FFCP PHASE1:Hg19::chr17:28898830..28898835,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-267bp_to_ENST00000420566_5end | |association_with_transcript=-267bp_to_ENST00000420566_5end | ||
|cluster_id=chr17:28898830..28898835,- | |||
|coexpression_cluster_id=C3310 | |||
|description=CAGE_peak_1_at_ENST00000420566_5end | |description=CAGE_peak_1_at_ENST00000420566_5end | ||
|id=chr17:28898830..28898835,- | |id=chr17:28898830..28898835,- | ||
|ontology_enrichment_celltype=CL:0000066!4.27e-29!254;CL:0002076!4.55e-24!43;CL:0000223!2.63e-17!59;CL:0002368!6.50e-14!13;CL:0002251!3.53e-12!21;CL:0002159!9.46e-12!13;CL:0002202!2.32e-08!9;CL:0002632!2.32e-08!9;CL:0000622!3.03e-08!5;CL:0000063!9.19e-08!578;CL:0002077!1.59e-07!33;CL:0000076!4.22e-07!62;CL:0000244!5.32e-07!4;CL:0000731!5.32e-07!4;CL:0000154!9.38e-07!6 | |ontology_enrichment_celltype=CL:0000066!4.27e-29!254;CL:0002076!4.55e-24!43;CL:0000223!2.63e-17!59;CL:0002368!6.50e-14!13;CL:0002251!3.53e-12!21;CL:0002159!9.46e-12!13;CL:0002202!2.32e-08!9;CL:0002632!2.32e-08!9;CL:0000622!3.03e-08!5;CL:0000063!9.19e-08!578;CL:0002077!1.59e-07!33;CL:0000076!4.22e-07!62;CL:0000244!5.32e-07!4;CL:0000731!5.32e-07!4;CL:0000154!9.38e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002368;2.48e-21;13!CL:0002076;5.82e-19;42!CL:0002159;1.16e-16;14!CL:0002202;1.28e-12;9!CL:0002632;1.28e-12;9!CL:0000622;5.32e-12;5!CL:0000244;4.93e-10;4!CL:0000731;4.93e-10;4!CL:0000154;6.23e-10;6!CL:0002251;8.64e-10;20!CL:0000307;2.20e-08;3!CL:0002077;2.41e-08;34!CL:0002328;3.38e-08;3!CL:0002166;7.83e-08;3!CL:0002621;9.35e-08;3!CL:0002623;1.41e-07;3!CL:0000240;2.34e-07;6!CL:0000311;2.34e-07;6!CL:0000079;2.34e-07;6!CL:0000237;2.34e-07;6!CL:0000362;3.23e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.23e-24,42;CL:0000066,6.21e-24,253;CL:0002368,2.24e-21,13;CL:0002159,1.03e-16,14;CL:0000223,4.84e-16,58;CL:0002202,1.20e-12,9;CL:0002632,1.20e-12,9;CL:0000622,5.32e-12,5;CL:0000244,4.59e-10,4;CL:0000731,4.59e-10,4;CL:0000154,6.23e-10,6;CL:0002077,7.36e-10,34;CL:0002251,9.51e-10,20;CL:0000068,2.17e-08,3;CL:0000069,2.17e-08,3;CL:0000307,2.17e-08,3;CL:0000377,2.17e-08,3;CL:0002328,3.30e-08,3;CL:0002166,6.48e-08,3;CL:0002621,9.69e-08,3;CL:0002623,1.41e-07,3;CL:0000240,2.38e-07,6;CL:0000311,2.38e-07,6;CL:0000079,2.38e-07,6;CL:0000237,2.38e-07,6;CL:0000036,2.38e-07,6;CL:0000357,2.38e-07,6;CL:0000114,2.38e-07,6;CL:0000362,3.23e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;6.51e-09;58!CL:0000377;2.20e-08;3!CL:0000357;2.34e-07;6!CL:0000114;2.34e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!7.72e-14!14;DOID:305!1.44e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.53e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.53e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.19e-21!72;UBERON:0004119!8.28e-19!169;UBERON:0000925!8.28e-19!169;UBERON:0006595!8.28e-19!169;UBERON:0000065!1.41e-15!53;UBERON:0001557!4.12e-15!19;UBERON:0001737!9.46e-14!9;UBERON:0000072!6.21e-13!46;UBERON:0000161!8.91e-13!35;UBERON:0000166!3.95e-12!21;UBERON:0001007!4.60e-12!155;UBERON:0001555!4.60e-12!155;UBERON:0007026!4.60e-12!155;UBERON:0000077!8.60e-12!130;UBERON:0001041!1.28e-09!98;UBERON:0004921!1.46e-09!129;UBERON:0004185!1.46e-09!129;UBERON:0000165!1.75e-09!28;UBERON:0000930!1.75e-09!28;UBERON:0008947!5.38e-09!38;UBERON:0003258!5.38e-09!38;UBERON:0005631!1.20e-08!14;UBERON:0000158!1.20e-08!14;UBERON:0000365!1.57e-08!5;UBERON:0000344!3.76e-08!12;UBERON:0000062!3.99e-08!511;UBERON:0000064!1.66e-07!219;UBERON:0000974!1.81e-07!10;UBERON:0003102!2.92e-07!95;UBERON:0005910!5.51e-07!6;UBERON:0003729!6.43e-07!5;UBERON:0001444!6.99e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.34e-20;9!UBERON:0001557;1.34e-20;9!UBERON:0000065;1.06e-15;44!UBERON:0000072;5.01e-13;37!UBERON:0001004;1.22e-12;65!UBERON:0000365;2.06e-12;5!UBERON:0000486;8.40e-12;12!UBERON:0005910;2.86e-10;6!UBERON:0000161;4.08e-10;19!UBERON:0000166;4.08e-10;19!UBERON:0000165;3.77e-09;28!UBERON:0004815;3.38e-08;3!UBERON:0002031;3.38e-08;3!UBERON:0001949;9.35e-08;3!UBERON:0007196;4.16e-07;15!UBERON:0001558;4.16e-07;15!UBERON:0005911;8.95e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.35e-26,74;UBERON:0001737,1.34e-20,9;UBERON:0000065,1.39e-19,54;UBERON:0004119,2.87e-18,160;UBERON:0000925,2.87e-18,160;UBERON:0006595,2.87e-18,160;UBERON:0001557,1.00e-15,19;UBERON:0000072,2.81e-15,47;UBERON:0008947,3.76e-14,38;UBERON:0003258,3.76e-14,38;UBERON:0000365,1.92e-12,5;UBERON:0001041,1.68e-11,87;UBERON:0001007,1.40e-10,145;UBERON:0001555,1.40e-10,145;UBERON:0007026,1.40e-10,145;UBERON:0005910,2.70e-10,6;UBERON:0000166,3.26e-10,22;UBERON:0003102,1.53e-09,99;UBERON:0000161,1.82e-09,36;UBERON:0004921,3.33e-09,118;UBERON:0000165,1.02e-08,29;UBERON:0000930,1.02e-08,29;UBERON:0004815,3.30e-08,3;UBERON:0002031,3.30e-08,3;UBERON:0000033,7.08e-08,56;UBERON:0000153,9.22e-08,62;UBERON:0007811,9.22e-08,62;UBERON:0001949,9.69e-08,3;UBERON:0007196,4.02e-07,15;UBERON:0001558,4.02e-07,15;UBERON:0005631,6.26e-07,14;UBERON:0000158,6.26e-07,14 | |||
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| ||
|short_description=p1@ENST00000420566 | |short_description=p1@ENST00000420566 | ||
}} | }} |
Latest revision as of 15:16, 25 July 2015
Short description: | p1@ENST00000420566 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000420566_5end |
Coexpression cluster: | C3310_Keratinocyte_Bronchial_Corneal_Small_Tracheal_Mammary_Prostate |
Association with transcript: | -267bp_to_ENST00000420566_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory system | 3.35e-26 | 74 |
larynx | 1.34e-20 | 9 |
respiratory tract | 1.39e-19 | 54 |
endoderm-derived structure | 2.87e-18 | 160 |
endoderm | 2.87e-18 | 160 |
presumptive endoderm | 2.87e-18 | 160 |
upper respiratory tract | 1.00e-15 | 19 |
segment of respiratory tract | 2.81e-15 | 47 |
respiratory primordium | 3.76e-14 | 38 |
endoderm of foregut | 3.76e-14 | 38 |
urothelium | 1.92e-12 | 5 |
foregut | 1.68e-11 | 87 |
digestive system | 1.40e-10 | 145 |
digestive tract | 1.40e-10 | 145 |
primitive gut | 1.40e-10 | 145 |
transitional epithelium | 2.70e-10 | 6 |
oral opening | 3.26e-10 | 22 |
surface structure | 1.53e-09 | 99 |
orifice | 1.82e-09 | 36 |
subdivision of digestive tract | 3.33e-09 | 118 |
mouth | 1.02e-08 | 29 |
stomodeum | 1.02e-08 | 29 |
lower respiratory tract epithelium | 3.30e-08 | 3 |
epithelium of bronchus | 3.30e-08 | 3 |
head | 7.08e-08 | 56 |
anterior region of body | 9.22e-08 | 62 |
craniocervical region | 9.22e-08 | 62 |
gingival epithelium | 9.69e-08 | 3 |
tracheobronchial tree | 4.02e-07 | 15 |
lower respiratory tract | 4.02e-07 | 15 |
extraembryonic membrane | 6.26e-07 | 14 |
membranous layer | 6.26e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.53e-07 | 14 |