyte of the cerebellum | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.76e-14 | 5 |
autonomic nervous system | 2.76e-14 | 5 |
nervous system | 5.51e-11 | 89 |
peripheral nervous system | 2.37e-08 | 8 |
central nervous system | 5.44e-07 | 81 |
ectoderm-derived structure | 5.50e-07 | 171 |
ectoderm | 5.50e-07 | 171 |
presumptive ectoderm | 5.50e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.19e-17 | 4 |
neuroectodermal tumor | 1.50e-15 | 10 |
neuroendocrine tumor | 4.55e-12 | 6 |
bronchus cancer | 2.35e-10 | 7 |
bronchogenic carcinoma | 2.35e-10 | 7 |
lung carcinoma | 2.96e-08 | 9 |
germ cell and embryonal cancer | 2.16e-07 | 22 |
germ cell cancer | 2.16e-07 | 22 |