FFCP PHASE1:Hg19::chr1:156052656..156052690,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:156052656..156052690,+ | |||
|description=CAGE_peak_at_chr1:156052656..156052690,+ | |description=CAGE_peak_at_chr1:156052656..156052690,+ | ||
|id=chr1:156052656..156052690,+ | |id=chr1:156052656..156052690,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.05e-16!25;CL:0000133!2.33e-13!59;CL:0002321!1.78e-12!248;CL:0000220!6.61e-12!246;CL:0000095!2.47e-11!17;CL:0000123!2.47e-11!17;CL:0000243!1.11e-09!15;CL:0000125!1.11e-09!15;CL:0000030!1.11e-09!15;CL:0000339!1.11e-09!15;CL:0000221!4.43e-09!71;CL:0000333!1.22e-08!41;CL:0002139!1.38e-07!24;CL:0000055!5.41e-07!180;CL:0000047!5.73e-07!8;CL:0002078!7.72e-07!44 | |ontology_enrichment_celltype=CL:0002319!1.05e-16!25;CL:0000133!2.33e-13!59;CL:0002321!1.78e-12!248;CL:0000220!6.61e-12!246;CL:0000095!2.47e-11!17;CL:0000123!2.47e-11!17;CL:0000243!1.11e-09!15;CL:0000125!1.11e-09!15;CL:0000030!1.11e-09!15;CL:0000339!1.11e-09!15;CL:0000221!4.43e-09!71;CL:0000333!1.22e-08!41;CL:0002139!1.38e-07!24;CL:0000055!5.41e-07!180;CL:0000047!5.73e-07!8;CL:0002078!7.72e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0002319;2.87e-27;25!CL:0000128;2.94e-16;7!CL:0000126;2.94e-16;7!CL:0000127;2.94e-16;7!CL:0000095;4.12e-16;17!CL:0000243;3.27e-12;15!CL:0000125;3.27e-12;15!CL:0000540;1.36e-09;6!CL:0000404;1.36e-09;6!CL:0002605;2.59e-08;3!CL:0000064;4.21e-08;3!CL:0000067;4.21e-08;3!CL:0005012;4.21e-08;3!CL:0002304;4.21e-08;3!CL:0002603;9.26e-08;3 | |ontology_enrichment_celltype_v019=CL:0002319;2.87e-27;25!CL:0000128;2.94e-16;7!CL:0000126;2.94e-16;7!CL:0000127;2.94e-16;7!CL:0000095;4.12e-16;17!CL:0000243;3.27e-12;15!CL:0000125;3.27e-12;15!CL:0000540;1.36e-09;6!CL:0000404;1.36e-09;6!CL:0002605;2.59e-08;3!CL:0000064;4.21e-08;3!CL:0000067;4.21e-08;3!CL:0005012;4.21e-08;3!CL:0002304;4.21e-08;3!CL:0002603;9.26e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.17e-27,25;CL:0000133,1.99e-23,59;CL:0000221,6.41e-18,72;CL:0000095,1.00e-15,17;CL:0000123,1.00e-15,17;CL:0000128,1.15e-15,7;CL:0000126,1.15e-15,7;CL:0000127,1.15e-15,7;CL:0002453,1.15e-15,7;CL:0000333,8.54e-14,41;CL:0000047,2.10e-13,8;CL:0000243,7.29e-12,15;CL:0000125,7.29e-12,15;CL:0000030,7.29e-12,15;CL:0000339,7.29e-12,15;CL:0000540,1.03e-09,6;CL:0000031,1.03e-09,6;CL:0000404,1.03e-09,6;CL:0000064,2.78e-08,3;CL:0000067,2.78e-08,3;CL:0005012,2.78e-08,3;CL:0002304,2.78e-08,3;CL:0002605,3.14e-08,3;CL:0002603,1.99e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000133;1.86e-12;59!CL:0000339;3.27e-12;15!CL:0000031;1.36e-09;6!CL:0000221;5.94e-08;72 | |ontology_enrichment_development_v019=CL:0000133;1.86e-12;59!CL:0000339;3.27e-12;15!CL:0000031;1.36e-09;6!CL:0000221;5.94e-08;72 | ||
|ontology_enrichment_disease=DOID:3095!1.55e-07!22;DOID:2994!1.55e-07!22 | |ontology_enrichment_disease=DOID:3095!1.55e-07!22;DOID:2994!1.55e-07!22 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.96e-12!94;UBERON:0001016!3.96e-12!94;UBERON:0000924!1.12e-10!173;UBERON:0006601!1.12e-10!173;UBERON:0004121!5.49e-10!169;UBERON:0005743!3.14e-09!86;UBERON:0002049!4.73e-09!79;UBERON:0007798!4.73e-09!79;UBERON:0000468!1.92e-08!659;UBERON:0000483!3.00e-08!309;UBERON:0002104!4.27e-08!21;UBERON:0001017!4.49e-08!82;UBERON:0000119!4.69e-08!312;UBERON:0000970!1.69e-07!20;UBERON:0001456!6.28e-07!21;UBERON:0000019!6.49e-07!19;UBERON:0000047!6.49e-07!19;UBERON:0004088!6.49e-07!19;UBERON:0003072!6.49e-07!19;UBERON:0003071!6.49e-07!19;UBERON:0004128!6.49e-07!19;UBERON:0001032!7.26e-07!24;UBERON:0004456!7.26e-07!24;UBERON:0000922!7.58e-07!612 | |ontology_enrichment_uberon=UBERON:0000073!3.96e-12!94;UBERON:0001016!3.96e-12!94;UBERON:0000924!1.12e-10!173;UBERON:0006601!1.12e-10!173;UBERON:0004121!5.49e-10!169;UBERON:0005743!3.14e-09!86;UBERON:0002049!4.73e-09!79;UBERON:0007798!4.73e-09!79;UBERON:0000468!1.92e-08!659;UBERON:0000483!3.00e-08!309;UBERON:0002104!4.27e-08!21;UBERON:0001017!4.49e-08!82;UBERON:0000119!4.69e-08!312;UBERON:0000970!1.69e-07!20;UBERON:0001456!6.28e-07!21;UBERON:0000019!6.49e-07!19;UBERON:0000047!6.49e-07!19;UBERON:0004088!6.49e-07!19;UBERON:0003072!6.49e-07!19;UBERON:0003071!6.49e-07!19;UBERON:0004128!6.49e-07!19;UBERON:0001032!7.26e-07!24;UBERON:0004456!7.26e-07!24;UBERON:0000922!7.58e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0002104;7.64e-12;21!UBERON:0000970;2.00e-10;20!UBERON:0001032;4.78e-10;24!UBERON:0004456;4.78e-10;24!UBERON:0001456;5.66e-10;21!UBERON:0000019;4.66e-09;19!UBERON:0000047;4.66e-09;19!UBERON:0004088;4.66e-09;19!UBERON:0010230;4.66e-09;19!UBERON:0000020;8.81e-09;23!UBERON:0001778;4.21e-08;3!UBERON:0001775;4.21e-08;3!UBERON:0001801;9.02e-08;14!UBERON:0007625;1.50e-07;11!UBERON:0002203;7.48e-07;6!UBERON:0001768;7.48e-07;6!UBERON:0002200;7.48e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002104;7.64e-12;21!UBERON:0000970;2.00e-10;20!UBERON:0001032;4.78e-10;24!UBERON:0004456;4.78e-10;24!UBERON:0001456;5.66e-10;21!UBERON:0000019;4.66e-09;19!UBERON:0000047;4.66e-09;19!UBERON:0004088;4.66e-09;19!UBERON:0010230;4.66e-09;19!UBERON:0000020;8.81e-09;23!UBERON:0001778;4.21e-08;3!UBERON:0001775;4.21e-08;3!UBERON:0001801;9.02e-08;14!UBERON:0007625;1.50e-07;11!UBERON:0002203;7.48e-07;6!UBERON:0001768;7.48e-07;6!UBERON:0002200;7.48e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,5.85e-12,21;UBERON:0002104,5.85e-12,21;UBERON:0001456,1.82e-11,22;UBERON:0000019,1.49e-10,20;UBERON:0000047,1.49e-10,20;UBERON:0010312,1.49e-10,20;UBERON:0004088,1.49e-10,20;UBERON:0010230,1.49e-10,20;UBERON:0003072,1.49e-10,20;UBERON:0004128,1.49e-10,20;UBERON:0003071,1.49e-10,20;UBERON:0000020,3.81e-10,24;UBERON:0001032,3.81e-10,24;UBERON:0004456,3.81e-10,24;UBERON:0001016,2.04e-09,89;UBERON:0004121,3.54e-09,171;UBERON:0000924,3.54e-09,171;UBERON:0006601,3.54e-09,171;UBERON:0001778,2.78e-08,3;UBERON:0001775,2.78e-08,3;UBERON:0001017,4.81e-08,81;UBERON:0001801,6.95e-08,14;UBERON:0007625,1.17e-07,11;UBERON:0002346,4.17e-07,86;UBERON:0002203,5.97e-07,6;UBERON:0001768,5.97e-07,6;UBERON:0002200,5.97e-07,6;UBERON:0003075,9.32e-07,82;UBERON:0007284,9.32e-07,82 | |||
|phase1_expression=0,0.214100523890983,0,0,0.893922188854576,0,0,0,0,0.491467873003018,0.697801167972428,0.218441372130172,0,0.247532705920093,1.98838425436749,1.34465029290355,0.602694528023977,0.730310090387373,0.487932798790507,1.10808952269109,1.22400414746552,3.13454721478088,2.28988789704845,2.05311637609326,2.00868223351684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0.144846518960824,0.795285947051099,0.973269740605272,1.89069634328136,3.1042115644759,2.19586964232815,0.196468613246569,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,0.198762407366705,1.72046919021225,0.347140501607594,0.56530794192401,1.67799774483962,0.550236083880135,0.835979866147242,0.775250277507987,0,0.33472061276467,0.402829317109147,0,1.95249646038536,0,0.81014194788176,0.535798369704479,0.898117490504679,0.337834441449967,0,0.949265659568129,0.732806975721629,0,0,0,0,0.12663051166458,0.132409180813219,0.860509862246441,0,1.68203280042692,0,1.2333377420858,0,0.134710672069688,0.653847612453835,0.605429710579726,1.15235184896,0.70296429550139,0,0,0,0.23486899728753,0,0.140450806702248,0,0.368502951935304,0.103325781175765,0,0.494533858557114,0,0,0,0.500474079487857,0,0,0,0,0,0.358779271377724,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0,0.389748020644795,0.504867548488229,0.0920498986422993,0.323292113637624,0.355009592516614,0.10075209822764,0.339121184620975,0,0,0,0.609868530647977,0.662648841607426,1.74290914304278,3.93912009058408,2.01856680700503,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0.614942192715568,0.857839051492628,0,0,0,0.277765335475589,2.93227474779292,0,1.44331342025273,3.59384255422738,0.70445216541493,0.577465791044295,0.925971025153221,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.12624243342638,0,0,0,0,0,0.600686115687835,0,0.112131084345361,0,0,0.258543431515556,0,0,0,0,0.257207374262142,1.41849132023278,0,0.428933980974443,0.542621605391443,0,0,0,0,0,0,0.499864955910285,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0.128343036279748,1.52456774533478,1.30139853857622,1.54657762555539,1.50764638800914,4.46557126157214,0,0,0,0.613457458595699,0.500170521059677,1.08506009479894,0,0,0.157702415033935,0,0,0,0,0,0,0.347534457872331,1.17480694477644,1.37257369524342,0,0,0,0,0,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,1.57117284469109,0.802025881213139,0.184161977871793,0,0,0.131124414959424,0,0.539107359730903,0,1.46139224653261,0.633309773357254,0,0.170093705276516,0.647747748306418,0,0,2.00675909541941,0,0,0.895499018888713,0,0,0.512900250232778,0.328014645699706,2.27764876265012,0.103041011647722,1.19040304263846,1.56768049849117,0,0,0,2.12675580242668,0.154048617114644,0,0,0,0.435050081742686,0.340906509664404,0.801288320820636,0,0,0.127612712494584,0.10115778085555,0,1.25924938732256,0,0,0,0,0.37064843820784,0.286249773483982,0.744316738719335,0,0.190630193923825,0,0.42793898803392,0.318203247925937,0.78494864019923,0,0,0,0,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0.281695602532241,0,0.491245205065606,0.7133421029625,0,0.211107635297664,0,0.379473173765715,2.0996083214699,0,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,1.1750647824022,8.66231869737023,0,0,0.432807638929335,0,0,0,0,0,0.973865820823666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0.36408156524854,0,0,0.23874448473769,0.593929361665277,0.307160702099232,0,0,0,0,5.48926061132783,0,0,0,1.1249555075237,0.123084805461069,0,0,0,0.511572370226872,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,1.01701460117107,0,7.23961083807076,0.291604613383254,0.868124974666461,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0.219385397153973,0.32681539055697,0,0.153900517007594,0,0,0.179515288819544,0.325942115766024,0,0.183195186803725,0,0,0,0,0,0.19606253431774,0,0,0,0.210998064528027,0.163232808159148,0.141353071433941,1.08194319871046,0,0.0884575645033392,0,0,0,0,0.134802265961354,0.802577647298789,0.234264445725339,0,0,0,0,0,4.89716418608784,0.063186579628488,0.300646838828985,0,0,0,0,0,1.99226682220855,0,0.173559738335131,0,0,0,0,0,0.0730893170861856,0,0.0969890164884194,0.0882561266915003,1.35588444468319,0,0.19871461170299,0,0.195551382734803,0,0,0,0,0.343609788497747,0.514784993585894,0.14405479798815,0.124252535565433,0,0.951329442515298,0.732219924186332,0.305994652908965,1.44475294950759,0,0.273810757783986,0,1.71906176567983,0,0,0.458320848023367,0,0,0,0.223171457441873,0.335917362433631,0,5.82479747637269,0.315132729228895,0.0824158583811665,0.337017719270924,0.492137407573744,0,0.795229689809303,0,1.60753148465019,1.2378549293751,0.83088067605837,0,0,0.182248669974074,0.335434687599266,0,2.04572893726493,0.21120067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| ||
|short_description=p@chr1:156052656..156052690,+ | |short_description=p@chr1:156052656..156052690,+ | ||
}} | }} |
Latest revision as of 22:28, 27 July 2015
Short description: | p@chr1:156052656..156052690, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:156052656..156052690, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.17e-27 | 25 |
neurectodermal cell | 1.99e-23 | 59 |
ectodermal cell | 6.41e-18 | 72 |
neuron associated cell | 1.00e-15 | 17 |
neuron associated cell (sensu Vertebrata) | 1.00e-15 | 17 |
oligodendrocyte | 1.15e-15 | 7 |
macroglial cell | 1.15e-15 | 7 |
astrocyte | 1.15e-15 | 7 |
oligodendrocyte precursor cell | 1.15e-15 | 7 |
migratory neural crest cell | 8.54e-14 | 41 |
neuronal stem cell | 2.10e-13 | 8 |
glial cell (sensu Vertebrata) | 7.29e-12 | 15 |
glial cell | 7.29e-12 | 15 |
glioblast | 7.29e-12 | 15 |
glioblast (sensu Vertebrata) | 7.29e-12 | 15 |
neuron | 1.03e-09 | 6 |
neuroblast | 1.03e-09 | 6 |
electrically signaling cell | 1.03e-09 | 6 |
ciliated cell | 2.78e-08 | 3 |
ciliated epithelial cell | 2.78e-08 | 3 |
multi-ciliated epithelial cell | 2.78e-08 | 3 |
non-pigmented ciliary epithelial cell | 2.78e-08 | 3 |
astrocyte of the cerebral cortex | 3.14e-08 | 3 |
astrocyte of the cerebellum | 1.99e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
eye | 5.85e-12 | 21 |
visual system | 5.85e-12 | 21 |
face | 1.82e-11 | 22 |
camera-type eye | 1.49e-10 | 20 |
simple eye | 1.49e-10 | 20 |
immature eye | 1.49e-10 | 20 |
ocular region | 1.49e-10 | 20 |
eyeball of camera-type eye | 1.49e-10 | 20 |
optic cup | 1.49e-10 | 20 |
optic vesicle | 1.49e-10 | 20 |
eye primordium | 1.49e-10 | 20 |
sense organ | 3.81e-10 | 24 |
sensory system | 3.81e-10 | 24 |
entire sense organ system | 3.81e-10 | 24 |
nervous system | 2.04e-09 | 89 |
ectoderm-derived structure | 3.54e-09 | 171 |
ectoderm | 3.54e-09 | 171 |
presumptive ectoderm | 3.54e-09 | 171 |
ciliary epithelium | 2.78e-08 | 3 |
ciliary body | 2.78e-08 | 3 |
central nervous system | 4.81e-08 | 81 |
anterior segment of eyeball | 6.95e-08 | 14 |
pigment epithelium of eye | 1.17e-07 | 11 |
neurectoderm | 4.17e-07 | 86 |
vasculature of eye | 5.97e-07 | 6 |
uvea | 5.97e-07 | 6 |
vasculature of head | 5.97e-07 | 6 |
neural plate | 9.32e-07 | 82 |
presumptive neural plate | 9.32e-07 | 82 |