FFCP PHASE1:Hg19::chr19:4172177..4172192,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:4172177..4172192,+ to FFCP PHASE1:Hg19::chr19:4172177..4172192,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:4172177..4172192,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_at_chr19:4172177..4172192,+ | |||
|id=chr19:4172177..4172192,+ | |||
|ontology_enrichment_celltype=CL:0000181!3.44e-12!12;CL:0000417!3.44e-12!12;CL:0000668!3.44e-12!12;CL:0000414!3.44e-12!12;CL:0000412!3.44e-12!12;CL:0000182!3.44e-12!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.00e-14;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.00e-14,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!2.62e-14!20;UBERON:0002619!7.42e-13!22;UBERON:0001869!1.39e-11!32;UBERON:0002791!3.71e-11!33;UBERON:0000956!4.22e-11!25;UBERON:0000203!4.22e-11!25;UBERON:0002020!9.35e-11!34;UBERON:0003528!9.35e-11!34;UBERON:0001893!9.35e-11!34;UBERON:0005057!4.56e-10!26;UBERON:0002107!1.61e-09!19;UBERON:0006925!1.61e-09!19;UBERON:0008836!1.61e-09!19;UBERON:0002771!5.26e-09!3;UBERON:0001871!9.09e-09!7;UBERON:0001049!1.49e-08!57;UBERON:0005068!1.49e-08!57;UBERON:0006241!1.49e-08!57;UBERON:0007135!1.49e-08!57;UBERON:0002780!1.72e-08!41;UBERON:0001890!1.72e-08!41;UBERON:0006240!1.72e-08!41;UBERON:0002368!2.31e-08!35;UBERON:0003080!3.14e-08!42;UBERON:0008835!5.12e-08!22;UBERON:0003894!5.12e-08!22;UBERON:0000200!6.25e-08!6;UBERON:0009854!1.32e-07!23;UBERON:0000160!1.72e-07!27;UBERON:0000949!2.90e-07!45;UBERON:0002616!4.76e-07!59;UBERON:0007499!7.04e-07!25;UBERON:0009497!7.04e-07!25;UBERON:0000015!7.04e-07!25;UBERON:0002423!7.04e-07!25;UBERON:0006235!7.04e-07!25;UBERON:0004161!7.04e-07!25;UBERON:0005409!9.57e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;5.98e-33;4!UBERON:0000160;6.33e-25;17!UBERON:0005409;1.48e-19;22!UBERON:0002107;8.80e-16;19!UBERON:0006925;8.80e-16;19!UBERON:0002423;4.40e-12;25!UBERON:0004921;5.85e-12;33!UBERON:0002365;4.01e-10;31!UBERON:0002330;4.01e-10;31!UBERON:0001007;8.04e-10;81!UBERON:0001155;7.16e-09;9!UBERON:0002368;3.12e-08;33!UBERON:0000059;2.03e-07;11!UBERON:0002114;2.79e-07;2!UBERON:0000949;5.67e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,5.98e-33,4;UBERON:0000160,6.33e-25,17;UBERON:0005409,2.55e-17,25;UBERON:0002107,8.80e-16,19;UBERON:0006925,8.80e-16,19;UBERON:0008836,8.80e-16,19;UBERON:0008835,1.11e-13,22;UBERON:0003894,1.11e-13,22;UBERON:0009854,4.20e-13,23;UBERON:0007499,4.40e-12,25;UBERON:0009497,4.40e-12,25;UBERON:0000015,4.40e-12,25;UBERON:0002423,4.40e-12,25;UBERON:0006235,4.40e-12,25;UBERON:0004161,4.40e-12,25;UBERON:0004921,9.45e-12,118;UBERON:0009856,1.25e-11,26;UBERON:0002365,8.32e-10,31;UBERON:0002330,8.32e-10,31;UBERON:0001007,1.85e-09,145;UBERON:0001555,1.85e-09,145;UBERON:0007026,1.85e-09,145;UBERON:0001155,7.16e-09,9;UBERON:0002368,1.02e-08,35;UBERON:0004119,1.62e-08,160;UBERON:0000925,1.62e-08,160;UBERON:0006595,1.62e-08,160;UBERON:0000059,2.03e-07,11;UBERON:0011216,2.76e-07,223;UBERON:0002114,2.79e-07,2;UBERON:0000949,7.76e-07,45 | |||
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| ||
|short_description=p@chr19:4172177..4172192,+ | |||
}} | }} |
Latest revision as of 08:02, 26 July 2015
Short description: | p@chr19:4172177..4172192, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:4172177..4172192, + |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.00e-14 | 12 |
Ontology term | p-value | n |
---|---|---|
small intestine | 5.98e-33 | 4 |
intestine | 6.33e-25 | 17 |
gastrointestinal system | 2.55e-17 | 25 |
liver | 8.80e-16 | 19 |
digestive gland | 8.80e-16 | 19 |
liver bud | 8.80e-16 | 19 |
hepatic diverticulum | 1.11e-13 | 22 |
liver primordium | 1.11e-13 | 22 |
digestive tract diverticulum | 4.20e-13 | 23 |
epithelial sac | 4.40e-12 | 25 |
epithelium of foregut-midgut junction | 4.40e-12 | 25 |
anatomical boundary | 4.40e-12 | 25 |
hepatobiliary system | 4.40e-12 | 25 |
foregut-midgut junction | 4.40e-12 | 25 |
septum transversum | 4.40e-12 | 25 |
subdivision of digestive tract | 9.45e-12 | 118 |
sac | 1.25e-11 | 26 |
exocrine gland | 8.32e-10 | 31 |
exocrine system | 8.32e-10 | 31 |
digestive system | 1.85e-09 | 145 |
digestive tract | 1.85e-09 | 145 |
primitive gut | 1.85e-09 | 145 |
colon | 7.16e-09 | 9 |
endocrine gland | 1.02e-08 | 35 |
endoderm-derived structure | 1.62e-08 | 160 |
endoderm | 1.62e-08 | 160 |
presumptive endoderm | 1.62e-08 | 160 |
large intestine | 2.03e-07 | 11 |
organ system subdivision | 2.76e-07 | 223 |
duodenum | 2.79e-07 | 2 |
endocrine system | 7.76e-07 | 45 |